RNA id: AMCG00013892


Basic Information

Item Value
RNA id AMCG00013892
length 2721
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00013892
representative True

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 46150583 ~ 46155607 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCCCGCTCGCAGCCTCGTCCggggggtttgttttgttttcatccgGCAGCGTCGAGCGCACTCGGGGGTTAACGGATGGAGCGACCCGGCGCTACTTCTAGGTTCGCCGACAAACGGGTTTCCGTTGTTGGCAGAGGCCTTTGCAGGCAGTTCATCAGTGGGTGTTGCAGGTTTGGGCCAAGCTGTCACTTCTCTCACGAGTTGCCAGTATTGAAATCCCCTCAAATCTGCAAGTATTTCCAGAAAGGTGGCTGCTGGTTTGGAGAACGCTGCAGGTACCAGCATATCCTTCAGCCCGATGGGCGTGCTCCAGCGAGCAGACGTGGTTCGGCACCCGCCCTCCAACCCGCCTGGGGTGGCATGATGTTCCAGAATCGCCGTGGCTCGGAGCCTACCATCGCCCAGGCCCAGGGGGGCTACGCCAGGAGTCGCAGGGGGTCCGAGCCCCTGATGGCGAGCCTGGCCAGCCTGCAGCACGGCTTTGAGCGTCTGAGCATCGGGATCGCGGAGGAAGAGGAACAAGCTGCTGCCGAGGCGGTACCCCTGCGTCTGCAGCCCCAGGAGAGCGAGTGTCTGGGGTCGCACATGCGAAGAGGTCCCCTAGCATCACACACCGCAGCCCCTCTCTATGGCAGTGGGGCCGCATCCAGCTCTGCCCTGGCGCCTTGCCCTCCGGTTGTCCGAGTTGGTGTGGTAACGGTGGTACAAGAAAGCGGATCGGGTGCCGGGACACCGTGCTCACTGGAGTGCTCTAGCCAGCAGGGGGCATGTCCGAGCGGTGCAGAAGCCCCCCCCAGCAGAATACAGGCAGCGGGGTCCGCGGGAGAGGCCTACGAGCGCAGTAAAGACGTCACCTGCGGGATCTGCATGGACAAGGTGTTCGAGAAGCCCACCGCACAAGAGCGGCGCTTTGGCATCCTGCCCAACTGCAGCCATGCCTTCTGTCTGGGCTGCATTGTCACCTGGAGGAAGACCAAAGACTTCCAGGATGAGGTCATCAAGTCTTGTCCTCAGTGCAGAGTGATGTCTTCCTACTACATCCCTAACAAGTACTGGGTCAGCGATGGGGACCAAAAGGCAGCTCTTGTTGCCAGTTTCAAAGAGAAATGCAGCAAAATTAGGTGCAGTTTCTTCATGCGGCACGGGTGCTGTCCCTTCAAATCCGAGTGCATCTACCTACACGAGTTTCCCCGGGGATATCGACCTCGCCGGCGCCGCCGATCATCCAACCTGCCCTACCGCATGAGCCTGGATGACGCCCACAGCCACGGGctgcagctgcagctccagTACGTCATCGCCATGGCCCTGCTGGACGACCACGATGACGACGACATGCTGGAAGGATACTTTGAGCTCCTCATGGATGACTCTGACTCGTACTGAGCCTAGCAGGGATTCCCACCGTGTGCCCGCGGAGGGCCGAGGCAGCCCAGAGCCCAGCGCTAGTCCTACAGCCCATACATGCCATATGCCATCTGCTCTTGGTAGCTTAAGCAGGGAAGTCTGAAGGCTTTCCCAGCTTGATACTCTGCCCCTCTTTTAATATTCCACCCCCGGTCCTTTCTGTGGTCCCTGTTTTTTAAGCTACCTCATCCTACAGCAGGGACGCCATGGTCTCCCTTGACAAACACAACCTGGACTGATTTCTAACTTGCTTCCCAGTCTGTTCTGGTTTTTCCACCCCCGCCTTAACTGAGCAACTGACCTTTAACTTGGTCTTGTTTTATTCTCCAAATCCCGCATTTGGGTTTTTTAACAGTCCGCCTAACTTGTGTTTCTCTGAAATAGCCGTTGCACCGAATCTTTCAGTTGCCAAGGCGTACGGATCTCCGATTTTGAGCCAAAAGCGAGTCCTGGGCTGCCTCTGAAAATTAAACTCCTGAAGGGCAGGGGGTCCGTGTCCCATTTGTACGCTTGCAAAGTGGAGTAAAATGACGTGAATCCTGGCTGCTTGTGCACTGGGGGGGTGTGCTTGTGTAATCGTCACCTCTGATGGTTGGATGGCTTGTGTAGTTACACGGGTGAAGGAAGGTTGTTGGCAGAAGTTTCTAGTTGTCTATGATCTTGTTAATCCTCTTGTCACGTTGTTTATAtatcaaaaaaactaaatgaagaGCACCCATCTCTGTACTTTCTTGATACTCACTATAGTGGTCTGCAATTTTTAAGCTGAGCCCAGTGTTTGAGGTAAATcctgttaaatgtatattttccttcGGGTTGGACTCCTAGGTTTGATATGAGCAAGACCCCTCCCCGTTTAAATTCTAGAGCCTCCTTTTGGTTTGGGATGGAATACtaaagagatttgttttaatgtttaactcAAAATATTGTCTAGACTGTAAGGGGAAGCTGAACTTTAACAAGTGAAATCCGTTCAGCTTGCCCAGTTTGTCCCAATGCTGTGATTTTTAGGCTTCGGTCTCTTTCCCGTTCGAACTAGCCCTCCCTCATTCTGTATAAGAGCAGTGTTCTGAATCGGCAGGCGTTCTGAAGTACCCGTGTCATCCGTTAAATGCAGTGCTATAATGTGGTAGGCTTACTGTACTGACTGAGGGTGTCCtagacttttattatttttatatctgaTTGTATCCACGtaaagagaatgaaaataaaacctgtttcaCTACTTCTAATTTTGTCTGGTATTGTTCTGAAGCGACACCTGAAATGGCCATCTTCCATTTTTACATTGCATATAGACTAGTG

