AMCG00015400


Basic Information

Item Value
gene id AMCG00015400
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8954513 ~ 8960144 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015400
ATGGCGGAGAGCACAGCACTGGACACCCTGCTGGAAATGGGCTTCGACCGGAACCGCGCTGAGAAGGCTCTGGTTAACACTGGGAATCAGGGCATCGACCGGGCCATGGATTGgctAATGGAACATGAGAATGACCCTGATATTGATGAACCCTATGTGCCCCCCAAGGGCAATGTGCTGGGGGCAGGGGGCACCGAGTCAACGCCCCCCCCGGACTCCAGCGCAGAGGGCAATGCCGAGGGGTCACCGGAGGGGCAGGACAAGCGACCTTTGACTGAGGAGGAGAAATTGGAGCAGGTCAGGAGGCTGGAGCAGCTGATGCGGGAGAAGCAGCGCGAACGGGAGGAGCGCGAGCGCGAGGCCGAGGTGCAGCGTGAGAAGGAGCGGCGGCGGCAGGgccaggagctgctgcaggtgCGCCAGAGGCTGCAGGACGAGCAGATGAGGAAGCTGGCAGAGGAGCGGCTGCGCGAGAAGATGGAGGACAAGATGGCCAAgcagCGAGTGCGGGACAAGATCGccagagacagagcagagagagcGCTGAAGtttggAGGGGGCGCTGATTCCTCCTCCCCCCCCGTGGAAGCAGTGCCATCCTCGTCCGTGCCCCCCGTAGCCCAGGGAGCTCCCCCCGCCAAGAAAGACTACGATGAGTCAGTCAGGGTCTACGTGCAACTGAATGGAGGGGGGCCTGACGAGTTCTCCCTGCTCACCCCCTACCCCCGGCGCCTGTTCACTGAGGAGGACATGGAGAAACCCCTCACAGAGCTGGGTCTGGTGCCGTCAGCAGTCCTTGTCGTGGCCAAGAAGtgagagaaggaaagagggaaggagctggagctggagagagggagagatggagaggtgAAGGGAGGGGGGAAGAGACAGATGGACTGCAATTCCTGCTCCCagttcacccccccccccaaccaagAGGAGAGTAGGAGGcctgcagggagggagagagagagattctcaCCCCATAATTGAATTAGTGTAATTGAGTTTTTGGTTGTCTTAAAACATAAATCCCTAATTTGTTCAACAGCTGAAAGACTAGATGGGGAGGAGGGCAagagatctgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagtgtgagagtgagtgtgtgtctcaggaGTTAATTGCAAATCTTAATGAGAAAACCGAACCCGGATGACCGTGGGTGTTAATTATGGACTGGATTGTGCAAGTCAGCCCCCACCCTCCCCTGTGAGTACACACCCGCTCATATCTGTCTCAATCTTTCTCGGTTTGTTTCACCGCTACAATACAGACTGCTGCCAAGGAACCAAAATccttaagacttttttttttttttt
>TU121974
NNNGGCAGCAGTCAGGGTCTACGTGCAACTGAATGGAGGGGGGCCTGACGAGTTCTCCCTGCTCACCCCCTACCCCCGGCGCCTGTTCACTGAGGAGGACATGGAGAAACCCCTCACAGAGCTGGGTCTGGTGCCGTCAGCAGTCCTTGTCGTGGCCAAGAAGtgagagaaggaaagagggaaggagctggagctggagagagggagagatggagaggtgAAGGGAGGGGGGAAGAGACAGATGGACTGCAATTCCTGCTCCCagttcacccccccccccaaccaagAGGAGAGTAGGAGGcctgcagggagggagagagagagattctcaCCCCATAATTGAATTAGTGTAATTGAGTTTTTGGTTGTCTTAAAACATAAATCCCTAATTTGTTCAACAGCTGAAAGACTAGATGGGGAGGAGGGCAagagatctgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagtgtgagagtgagtgtgtgtctcaggaGTTAATTGCAAATCTTAATGAGAAAACCGAACCCGGATGACCGTGGGTGTTAATTATGGACTGGATTGTGCAAGTCAGCCCCCACCCTCCCCTGTGAGTACACACCCGCTCATATCTGTCTCAATCTTTCTCGGTTTGTTTCACCGCTACAATACAGACTGCTGCCAAGGAACCAAAATccttaagactttttttttttttttg
>TU121992
CACAGAGGGGCGCTGGGCAGGTAGTTTGTCCCCAGCCTGCCACCGTAGTTGAGTCTTCCATGCGAAACGGAAGTAGCCGAGCGACTCTGTGAGTAAGCAAGTAGCTTTCATACCACAACAATacgttaaataaatattgtccaCAAAAAACAGATCACCGCTTCATCCATCCCGGGACCGATACTGTTAATTTCGGCGCAGGAGCATCGCGGAGTGTGGAGCGAGAGAAGCTGCAGTGAGATGGCGGAGAGCACAGCACTGGACACCCTGCTGGAAATGGGCTTCGACCGGAACCGCGCTGAGAAGGCTCTGGTTAACACTGGGAATCAGGGCATCGACCGGGCCATGGATTGgctAATGGAACATGAGAATGACCCTGATATTGATGAACCCTATGTGCCCCCCAAGGGCAATGTGCTGGGGGCAGGGGGCACCGAGTCAACGCCCCCCCCGGACTCCAGCGCAGAGGGCAATGCCGAGGGGTCACCGGAGGGGCAGGACAAGCGACCTTTGACTGAGGAGGAGAAATTGGAGCAGGTCAGGAGGCTGGAGCAGCTGATGCGGGAGAAGCAGCGCGAACGGGAGGAGCGCGAGCGCGAGGCCGAGGTGCAGCGTGAGAAGGAGCGGCGGCGGCAGGgccaggagctgctgcaggtgCGCCAGAGGCTGCAGGACGAGCAGATGAGGAAGCTGGCAGAGGAGCGGCTGCGCGAGAAGATGGAGGACAAGATGGCCAAgcagCGAGTGCGGGACAAGATCGccagagacagagcagagagagcGCTGAAGtttggAGGGGGCGCTGATTCCTCCTCCCCCCCCGTGGAAGCAGTGCCATCCTCGTCCGTGCCCCCCGTAGCCCAGGGAGCTCCCCCCGCCAAGAAAGACTACGATGAGTGTCGGATACAGGTGCGTTTGCTGGACGGCTCCGCGCTGTGCGCTGTCT

