AMCG00015404 (cnih2,LOC106922620)


Basic Information

Item Value
gene id AMCG00015404
gene name cnih2,LOC106922620
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8938912 ~ 8939915 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015404
ATGTTCATGTGTGCGGAGGAGTGGGTAACGCTGGGCCTCAACATCCCCCTGCTCTTCTACCACCTCTGGAGgtATTTCCACCGGCCAGCGGATGGGTCAGAGGTCATGTATGATCCGGTGAGCGTCATGAACGCCGACATCCTTAACTACTGCCAAAAAGAGTCCTGGTGCAAGTTGGGCTTCTACCTGCTCTCCTTCTTCTATTACCTGTACAGtatGGTCTACACTCTGGTCAGTTTCTAA

Function

symbol description
cnih2 Predicted to be involved in regulation of AMPA receptor activity. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite and synapse. Is expressed in basal plate midbrain region; brain; diencephalon; tegmentum; and telencephalon. Orthologous to human CNIH2 (cornichon family AMPA receptor auxiliary protein 2).

NR:

description
PREDICTED: protein cornichon homolog 2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015404 True 243 mRNA 0.52 3 8938912 8939915

Neighbor

gene id symbol gene type direction distance location
AMCG00015401 NA coding downstream 5533 8929145 ~ 8933379 (-)
AMCG00015403 NA coding downstream 42644 8892855 ~ 8896268 (-)
AMCG00015384 NA coding downstream 154054 8782660 ~ 8784858 (-)
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding downstream 161498 8759865 ~ 8777414 (-)
AMCG00015386 NA coding downstream 204465 8733335 ~ 8734447 (-)
AMCG00015405 NA coding upstream 29544 8969459 ~ 8974509 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding upstream 37184 8977099 ~ 8982886 (-)
AMCG00015410 vps51 coding upstream 43664 8983579 ~ 8990241 (-)
AMCG00015411 frmd8,LOC106563469 coding upstream 84729 9024644 ~ 9029070 (-)
AMCG00015408 NA coding upstream 110086 9050001 ~ 9054092 (-)
G97801 NA non-coding downstream 156279 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 219353 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 270861 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 282091 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 304252 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 128028 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 154240 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 174101 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 443593 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 741250 9681165 ~ 9681682 (-)
AMCG00015394 NA other downstream 99933 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 144138 8789660 ~ 8794774 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 356226 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 393117 8541188 ~ 8545795 (-)
G97455 mark2a,LOC107715377 other downstream 527030 8409987 ~ 8411882 (-)
AMCG00015400 NA other upstream 14598 8954513 ~ 8960144 (-)
AMCG00015409 NA other upstream 98681 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 212303 9152218 ~ 9156447 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 234928 9174843 ~ 9184406 (-)
G97897 NA other upstream 413302 9353217 ~ 9355732 (-)

Expression


Co-expression Network