AMCG00015705


Basic Information

Item Value
gene id AMCG00015705
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17186838 ~ 17235784 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015705
GTGGCCAGTTTGACCTTGAGATGAATTTCATCATTCAAGAGGTGGACAGTATCTCTTGCATGGTGGAGCTTCTGGATAAATGTGATCAGACCTGCCAGGCTGAAGTATGGAGCATCTTTACTGCCATTCTAAAGAAGAGCATTCGCAACCTGCAGGCCTGCACTGAAATAGGTCTCATAGAGCAGGTGCTGATGAGGATTGATAAAACTGACAGTATGATAGCAGacttGCTTGTTGACATGCTGGGAGTATTGGCCAGCTACAGTGTAACAGTCAAGGAGCTGAAGCTCTTCTTTAGCAAGCTTCAAGGAGAGAAAGGACAATGGCCTCCACATGCTGTGAAACTACTGTCAGTTCTAAAGTATATGCCTCAGAAAAATGGTCTGGATTCCTTCTTCAGCTTTCCAGGAAAAAGTGCAGCAGCTATCGCTCTGCCTCCCATTGCAAAGTGGCCCTACCAGAATGGCTTTACCTTCCACACCTGGCTGCGGATGGATCCAATCAACAACATCAATGTTGATAAGGATAAACCTTACTTttttcgCACAAATAAAGGGTTGGGATACTCTGCACATTTTGTTGGAGGTTGCTTGATCATAACCTcattaaaatcaaaagcaaagggATTCCAGCACTGTGTGAAGTACGATTTCAAACCACAGAAGtggTACATGGTGACAATAGTGCATATCTACAATCGCTGGAAAAACAGTGAGATCAGTTGCTATGTCAATGGGGAACTTGCATCATATGGAGAAATCACTTGGCTGGTCAATACTAGTGATACATTTGATAAGTGTTTCCTGGGGTCCTCTGAGACTGCAGATGCTAACCGGGTGTTCTGTGGTCAGATGGGGGCAGTGTACCTCTTCAGTGAAGCTCTCAGTGCAGCCCAGATACTTGCAATCTATCAGCTGGGTCCTGGATACAAGGGGACATTTAAGTACAAGGCAGAGAGTGACCTTCTCTTTGCTGAACACCACAAGATGTTGCTGTATGATGGGAAGCTGTCCAGCTCCATTGCATTCATGTACAACCCCAGAGCTACAGATGCGCAGCTCTGCCTGGAGTCTTCCCCCAAGGACAACCCTTCCATTTTTGTTCACTCACCTCATGCCCTTATGCTGCAGGATGTCAAGGCAGTGGTCACACATTCTGTTCAGAGTGCTATCCATTCAATTGGAGGAGTGCAGGTTCTCTTTCCTTTGTTTGCACAACTCGACTATCTCCAGCATGCTACTGATGAAGTGGACACCACTGTATGCTGCACTCTGCTGTCCTTTGTGATGGAGCTGCTGAAGAACTCGGTGGCTATGCAAGAGCAAGTCCTTTCCTGCAAGGGCTTTCTAGTGATTGGGTATAGTCTGGAGAAGTCCTCCAAAACCCATGTCACCCGACCAGTGCTGGATTTATTCCTGGCCTTTGCCAGGTACCTGAGTAACTTGCAGAATGGTGTGCTTTTGCTCAAGCAGCTCTGTGATCACATACTATTCAACCCTGCAATCTGGATTTATGCTCCGGCCAAGGTGCAGCTAACACTGTATACTTACCTGTCCACCGAGTTCATCAGTACTGTTACCATCTACAATGCAATCCGGAGAGTTGGGACTGTTCTGCAGATCATGCACACCCTGAAGTACTACTACTGGGTTGTGAATCCACAGGACCGCAGCGGAGTGACACCCAAGGCATTAGATGGGCCAAGACCTAACCAGAAGGAGATCCTTTCTTTGCGAGcatttctgttgctgtttgtcAAACAGTTAATAATGAAGgATTATGGGGTGAAGGAAGATGAACTCCAGAGTATTCTCAACTACCTTCTTACAATGCACGAGGATGACAATTTAATGGATGTGCTGCAGCTGCTTGTCGCATTGATGTCGGAGCATCCCGGCTCCATGGTCCCTGCCTTTGATCAGCGCAATGGAGTACGAGTTGTTTATAAGCTCCTTGCATCTAAGAGTGAAGGGATCCGAGTACAGGCATTGAAAGTCATGGGTTACTTTCTGAAACATTTGCCTCCAAAGAGAAAGGCAGAAGTCATGCTGGGACATGGCCTATTTTCCCTGCTCTCTGAGCGCCTGATGCTCCAAACAAACTTATTCTCCATGACTACATATAATGTCCTCTTTGAGATCCTCACAGAGCAGATCTGTACACAAGTAATTCACAAACAACACCCGGATCCTGACTCAACTGTGAAGATACAGAACCCACAAATCCTGAAAGTGATAGCTTCTCTTCTGAAGCATTCCCCTCAGTGTGCAGATAGCATGGAGGTGCGCCGAGTCTTCCTGTCAGACATGATCAAACTTTTCAACAACAGCCGAGATAACAGGAGGAGCTTGCTTCAGTGCTCAGTGTGGCAGGAATGGATGCTCTCGCTATGCTACATCAATCCAAAGACCTCTGAGGAGCAGAAGATTACAGAAATGGTCTACGCCATCTTTAGGATTCTCCTCTACCATGCCATCAAGTATGAGTGGGGAGGTTGGCGTGTCTGGGTGGATACACTTTCTATAACTCATTCcaaggtTACATTTGAACAACACAAAGAGAACCTGGCACGGATGTTCAGGGAGTACCAAAGATTGGGGGAGGAAAGTGGAGGACAGGACATCATTAGAACTGTTTCTAAAGCCAGCAGTGATGCAGAAGGCCTGACCACGGTCAATGGCGAAGAGCTGAAAAGCACTCTGAATTCACCTGAAGTCACCGGACTCCAGGATGTTGAAGAAGTAACTCCTACTGCGACTGATCTCAGCATTGTAAACACAGAGGAGGGTGCTATTACTGCTGATGCAAGTACACCTGAAGAAAAAGTGAAAGACAATACTGAGGATCAGGTTATAGTGACTGATCTATTTACCAAATCACATCTTAAAGAGTATCCCCATACAGCCAGTCAGGTACCTGTTGATGTTCCTGTAGCAGAAAGTTCAGAGATCTCCACAGTAAAATTCAAAAGCTCAGCAGAAGCCACATCTGAAGACATGCCAGCAGATGAAGCTAAAGCTGAAGATAGTAATGAAACTACTGCTGAAGACAATTCAAGGGCAGAATCTGCACCTGAGGCAAAAGAAGAGGTAGCTCAAAACAAGGATGATCCTTTGATTGAACCTGCTGCTAGCAATGAATCTTCTGCTGAAGAGGGAAATGAAGCTACAACAAAAGACATTCATATTGATGAAGCCAGCACAGCAGAAACTTTGGAATTCCAGGCTTCCACTGAGACTTCTGTGGATCTGGAAGTTTCTAAAGATGCAGAAGCAGGCACCTCGCAGCACAATGAAAAAGCTACTGATGTTTCACCTGTAAAAGATCAAGTCATGGCTGTAGATGAAAGCCCAGCAACTACAACAACAGCAGAGCAGGAGAATGAAGACGAGAAACAGGAGCTCAAGGTACATAAAGATGGTGAGGAGTCTCAATCCAAAGAGGAACCAATATCTGAAACAACCGAGCCTGCAGTGCCGGAGGGCCAGGATAGCTCACCGCTAGAAGTGGATAAGGCTGCTGAAAAGCTGGGGACATCCAGCACTGAAGTGGTGACGGCAAGCAGCAATGCTGATAAAGACCCAGCCGAGAGTGCTAGCAAGACTACAGTCAAGACCAAAGAGATTAAGATTGCGAGGTTGGATGTGTCTAGCGTGGCTTCAGACACAGAAAGACTGGAATTGAAAGAGCAACCGTCTTTGGATTTCAGTCAAGGACAGTCCGCCGCCTCTGGTTCTGCGGGCCCAGGGCGAGAGGGTTCCTCGGGAAGATCCACCATGTTCCGCATCCCTGAATTCCAGTGGTCTCATATGCACCAGCGCCTGCTCACCGATCTGCTCTTCTCAATTGAGACTGATGTGCAGATGTGGAGGAGCCATTCCACAAAGACAGTGATGGACTTCGTAAACAGCAGTGAGAACGTCATCTTTGTGCACAACACTGTCCACCTGGTCTCCCAAGTTGTCGACAACATCATCATGGCCTGCGGTGGCATCCTGCCCCTGCTTTCTGCGGCCACCTCCTCCACTCATGAACTGGAGAATATCGAGCCGTCGCAGGGTCTCTCCATCGAGGCTTCAGTAACCTTCCTCCAGAGACTGATTAGCCTTGTAGATGTGCTGATTTTCGCCAGCTCTCTCAGCTTCACCGAGATTGAGGCGGAAAAGAACATGTCTTCAGGGGGGATTCTGAGACAGTGTCTTAGACTGGTGTGTGCGATGGCTGTCCGCAACTGCTTGGAATGTCAGCAGCACTCCCTCTTTCAACCTGGCTTGGAGAACACCAGGGGACAGAAAGCTATGCAAGGACTATTGGGAACTGGGAAATTTGCCCCTGCACAGGCAATTGATGTTGTAACTGGAGGGATTTCTTCAATAAGGGACCTTGATCGGCTGCTTCAGGACATGGACATAAACCGACTTCGAGCTGTGGTTTTCAGAGACATTGAGGACAGCAAGCAAGCACAGTTTCTTGCTCTGGCAGTAGTGTACTTTATTTCAGTCCTGATGGTGTCCAAGTACAGGGACATTTTGGAAccacagaatgaaagaaagcaATCTCAGCACAATAAGTCAGTCAAGAATGGAAGTGATGCAGCAACATCTACAGAACTCAACAAGGATGGTTGTGTGGACAGTGCCCAGGCTGTGAGTGACCTTGAAAATGGTGCCTCTTCTCGAAGGAGAGACTCTGGCATTGGAGAGGAACAGGCATCCATTGCTGCCTCTGAGGTGGAGTCTGGGGCCTCAGCCAGGGCAGAGGGTGGTGTTTCGGGGCCAGATGCTATCAGTGAGGTGCTTTCAACACTCTCCTCCGAAGTAAAGAGGAACCAGGAGACGACCGATCAGGACAGCAAGATATCAGCCACACAGGggaaaaatgtgaatgtgaaggACATCCTGCGCAGCCTGGTCACGCCAACAGATGATATCATAGTGGACCCCAGCCTTATCCCTCCAGCGTTCTTGGGAGCAGTAGGAGATGGTGTCAAGGACCAGTCTGTGCAGTTCCAGTCCTTTGACAGG

