AMCG00015401


Basic Information

Item Value
gene id AMCG00015401
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8929145 ~ 8933379 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015401
GGAACATTTCTAATACTAGGAACCATATCCCGCCTCGGCGTTTCCAGCCGGAGGAGTCTGCCGGTGCACCGCGCTGGACAGTGTGCTGCTCGGAGAACTGCGGTGATCTTTCCACCCGGGATTCGGCGGACCGGACCTTCGAGCGCCATGGCGGAGAAGAGCCAGCTGTGCTCGGTGTGGGTCGGTTCCGAGACGGGGATCCTGAAAGGTGTGCTGCTGGGCTGTGTGAGCGGGGAGGTCCGGACGTTCAGTACAGAGAAGGGTCGCTACATCGAACACCGGCAGTGCTCAGAGCCGGGGCTGGGCCGCTTCATCGGGTTGGCTGTGTATGACAGGTACTGCCCTCTCGCTCAGGTGGAGGTGGCAGTGGGCCAGGGTGTGTGCCGGATGCGTCAGGACCCAATGCAGCGTCACCGTGTGGCCACTGGAGGGAAGGAGAACCCACTGAAGGTCTGGGACCTGCAGAAACCAGAGGCACCGATCTTCACTGCCAAGAACGTGCGTAATGACTGGCTGGACCTGCGGGTGCCGGTGTGGGTTAAAGACCTGCAGTTCATCCCGGGCTCTGACAAGATCGTCACCTGCACTGGACACCACcagGTGCGTGTGTACGATCCCTCCTGCCCCACGCGGCGCCCCGTCCTGGAGACCACTTACGAGGAGTACCCACTCACCGCCCTCAGCCTGACCCCTGACCACAGctCGGTTGTCGTTGGAAACACACACGGACAGCTGGCTATCATCGACCTACGAAAGGGGCTGGTGCGGGGGTGTCTGAAGGGACTGGCGGGGTCGGTGCGGGGGCTGCAGTGtcacccctccctccccctggTGGCGTCCTGTGGGCTGGACCGCTTCCTGCGTGTGCACAGCCTGACCGACCGCACGCTGCAGCACAAGgtgtaCCTAAAATCACGACTCAACTGCCTGCTGCTGTCCAGCCGAGACAACCTAGAGGAGGGGCCAGCTGGGTTGGTGGGCGAGGAAGGCgtgaaggaggaagaggaagggcaGGGGGATGAGGTGTGGGACACCATGGAAACTGTGACAGACAGAGCGAGCAAAAGGGCGGCGGAGGAGAGTGAGGGCCGAAcagggaagaagaaaagaaaagcagcaaaatgagagatggagaggagacaagccctctctctctgggtccTTGTCCCCTGACAGAGAGATGAACTCTTCACCTTCTCTTCACCAAAACATCTTGTCACCATTTTGTCTCTGTTACTATAACTGTAACATTTTTggtagttttttattttatgatgaaTACTTTTCCAATAACTAAGTGTGGATGATATGATATGCctagactggagccagcgctgtggggactctactataggggcccagactggagccagtgctgtggggactgtactataggggcccagactggagccaacGCTGTAGggacagtccagtccagccagTGACTCTGTATTTttcccagtccagtccagtccagtccagagaGCTGATCCCATGGTGACGGGTCACTCCCAGTGAACAGATGCCCAGTGTCTCTGAAGTGGATCGACAGtggaacagttttttttttttttttttttaatcc

Function

GO: NA

KEGG:

id description
K14841 NSA1, WDR74; ribosome biogenesis protein NSA1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015401 True 1585 mRNA 0.58 9 8929145 8933379

Neighbor

gene id symbol gene type direction distance location
AMCG00015403 NA coding downstream 32877 8892855 ~ 8896268 (-)
AMCG00015384 NA coding downstream 144287 8782660 ~ 8784858 (-)
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding downstream 151731 8759865 ~ 8777414 (-)
AMCG00015386 NA coding downstream 194698 8733335 ~ 8734447 (-)
AMCG00015385 LOC108428058,LOC107568312,LOC107715375,LOC107669368 coding downstream 241498 8685767 ~ 8687647 (-)
AMCG00015404 cnih2,LOC106922620 coding upstream 5533 8938912 ~ 8939915 (-)
AMCG00015405 NA coding upstream 36080 8969459 ~ 8974509 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding upstream 43720 8977099 ~ 8982886 (-)
AMCG00015410 vps51 coding upstream 50200 8983579 ~ 8990241 (-)
AMCG00015411 frmd8,LOC106563469 coding upstream 91265 9024644 ~ 9029070 (-)
G97801 NA non-coding downstream 146512 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 209586 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 261094 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 272324 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 294485 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 134564 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 160776 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 180637 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 450129 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 747786 9681165 ~ 9681682 (-)
AMCG00015394 NA other downstream 90166 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 134371 8789660 ~ 8794774 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 346459 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 383350 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 517263 8409987 ~ 8411882 (-)
AMCG00015400 NA other upstream 21134 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 105217 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 218839 9152218 ~ 9156447 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 241464 9174843 ~ 9184406 (-)
G97897 NA other upstream 419838 9353217 ~ 9355732 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110533992 NA misc NC_048574.1 CM023228.2 44248264 ~ 44258913 (-)