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU59104 lncRNA upstream 202727 45943571 ~ 45947856 (+) False AMCG00013879
TU59094 lncRNA upstream 228685 45921140 ~ 45921898 (+) True G47390
TU59091 lncRNA upstream 244184 45906102 ~ 45906399 (+) True G47387
TU59087 lncRNA upstream 247398 45901867 ~ 45903185 (+) True G47383
TU58999 lncRNA upstream 295814 45851095 ~ 45854769 (+) False G47322
TU59322 lncRNA downstream 141026 46296633 ~ 46302869 (+) True G47546
TU59362 lncRNA downstream 263525 46419132 ~ 46470471 (+) True G47580
TU59479 lncRNA downstream 774860 46930467 ~ 46934777 (+) True G47669
TU59491 lncRNA downstream 814131 46969738 ~ 46971538 (+) True G47681
TU59494 lncRNA downstream 819909 46975516 ~ 46976186 (+) True G47684
AMCG00013894 mRNA upstream 5979 46133626 ~ 46144604 (+) True AMCG00013894
AMCG00013895 mRNA upstream 26902 46103988 ~ 46123681 (+) True AMCG00013895
AMCG00013885 mRNA upstream 103461 46037393 ~ 46047122 (+) True AMCG00013885
AMCG00013884 mRNA upstream 145116 45993213 ~ 46005467 (+) True AMCG00013884
AMCG00013880 mRNA upstream 171939 45976228 ~ 45978644 (+) True AMCG00013880
AMCG00013896 mRNA downstream 817 46156424 ~ 46160416 (+) True AMCG00013896
AMCG00013897 mRNA downstream 5021 46160628 ~ 46163499 (+) True AMCG00013897
AMCG00013893 mRNA downstream 10044 46165651 ~ 46176881 (+) True AMCG00013893
AMCG00013899 mRNA downstream 23534 46179141 ~ 46197897 (+) True AMCG00013899
AMCG00013900 mRNA downstream 44107 46199714 ~ 46207783 (+) True AMCG00013900
TU59106 other upstream 208677 45934659 ~ 45941906 (+) True G47398
TU59011 other upstream 332628 45816372 ~ 45817955 (+) False AMCG00013872
TU58857 other upstream 789701 45326658 ~ 45360882 (+) True G47206
TU58815 other upstream 1054914 45034772 ~ 45095669 (+) True AMCG00013838
TU58527 other upstream 2709885 43438492 ~ 43440698 (+) True G46945
TU59522 other downstream 914094 47069701 ~ 47073708 (+) False AMCG00013919
TU59915 other downstream 2092460 48248067 ~ 48249713 (+) False AMCG00013961
TU59923 other downstream 2098687 48254294 ~ 48255821 (+) False AMCG00013961
TU59933 other downstream 2113147 48268754 ~ 48269272 (+) True G48018
TU59942 other downstream 2125456 48281063 ~ 48351285 (+) True G48026

Expression Profile