AMCG00014014 (ppil1,LOC107736561,LOC107667353)


Basic Information

Item Value
gene id AMCG00014014
gene name ppil1,LOC107736561,LOC107667353
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49680521 ~ 49682420 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014014
GTTTGAATCTGGAGACTCTGGCTCCTGATTGGCTGCGCGGAGTTCCGTGCCGCCCGGACTGATTAAGCAGGAACACCCGGCACGCTGGAGCGGAAACGAGCTCACGGCTGCGGCAGACAACAGCGCCGGCGCGAAGCAGACACATGTCTGCGGGTTTTACAGTCATTGTCACATTGCCGTGTTTAATACGGCGCTCAGAGCTCTGCCTGGCCGGCCCGGTACCTGTGCGCTGTGCTCGACTTGCGTCAGACGGGAAGAGGGTCATTGCCGTACCGCAGCGCAGGAAGTGCCGGGGTCCGCGCCTCTGCGCTGTTCATGCTGCTCCAGTGATCTCCGAGCAACATGGCCGGGATCCCGCCGGACTCATGGCAGCCCGCCACCGTCTCTCTGGACACGACGATGGGCACCATCGTGCTGGAGCTGTACTGGAAACACGCCCCCAAAACCTGCAAGAACTTCGCTGAGCTGTCCAGGAGGGGCTACTACAATGGCACCAAGTTCCACCGCATCATCAAGGACTTCATGGTCCAGGGGGGCGACCCGACTGGCACCGGACGGGGGGGAGCCTCTATATATGGCAGACAGTTTGAAGACGAGCTGCATCCAGAACTCAAGTTCACAGGTACCGGTACTGTTTCATTGTATTGCTACTGCAGTGGTGTTCCAGTCTGCGTGAGCCGTGTTCAGTGCTGCCGTGTCTGCAGTGCCTTTGTCACGCAGCGAGTTGTGCGTAGAGTGGATACTTCTCACAATACAGAGAGGATGGTTCCTGATACCAGAACACTGTTTTACCCGAGGTCTGTGGTATGATGACTCGCTCCCTATGCTATCATTAAGACACAGGCtgcatttaatcattatttatatttcatttcttTTGCTTGTCCTTTGTATTCTGTTCATTaatgcaatgtttatttttaatagatacCTGTactgaagatttgtttttattattttacatttgcactgGTGGCTGCTGTGCTCGTGACCGCAGCACAGTGTTGTCGGTACCTCTCGGGGACGCGGCAGGGGGTCAGCTGGTACGAACCTGTGTATCTGTGTCCTCAGGCGCTGGTATCCTGGCGATGGCCAACGCCGGCCCCGACACCAATGGCAGCCAGTTCTTCCTGACGCTGGGGCCCACGCAGTGGCTAGATGGCAAGCACACCATCTTCGGGCGCGTGAGCCAGGGCCTGTCCGTGGTCAACCGCATAGGCATGGTGGAGACCAACACCCAGGACCGGCCCGCCGACGACGTCAAGATCCTCCGGACCTCCCTGCCCTGCTGACCCGGACCCTCAACCTCTTGTCTTCATTTTATATCGTTTGTACAGTGAACACCCCGGCTGAACTCAGACCCACGACCTCTACCTGAATAAAGTCTTTTTACAGAATTTTTAA

Function

symbol description
ppil1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to be involved in protein peptidyl-prolyl isomerization. Predicted to act upstream of or within protein folding. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human PPIL1 (peptidylprolyl isomerase like 1).

NR:

description
PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1 isoform X1

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K12733 PPIL1; peptidyl-prolyl cis-trans isomerase-like 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014014 True 1404 mRNA 0.55 3 49680521 49682420

Neighbor

gene id symbol gene type direction distance location
AMCG00014018 celsr2,LOC106565652 coding upstream 6770 49653648 ~ 49673751 (+)
AMCG00014020 NA coding upstream 27359 49647798 ~ 49653162 (+)
AMCG00014025 celsr2 coding upstream 46654 49629809 ~ 49633867 (+)
AMCG00014017 LOC103467055 coding upstream 52756 49620633 ~ 49627765 (+)
AMCG00014016 NA coding upstream 67338 49610357 ~ 49613183 (+)
AMCG00014019 NA coding downstream 4388 49686808 ~ 49688657 (+)
AMCG00014027 NA coding downstream 12846 49695266 ~ 49697020 (+)
AMCG00014026 med20 coding downstream 21291 49703711 ~ 49706258 (+)
AMCG00014029 usp49,LOC106583088 coding downstream 35094 49717514 ~ 49728992 (+)
AMCG00014030 NA coding downstream 53994 49736414 ~ 49738159 (+)
G48449 NA non-coding upstream 645 49679497 ~ 49679876 (+)
G48372 NA non-coding upstream 195562 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 223823 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 226649 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 568438 49068105 ~ 49112083 (+)
G48460 NA non-coding downstream 47251 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 71164 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 110786 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 175060 49857480 ~ 49857687 (+)
G48560 tmcc2,LOC106565656 non-coding downstream 188686 49871106 ~ 49873377 (+)
AMCG00014021 NA other upstream 60494 49613701 ~ 49620027 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 135186 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 331920 49345097 ~ 49348601 (+)
G48231 NA other upstream 580063 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 584975 49014629 ~ 49095546 (+)
G48451 NA other downstream 7252 49689672 ~ 49692361 (+)
G48453 NA other downstream 16200 49698620 ~ 49699622 (+)
G48454 NA other downstream 18831 49701251 ~ 49701943 (+)
G48455 NA other downstream 20658 49703078 ~ 49703528 (+)
AMCG00014032 usp49 other downstream 24423 49706843 ~ 49717428 (+)

Expression


Co-expression Network