AMCG00015743 (znf330,zn330,LOC107746098)


Basic Information

Item Value
gene id AMCG00015743
gene name znf330,zn330,LOC107746098
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 19747264 ~ 19760155 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015743
ATGCCCAAGAAGAAGACCGGCGCTCGCAAGAAGGCGGAAAGCCGTAAGGAGCGAGAGAAGCAAAATCGTGCCAACAGGGACCAAGTTGACTTGGCAAAACACCCCTGCAATTCATCTATGGGGGCGATCTGTGACTTCTGTGAAGCATGGGTTTGCCATGGAAAAAAGTGTCTGGGCACCCACGCCTGCATCTGCCCTCTCGCTGATGCGGACTGCATTGAGTGTGAAAGAGGGGTCTGGGAGCACgGAGGAAGGATATTCCGCTGCTCCTTCTGTCATAACTTCTTGTGCGAAGACGACCAGTTTGAACATCAGGCCAGCTGCCAGGTTCTGGAGGCAGAAACATTTAAGTGTGTTTCCTGCAACCGATTAGGTCAACATTCTTGTCTTCGCTGCAAGGCTTGTTATTGTGATGATCACGCTCGCAGCAAAGTGTTTAAACAAGAAAAGGGCAAGGCGCCACCCTGTCCCAAGTGTGGGCATGAAACTCAGGAAACCAAAGACCTCAGCATGTCCACTCGCTCTTTGAAGTTTGGCCGCCAGAGCGGGGCAGACAGTGATGGTGCTTCTGGATACGATGCCTATTGGAAGAACCTGGCATCCGGAGGAGGGGGAGCCGGAGAAGACAACGACTATGAGGATTACGGAGAGGAAGATTATGAGGACGATGACGACgaagacgaggaggaggaggaagatgaggaCAAGGAGTCTGACGCCGAGGTGTCCGAACCCTTCTCCGAGCTGAACCTCGGGCGGACCTACGCCAGTGGGTACGCCCACTATGAGGAAACTCAAAACTAG

Function

symbol description
znf330 Predicted to enable zinc ion binding activity. Predicted to be located in nucleolus. Predicted to be active in nucleus. Orthologous to human ZNF330 (zinc finger protein 330).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 330

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015743 True 804 mRNA 0.53 6 19747264 19760155

Neighbor

gene id symbol gene type direction distance location
AMCG00015740 NA coding downstream 488142 19239310 ~ 19259122 (-)
AMCG00015739 NA coding downstream 592952 19132809 ~ 19154312 (-)
AMCG00015738 smarca5,LOC107703846 coding downstream 621782 19110816 ~ 19125482 (-)
AMCG00015735 LOC106602344 coding downstream 827657 18876488 ~ 18919607 (-)
AMCG00015733 NA coding downstream 884456 18860261 ~ 18862808 (-)
AMCG00015749 NA coding upstream 147484 19907639 ~ 19910150 (-)
AMCG00015750 NA coding upstream 167227 19927382 ~ 19928527 (-)
AMCG00015753 LOC108275807,LOC108441536 coding upstream 172130 19932285 ~ 19945300 (-)
AMCG00015751 NA coding upstream 236014 19996169 ~ 20010622 (-)
AMCG00015755 NA coding upstream 355138 20115293 ~ 20122414 (-)
G100257 LOC104962440 non-coding downstream 7063 19721668 ~ 19740201 (-)
G100233 NA non-coding downstream 34048 19712927 ~ 19713216 (-)
G100222 NA non-coding downstream 45805 19671742 ~ 19701459 (-)
G100218 NA non-coding downstream 47435 19625060 ~ 19699829 (-)
G100185 NA non-coding downstream 614698 19132360 ~ 19132566 (-)
G100261 rnf150,LOC107703843,LOC107746087 non-coding upstream 41821 19801976 ~ 19802225 (-)
G100267 NA non-coding upstream 79219 19839374 ~ 19844744 (-)
G100297 NA non-coding upstream 165647 19925802 ~ 19926102 (-)
G100381 NA non-coding upstream 233085 19993240 ~ 19995630 (-)
G100385 NA non-coding upstream 335726 20095881 ~ 20100083 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 1116599 18627605 ~ 18630665 (-)
G99939 NA other downstream 1909322 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 3135820 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 3211796 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 3274087 16467299 ~ 16473177 (-)
AMCG00015752 NA other upstream 214801 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 467212 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 2920539 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 3983635 23743790 ~ 23746703 (-)
G101067 NA other upstream 5232798 24992953 ~ 25000890 (-)

Expression


Co-expression Network