AMCG00015405


Basic Information

Item Value
gene id AMCG00015405
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 8969459 ~ 8974509 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015405
CGAATAACTTTGCAAAGGTCCAGATATTTGGTTGCCATGGTGAACCTGGTGCGCCGCTATACAGGCGCTGGCGCTCTGCCGGAAAGGAGACGCAGCGTGCGTGGGCTCGTCATCGTCCCTCACAAAGATGGCGGCGGAGAGTTCGAATTTGGACACCAATGGCGAATTCACCGCCGGACCGGAAGATGCTCAGAAGGAGGGGCTGGCGAGTCCAGAGGTTGAGGTCACCCCACCTGCCGACCCACCCACagccccctgccctcccccaccGGAAGTGAAAGGTCAGGAGGATGGGGGGGACAAAGGTGACAAATCAGGACAGACGAGCGTCAGCGTGTTGCCGGGGTCGGAGGCCGTGGAGCTGTACCCCGCCGCCCTGGAGGATtatggggagggggaggaatCGGAGGGTGAGCTGCCCGCGGAGTTTGAGCGGGCATTCTGGGCCTTCTTCGCCCGCTACCCGCTGTGCTATGGCTACTGGAAGAAATTTGCAGACATGGAAAAACGGGCTGGCTCCCCCCGCAGAGCTCAGGAGgtgtGTCTGCAAGGCCTGCAGGCCATCCCCCTCAGCCTGGATCTGTGGATCCACTACATCTCTCTGCTACAGGAGACTCTCAACATGAACCTGCCTGAGTCCACACAACGCATCcgcagTGCGTTCGAGTCAGCCGTGAGTGCAGCGGGGCTGGAGTTCCGCTCGGACCGGCTGTGGGAGATGTTCGTGGATTGGGAGAGGGAGCAGGGCGAGCTGCGGGCTGTCACTGCCGTGTTTGACAGGGTGCTGAGCATGCCCACGCAGCTGTACAGCCAGCACTACCAGAGGTTTAAGGAGCATGTGGAGAGCCACTCCCCCCGAGATATCCTGTCCACTGAGGACTTCCTGAAActgaggtcagaggtcatgcGAGGTCGGGCGGCGGCCACCCCAGTGATGGGGCGGGAGGAGGTGCCACCTGGGGAGGACGGCCCTCCAGGTATCAGCTCAGCCAATCAGGAGACGgaggaggaggagcagaaggTTCGGGAGCTGTTATTGGCCAGCCGTCAGGAAGTACACCAGCAGACTGAGGTGGAGGTTAGCAAGCGCTGGGCGTTCGAGGAAGCGATCAAGAGGCCATATTTCCATGTGAAGCCCCTGGACCGGGGACAGCTCCGTGCCTGGCAGAACTACCTGACCTGGGAGACGGCCAATGGGGACCATTGCAGGGTGACTGTGCTGCACGAGCGCTGTGTCATCGCCTGCGCCCTGTATGAGGAGGCCTGGATCCGGTACACGCGGTACCTGGAGCAGCACAGCGTGGACGGCAGCCGAGAGGTGTTCCGCCGGGCCTGCGAGATCCACCTGCCCAAGAAGCCCAACATCCACCTGCAGTGGGCCAGCTTCGAGGAGCGGCAGGgGAACGTGGAGGGAGCACGCCGGCTGCTGGAGCGCCTGGAGCTGGCCGTGCCGGGGCTGGCCGTGGTGCGCCTGCGCAGAGCCGGGCTGGAGCGGCGCAGCGGCTTCACAGACAGGGCGGAGTCTCTGCTCCGGGAGGCGGTGCAGCAGAGCCAGGCCACGCCCCTCCATGCCTTCTACTCGATCAAGCTGGCCCGACTGCTGCTCCGGGTGCAGAGGAACCCGGGCAAGGCCAGGAGAGTGCTGCAGGACGCCATCGAGAGCAACCCGgaGAACAGCAAGCTGCACCTGAACCTGCTGGAACTGGAGTGTAGTGCAGACCTGCGCCAGAACGAGTCCAATGTGCTGCGCTGCCTGGCCCGTGCGCTGGCCGCCCCGCTGCCCGCCTCTGCACGCCTTCTTTTTTCGCAGCGCCGCCTCGAGTTCCAGGAGGACTTCGGGCACACTGTGCAGAGCTTGCTGAATGCGTACGACGATCACCAGGCCCTGCTGCAGGAGAGCAACGGCAAGAAGAGGGGTGCCGAGAacgggtga

