AMCG00015388 (ppp2r5b,LOC107588189,LOC107749805)


Basic Information

Item Value
gene id AMCG00015388
gene name ppp2r5b,LOC107588189,LOC107749805
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8759865 ~ 8777414 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015388
ATGGAGACGACTAAACTGCCCGCTTCCAGCCCCTCTTCCCCCACCACCAGCTTCTCCGTCCCCAGCGCCGAGAAAGTCGATGGCTTCCCCCGCCGGTCGATGCGCCGAGCCCGGCAGAGGCGATCGCACAGCTCGTCCCAGTTCCGATACCAGAGTTCCCAGGTGGAACTCACGCCACTGCCCCTTCTTAAAGATGCCCCGGTGGCAGAGCTCCACGACCTGTTCTGTAAGAAGCTGCAGCAGTGCTGCGTGCTGTTCGATTTTCTGGACTGCGTGGCTGACCTGAAGGGCAAGGAGATCAAGCGTGGTGCGCTGAACGAGCTGGTGGAGTGTCTGCTGGAGCTGTTTGACAGTGAGGACCCCCGTGAGAGGGAGTACCTGAAGACCATCCTGCACCGGCTGGCGTACTGTGTGGTGCAGTTCATGGAGAAAGACGCCACCGTCACGGAATACATCATCAGGGGGCTTCTGAAGTACTGGCCAAAGACCTGCACCCAGAAAGAGGTGATGTTCCTGGGCGAGGTTGAAGAGATTTTGGATGTGATCGAGCCATCGCAGTTCATCAAGcagcagcggcggcAGCAGAGCCTGGGTGAGCAGTCCATGAACCAGCTCAACCTGCAGCACAGCCAGAACCACAGCGATCCGTCCCACAGCTGCAACACCTAG

Function

symbol description
ppp2r5b Predicted to enable protein phosphatase regulator activity. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Orthologous to human PPP2R5B (protein phosphatase 2 regulatory subunit B'beta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit beta isoform-like

GO:

id name namespace
GO:0050790 regulation of catalytic activity biological_process
GO:0007165 signal transduction biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015388 True 669 mRNA 0.59 7 8759865 8777414

Neighbor

gene id symbol gene type direction distance location
AMCG00015386 NA coding downstream 25418 8733335 ~ 8734447 (-)
AMCG00015385 LOC108428058,LOC107568312,LOC107715375,LOC107669368 coding downstream 72218 8685767 ~ 8687647 (-)
AMCG00015387 LOC108267603,LOC106603153,LOC107583282,LOC107721660 coding downstream 88522 8668204 ~ 8671343 (-)
AMCG00015379 ppp1r14b,LOC108268202 coding downstream 136149 8613256 ~ 8623716 (-)
AMCG00015380 NA coding downstream 151557 8601327 ~ 8608308 (-)
AMCG00015384 NA coding upstream 5246 8782660 ~ 8784858 (-)
AMCG00015403 NA coding upstream 115441 8892855 ~ 8896268 (-)
AMCG00015401 NA coding upstream 151731 8929145 ~ 8933379 (-)
AMCG00015404 cnih2,LOC106922620 coding upstream 161498 8938912 ~ 8939915 (-)
AMCG00015405 NA coding upstream 192045 8969459 ~ 8974509 (-)
G97589 NA non-coding downstream 40306 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 91814 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 103044 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 125205 8612495 ~ 8634660 (-)
G97561 NA non-coding downstream 148469 8610947 ~ 8611396 (-)
G97801 NA non-coding upstream 3323 8780737 ~ 8782633 (-)
G97805 NA non-coding upstream 290529 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 316741 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 336602 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 606094 9383508 ~ 9384124 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 177179 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 214070 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 347983 8409987 ~ 8411882 (-)
AMCG00015361 NA other downstream 389834 8361614 ~ 8370031 (-)
AMCG00015348 ehd1b,LOC107718765,LOC107720605,LOC106603140,LOC107548869,LOC106930329,LOC103471421,LOC103136898 other downstream 476236 8223199 ~ 8283629 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other upstream 12246 8789660 ~ 8794774 (-)
AMCG00015394 NA other upstream 51888 8829302 ~ 8838979 (-)
AMCG00015400 NA other upstream 177099 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 261182 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 374804 9152218 ~ 9156447 (-)

Expression


Co-expression Network