AMCG00014018 (celsr2,LOC106565652)


Basic Information

Item Value
gene id AMCG00014018
gene name celsr2,LOC106565652
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 49653648 ~ 49673751 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014018
atgcacactGTGGTGAACGAGCAGGTGCAGCTCACCTTCTCCGCAGgaGAAACGAAGACACTGGTGTCTCCCTTTGTCCCGGGGGGGGTGAGCGATGGCCAGTGGCATGTTGTCCAGCTGCAGTACTATAACAAGCCCGTCCTGGGAAACTCCGGTGTCCCCCAAGGCCCCTCTGACCAGAAGGTTGCAGTGGTGACGGTGGACGACTGTGACAGCTCGGTGGCGCTGCGCTTCGGTCACGTGATCAGGAACTACACGTGCTCCGCACAGGGCAGCCAATCAGGATCCAAGAAATCTCTGGACCTGACCGGGCCACTGCTGCTAGGGGGGGTGCCGGACCTGCCGGAGGATTTCCCGGTGCAGAACCGCGAGTTCGTGGGCTGCATGAAGAACCTGCAGATCGACAACCGGCCCTGGGGCAACCTGGCCGTGCCCCTCACCCTGCCCTGGTTCACCGGCCTCATGTTCCGCACACGGCAGCAACATGCCACGCTGCTGCGCGCCGCTGCCGGCACACACGCCTCCCTCAGCCTGCAGCTGAGTGAGGGCAGCGTGCTGCTGGTCGTGCAGCGGGGGGGTGAGGAGGTGGAGTCTCTCCAGATGGAGGAGCTCAAGGTGAACGACGGCGACTGGCATCACCTGCAGCTGGAGCTGAGGGCCGGGCGGGCAGCCACGTCCTGCCAGGCCATCCTGTCTTTCGACTACGGGCAGCACACTCGCGGCTGCAGTCTGCCCGACCCCTGCGACTCGGGGCCCTGCCCCCCCAGCAGCTACTGCAGCGACGACTGGGACAGCTACTCCTGCAGCTGCGACCCCGgctATTATGGCGACAGCTGTACAGACGTGTGCTCCCTGAACCCCTGTGAGCACCAATCAGCTTGCACCAGGAAGCCCAGCTCCTCCCATGGCTACACCTGCGACTGCGCCAGCAGCTACTTCGGCCAATACTGCGAGAACAAGATCGACCAGCCGTGCCCCAAGGGCTGGTGGGGGCACCCCATCGCCATCTGCTTCCCCTGCGACTGCTTCCCCACCGGCTCTGTGTCCCGGACCTGCGGCCCCGAGAGCGGCCAGTGCCAGTGCAAGCCCGGCGTCATCGGCCAGCGCTGCGACCGCTGCGACAACCCCTTCGCTGAGGTGTCGCACAGCGGCTGCGAAGtGATCTATGACAGCTGCCCCCGGGCGATGGAGGCTGAGATCTGGTGGCCCAGGACCAAGTTTGGCCTGCCGGCTGCCGTGCCCTGCCCCCGCGGCTCcgtggGCACGGCGATCCGTCACTGTGATGAGCACAAGGGCTGGCTTCCCCCCAACCTCTTCAACTGCACCTCGTCTGCCTTTGCCCCCCTCAAGAGCTTCGCGGACGAGCTGTGGCAGAACCTTTCCCTGCTGGACTCGGGCCGGGCACGGCGCCTCGCGAGCCAGCTGAGCAACGCCACGCTGCACACGCCCGCGCTGTACGGCAGCGACCGCGAGGGTGGGACGGCGCTGCTGCTGCTCGTCTCCATCGACCGGCTGGACAAGATGAACTTCGCGGGTGCCCGGCTGCCGCGGTACGAGTCTCTGCGCGGGGCTCAACCAGCTGACCTGGACACCTCGGTCACTCTGCCCGACTCCGTGTTCGCTCCCCCCGAGAGCAAAGGCAAGAGGGCCCAGCTGCCGGACTCCGCCCCTGAGGAAGTGAACCGCACCGCCCTACGGACTCGGCGCCACCCGGCCCAGGGTGGGCAGGAGGCAGTGGCCAGCGTCATCATCTACCACAGCCTGGCACCACTGCTGCCCCAGAACTACGACCCCGACAAGAGGAGCCTGAgGGTGCCGAAGCGGCCGATCATCAACACGCCGGTGGTCAGCATCACGGTGCATGACGGCGAGGAGATGCAGGGCGCACTGGACGGGCCAGTCACTGTGCAgatcgGGGGGGCGGGGGCGTGGTCAGCGAAGGGCTGTGAGGTGGTGTTCCGGAACCACACCCACATCAGCTGCCAGTGCAGTCACATGACCAGCTTCGCCGTGCTGATGGATGTGTCGCGCAGGGAGAACGGGGAGATCCTGCCACTCAAGCTGGTGACGGTGAGCGCGGTGGGGGTGACGCTGGGGGGGCTGTTCCtcacgctgctgctgctgctgctcctgcgcCCCCTGCACTCGAACCACTGCAGCATCGCCAGCAACGCCGCCGCCGCGCTCTTCCTCGCCGAGCTCGTCTTCATCCTGGGCATCAACCAGGCCGACAACCCGTTCGTCTGCACGGTCATTGCCATCCTGCTGCACTTCTTCTACATGTGCTCGTTCTCGTGGCACTTCCTCGAGGGGCTGCACTTGTACCGCATGACCACCGAGGTGCGCGACATCAACTACGGCCCCATGCGCTTCTACTACATGGTGGGCTGGGGCGTGCCGGCCTTCATCACAGGGCTGGCTGTGGGTTTGGACCCCGAGGGTTATGGGAACCCTGACTTCTGCTGGCTGTCTCTGTACGACACGCTGATCTGGAGCTTTGCCGGACCCATCGCTCTGGCCGTGTCGGGCCCCTGCGTGTTACTGCTGCGCGTGGTCTTCAACAAGGAGGTCCGCCGCGCCCTGCGCCACTGCTGCGGCCGCCAGCACAGCGACGACGCCATCACCAGCAAGTCCATGGCCTCGGTGAGTGCCGGCGCGCTGTCGTGTGCCCAGTGCTGTTGTGTGCCCAGCGCTGTTGTGTTGTCGTTGCTCTGTGCGTCTGACCGGCCACTGTCTCCCCCGCAGTCCTACAACTGCAACAACACCTACGTGGACGGCCGCCTGTACCGGCCCCCCTTCGGCGACTCCAGCGCCTCCCTGAATAGCACCACGCGCTCCGGCAAGAGCCATACCACCTACATCCCCTTCGTGCTCAGgGAGGATTCTGGACTCAACAACAGCCAGGCCCATATTGCGCTGAATGACCACAACTCTGCCCTCTTCCACGACAAGGACCCTGCTGACGAGCGTGACTCGGACTCGGACAGTGACCTGTCCCTGGAGGACGACCAGATGGACAATCTGCTGCAGCCCTACTGGCCGGGGGAGTTTGTGACGACGGCGAGCGAGAGTGAGGGCGTTGGGGGGCCGGAGCGGCTGACGGtggagtgtgggggggggcaggaggcCCTGCTGCAGGACCGGCCCCGCGAGAACGGACACGGTTTCCACAGGGATGGCACCCTGCCCGCCCTGCCGCACCCTGGCGCCCTGCCACAGAAAGGCATCCTGAAGAAGAAGCCGCTGCCCCCCATCGCAGAGAAGGGCAGCATCACCCGCATTCACAATGAGCTGTCTGGGGGGGGGCGTCCCGCCTCGTCACGCGGCTCCTCCTCCAGCGAAGGCGGCCGCCCCCCCCGGCCCCGCCCCACCCCGCTGGACCCGCCCAACGGCCTGCTGCCCCAGAGCCTGCCCCCCCACAGCCTGCCACCCAATGGCCTGCCCCCCCACAGCCTGCCGCCCATCGCCATGAGCATCCGCACCGGCCCCGTGGATGAGGACTCGTCCGGCTCCGAAACACCCTGCCACACTGTCTGGGCTGAGGCCCACGCCACCCAACACAAGGGCACGGTGTGGcaccagcccagcccagcccaaaCTAGCCCAGACCAGACCAGACCAGTCCTGACCATCATCTGGCCCGAGACAGCCATCTCTACCTGCCCTGGGCTGCCTCTCCCCCTGGCTGGGACCCGGACCCGGGGCGTGGCTGTGGTGCCTGGGCTGGGCACAGCGCACAGAGACTGGCAGTGTAGTGGCGGCCCGGCCCCGCGAGGACGCCCGGGCCTGGAGGACGACCTCATCACCGGCGCGCTGTTTCACTGTCCTCTCATGCCAGCGCCGGCTCTGGACCGGGCCCCTGCACTCCGGCACTGGACACTAAGCTTCCCAGGGGCCTCGTTG