Function

GO: NA

KEGG:

id description
K24181 LRBA; lipopolysaccharide-responsive and beige-like anchor protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015705 True 5024 mRNA 0.48 28 17186838 17235784

Neighbor

gene id symbol gene type direction distance location
AMCG00015706 NA coding upstream 33360 17153275 ~ 17153478 (+)
AMCG00015701 gatb,LOC106602370,LOC106602377 coding upstream 193557 16972365 ~ 16993281 (+)
AMCG00015700 fbxw7 coding upstream 316479 16835026 ~ 16870359 (+)
AMCG00015698 NA coding upstream 398329 16728102 ~ 16788509 (+)
AMCG00015699 NA coding upstream 476036 16679746 ~ 16710802 (+)
AMCG00015708 NA coding downstream 45895 17281679 ~ 17300446 (+)
AMCG00015707 lrba,LOC106602365 coding downstream 82509 17318293 ~ 17330594 (+)
AMCG00015710 lrba coding downstream 115498 17351282 ~ 17385325 (+)
AMCG00015709 lrba,LOC107598261 coding downstream 180591 17416375 ~ 17447661 (+)
AMCG00015716 nr3c2,LOC107550687,LOC107742541,LOC107670737 coding downstream 654708 17890492 ~ 17919482 (+)
G99842 NA non-coding upstream 115784 17070583 ~ 17071054 (+)
G99840 NA non-coding upstream 119248 17067161 ~ 17067590 (+)
G99839 NA non-coding upstream 154109 17032429 ~ 17032729 (+)
G99836 NA non-coding upstream 173797 17012662 ~ 17013041 (+)
G99833 NA non-coding upstream 180361 17005412 ~ 17006477 (+)
G99867 NA non-coding downstream 214300 17450084 ~ 17465514 (+)
G99915 NA non-coding downstream 364919 17600703 ~ 17600908 (+)
G99933 NA non-coding downstream 601833 17837617 ~ 17837900 (+)
G99934 NA non-coding downstream 697215 17932999 ~ 17933328 (+)
G99932 NA non-coding downstream 718701 17954485 ~ 17956630 (+)
AMCG00015703 rps3a,LOC106592945 other upstream 55063 17098459 ~ 17131775 (+)
AMCG00015687 NA other upstream 688307 16494692 ~ 16498531 (+)
AMCG00015682 NA other upstream 728996 16433443 ~ 16457842 (+)
G99624 NA other upstream 1055451 16131044 ~ 16131387 (+)
G99541 NA other upstream 1385204 15796950 ~ 15801634 (+)
G100007 NA other downstream 1084272 18320056 ~ 18325904 (+)
AMCG00015725 smad1 other downstream 1509103 18744887 ~ 18771966 (+)
G100338 herc3 other downstream 3031623 20267407 ~ 20268285 (+)
AMCG00015796 hspa12b,LOC107583310,LOC107697252,LOC107721672 other downstream 5443053 22678837 ~ 22683895 (+)
G101061 NA other downstream 7629305 24865089 ~ 24865552 (+)

Expression


Co-expression Network