AMCG00015384


Basic Information

Item Value
gene id AMCG00015384
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8782660 ~ 8784858 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015384
GTTCTGGCCAGGCCCGCCTCGCGCTTCCTTTCTGAGCAGCGACCCCGTTTAAAATAATGCGAAACTGAAAGGAAAcgggcaggaggaggaggaggaggtgggcgGCTCAACATAAAAAGCAATTTCGAGAGGAATTTCGAGAGCTGCTGGTTGCGGCAGACATTGACAAACGCAGCCGCGAGTATGTGCTCTGGTCCTTGCGGGCGCTGAGTGTGCGCGTCTGAGCCCGCAGGTTTTGGATGAGAGtgcccctctgtgtgtgtgtgtacgtcgAGCACTGTCCCTGTAGATGCCGCGCACCATCACGCAGCGCGGACTGGAGACGCCTAAGGCTGGCTGCTGTAGGGACGTGACCATCCTCGTTATCACCATTGCCTGAAACGGTGCCACACCACGACGGACATCCCGCGGGGGCACAGTCAGACGGCGTGTGCGTGTCGCTGCATATTCGCTCCAAGGGCGTCGTTCCGACAGACGGGACTCCCTGCGCAGCGATGCTGGTGCTGATGGAGCCGCAGAGCACGGAGAGCCTAACCGTGTCCGAGGACAGCTCGCAAGGGACGTCAGACTGGGGCTGCCATCCGGAAAAGAGCCTCAAGCGCCGGGAGAAGAACCGCGTGGCGGCGCAGAGGAGCCGCAAGAAACAGACGGAGCGCGCCGACGTCCTGCACGAGGTGAGGGGGGTGATCGAGGAACTGGAGTCTCTGGAGAAGCAGAACGCCAGCTACCTGAAGGAGATCGCCTCCCTGCGCGCTGAGCTGCAGCTCTACACTGAGGCCCTGCTTACCCACGAGCCCTTATGCGCGCTCAGAGAGTGGCCCCCCCAGCCCAGCCTTGCTCCACCCACACTCCCCCTCGACCTACGAGgcccgccccccaccccccagaccCACATGGCTGCACACGAGGACGATTCAGATTTTCTGAGTCTATTATTGCAGCTTGCGGGAGAGAAGTGAGAGAGACTAAAGATGCcca

Function

GO:

id name namespace
GO:0006821 chloride transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015384 True 978 mRNA 0.61 3 8782660 8784858

Neighbor

gene id symbol gene type direction distance location
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding downstream 5246 8759865 ~ 8777414 (-)
AMCG00015386 NA coding downstream 48213 8733335 ~ 8734447 (-)
AMCG00015385 LOC108428058,LOC107568312,LOC107715375,LOC107669368 coding downstream 95013 8685767 ~ 8687647 (-)
AMCG00015387 LOC108267603,LOC106603153,LOC107583282,LOC107721660 coding downstream 111317 8668204 ~ 8671343 (-)
AMCG00015379 ppp1r14b,LOC108268202 coding downstream 158944 8613256 ~ 8623716 (-)
AMCG00015403 NA coding upstream 107997 8892855 ~ 8896268 (-)
AMCG00015401 NA coding upstream 144287 8929145 ~ 8933379 (-)
AMCG00015404 cnih2,LOC106922620 coding upstream 154054 8938912 ~ 8939915 (-)
AMCG00015405 NA coding upstream 184601 8969459 ~ 8974509 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding upstream 192241 8977099 ~ 8982886 (-)
G97801 NA non-coding downstream 27 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 63101 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 114609 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 125839 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 148000 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 283085 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 309297 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 329158 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 598650 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 896307 9681165 ~ 9681682 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 199974 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 236865 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 370778 8409987 ~ 8411882 (-)
AMCG00015361 NA other downstream 412629 8361614 ~ 8370031 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 499031 8223199 ~ 8283629 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other upstream 4802 8789660 ~ 8794774 (-)
AMCG00015394 NA other upstream 44444 8829302 ~ 8838979 (-)
AMCG00015400 NA other upstream 169655 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 253738 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 367360 9152218 ~ 9156447 (-)

Expression


Co-expression Network