Function

symbol description
celsr2 Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Acts upstream of or within several processes, including cell-cell adhesion; epiboly involved in gastrulation with mouth forming second; and facial nucleus development. Located in plasma membrane. Is expressed in brain; eye; and ovary. Orthologous to human CELSR2 (cadherin EGF LAG seven-pass G-type receptor 2).

NR:

description
PREDICTED: cadherin EGF LAG seven-pass G-type receptor 2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014018 True 3903 mRNA 0.67 29 49653648 49673751

Neighbor

gene id symbol gene type direction distance location
AMCG00014020 NA coding upstream 486 49647798 ~ 49653162 (+)
AMCG00014025 celsr2 coding upstream 19781 49629809 ~ 49633867 (+)
AMCG00014017 LOC103467055 coding upstream 25883 49620633 ~ 49627765 (+)
AMCG00014016 NA coding upstream 40465 49610357 ~ 49613183 (+)
AMCG00014013 NA coding upstream 58782 49588177 ~ 49594866 (+)
AMCG00014014 ppil1,LOC107736561,LOC107667353 coding downstream 6770 49680521 ~ 49682420 (+)
AMCG00014019 NA coding downstream 13057 49686808 ~ 49688657 (+)
AMCG00014027 NA coding downstream 21515 49695266 ~ 49697020 (+)
AMCG00014026 med20 coding downstream 29960 49703711 ~ 49706258 (+)
AMCG00014029 usp49,LOC106583088 coding downstream 43763 49717514 ~ 49728992 (+)
G48372 NA non-coding upstream 168689 49484489 ~ 49484959 (+)
G48354 NA non-coding upstream 196950 49453984 ~ 49456698 (+)
G48353 NA non-coding upstream 199776 49453033 ~ 49453872 (+)
G48243 NA non-coding upstream 541565 49068105 ~ 49112083 (+)
G48236 NA non-coding upstream 603350 49027168 ~ 49050298 (+)
G48449 NA non-coding downstream 5746 49679497 ~ 49679876 (+)
G48460 NA non-coding downstream 55920 49729671 ~ 49731800 (+)
G48467 NA non-coding downstream 79833 49753584 ~ 49754027 (+)
G48479 NA non-coding downstream 119455 49793206 ~ 49793650 (+)
G48552 NA non-coding downstream 183729 49857480 ~ 49857687 (+)
AMCG00014021 NA other upstream 33621 49613701 ~ 49620027 (+)
AMCG00014010 srsf3,LOC103385776,LOC105933254,LOC105017130 other upstream 108313 49538054 ~ 49545335 (+)
AMCG00013996 NA other upstream 305047 49345097 ~ 49348601 (+)
G48231 NA other upstream 553190 49076742 ~ 49100458 (+)
G48235 LOC105889183 other upstream 558102 49014629 ~ 49095546 (+)
G48451 NA other downstream 15921 49689672 ~ 49692361 (+)
G48453 NA other downstream 24869 49698620 ~ 49699622 (+)
G48454 NA other downstream 27500 49701251 ~ 49701943 (+)
G48455 NA other downstream 29327 49703078 ~ 49703528 (+)
AMCG00014032 usp49 other downstream 33092 49706843 ~ 49717428 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G378414 NA unknown CI01000186 null 488357 ~ 488483 (-)