Function

GO: NA

KEGG:

id description
K24348 UBXN1_4; UBX domain-containing protein 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015400 True 1358 mRNA 0.57 9 8954514 8959583
TU121974 False 709 lncRNA 0.51 2 8954513 8955417
TU121992 False 946 TUCP 0.61 9 8956415 8960144

Neighbor

gene id symbol gene type direction distance location
AMCG00015404 cnih2,LOC106922620 coding downstream 14598 8938912 ~ 8939915 (-)
AMCG00015401 NA coding downstream 21134 8929145 ~ 8933379 (-)
AMCG00015403 NA coding downstream 58245 8892855 ~ 8896268 (-)
AMCG00015384 NA coding downstream 169655 8782660 ~ 8784858 (-)
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding downstream 177099 8759865 ~ 8777414 (-)
AMCG00015405 NA coding upstream 9315 8969459 ~ 8974509 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding upstream 16955 8977099 ~ 8982886 (-)
AMCG00015410 vps51 coding upstream 23435 8983579 ~ 8990241 (-)
AMCG00015411 frmd8,LOC106563469 coding upstream 64500 9024644 ~ 9029070 (-)
AMCG00015408 NA coding upstream 89857 9050001 ~ 9054092 (-)
G97801 NA non-coding downstream 171880 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 234954 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 286462 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 297692 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 319853 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 107799 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 134011 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 153872 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 423364 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 721021 9681165 ~ 9681682 (-)
AMCG00015394 NA other downstream 115534 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 159739 8789660 ~ 8794774 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 371827 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 408718 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 542631 8409987 ~ 8411882 (-)
AMCG00015409 NA other upstream 78452 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 192074 9152218 ~ 9156447 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 214699 9174843 ~ 9184406 (-)
G97897 NA other upstream 393073 9353217 ~ 9355732 (-)
AMCG00015460 NA other upstream 848674 9808818 ~ 9815466 (-)

Expression


Co-expression Network