Function

GO: NA

KEGG:

id description
K13217 PRPF39, PRP39; pre-mRNA-processing factor 39

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015405 True 1933 mRNA 0.64 12 8969459 8974509

Neighbor

gene id symbol gene type direction distance location
AMCG00015404 cnih2,LOC106922620 coding downstream 29544 8938912 ~ 8939915 (-)
AMCG00015401 NA coding downstream 36080 8929145 ~ 8933379 (-)
AMCG00015403 NA coding downstream 73191 8892855 ~ 8896268 (-)
AMCG00015384 NA coding downstream 184601 8782660 ~ 8784858 (-)
AMCG00015388 ppp2r5b,LOC107588189,LOC107749805 coding downstream 192045 8759865 ~ 8777414 (-)
AMCG00015402 tm7sf2,LOC107548864,LOC107720613,LOC107693941,LOC107701161,LOC107555157 coding upstream 2590 8977099 ~ 8982886 (-)
AMCG00015410 vps51 coding upstream 9070 8983579 ~ 8990241 (-)
AMCG00015411 frmd8,LOC106563469 coding upstream 50135 9024644 ~ 9029070 (-)
AMCG00015408 NA coding upstream 75492 9050001 ~ 9054092 (-)
AMCG00015420 NA coding upstream 211765 9186274 ~ 9201237 (-)
G97801 NA non-coding downstream 186826 8780737 ~ 8782633 (-)
G97589 NA non-coding downstream 249900 8719246 ~ 8719559 (-)
G97575 NA non-coding downstream 301408 8664075 ~ 8668051 (-)
G97574 NA non-coding downstream 312638 8655173 ~ 8656821 (-)
G97562 NA non-coding downstream 334799 8612495 ~ 8634660 (-)
G97805 NA non-coding upstream 93434 9067943 ~ 9072138 (-)
G97860 NA non-coding upstream 119646 9094155 ~ 9110050 (-)
G97861 NA non-coding upstream 139507 9114016 ~ 9529153 (-)
G97906 NA non-coding upstream 408999 9383508 ~ 9384124 (-)
G98006 NA non-coding upstream 706656 9681165 ~ 9681682 (-)
AMCG00015400 NA other downstream 9315 8954513 ~ 8960144 (-)
AMCG00015394 NA other downstream 130480 8829302 ~ 8838979 (-)
AMCG00015393 zgc:77262,LOC107715378,LOC107669316,LOC107568302,LOC108428054,LOC107567914,LOC108278748,LOC107700012 other downstream 174685 8789660 ~ 8794774 (-)
AMCG00015372 lrfn4,LOC101077706,LOC106517947,LOC102210474,LOC101487083,LOC102311587 other downstream 386773 8579500 ~ 8582686 (-)
AMCG00015374 NA other downstream 423664 8541188 ~ 8545795 (-)
AMCG00015409 NA other upstream 64087 9038596 ~ 9040141 (-)
AMCG00015415 NA other upstream 177709 9152218 ~ 9156447 (-)
AMCG00015419 klc2,LOC107747958,LOC107728029,LOC106578016 other upstream 200334 9174843 ~ 9184406 (-)
G97897 NA other upstream 378708 9353217 ~ 9355732 (-)
AMCG00015460 NA other upstream 834309 9808818 ~ 9815466 (-)

Expression


Co-expression Network