AMCG00015763


Basic Information

Item Value
gene id AMCG00015763
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 20313130 ~ 20340896 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015763
TTCTAATTGTAAGGATCGTTGCACGCACAGTACCACAGTGATGTTGTGCTGGGGATCAGCTTCGCTCCAGGACTTGGGATTGACCAGCGCCGCTGTTCCCGGCCAGCGAGTGGCTGCCATTGGATGTGGGGACGGAGTTACTGCATTTGTTAAAGGAAACGGCAATGTCACAGTTTCACTGCAAGGAGGAACACAGAGGCTGTccaacaaaagaaaatcaaGGCCGGTGGTGCTGCAGAAGAGAGAGCAGATTGTGTCGCTGGCGTGCGGAGCGGATCACATTGTGCTGCTGTCAGACTCCGGCAGAGGCTTTGAGGGGAATTGCAGAGAACAGAGCAAAGTGGTGAACGCCAGacCATTAACAGGTTTATATGAAAGATGCATTATCCAGGTGGCATGTGGAAATCATCATTCGTTGGCACTTTGTGAAgATGGACAGCTTTTTGCATGGGGACAGAACGCCAATGGGCAGCTGGGCCTGGGGAAAGGAGAGCCCAACAAGTCCTCCCCCCAGTTCCTCAAGTCTCTGTCTGAGATCCCCCTGGCTCAGATCTCCGCTGGGGGGGATCACAGCttcgctctgtctctctcgggGGCCGTGTTCGGCTGGGGGAAAAACAACGCTGGGCAGCTGGGTCTAGGAGACACCGAAGACAGATCTGCTCCAACCCCTGTGAATTCATTAGCACTAAAGAAGACCGTTTCCATTTCGTGTGGAGGAGAACATACTGTAGTCTTGACAAAGGATGGCTTAGTCTATACATTTGGGTTGGGTAGCTCTGGGCAGCTTGGACACAACTCAGACAGGAATGAACTGCGACCTCGACTGGTGGCTGAACTGTGGGGCGTGAGAGTGACCCAGATCGCCTGTGGGAGgAACCATACGATGGCTTACGTTTCCTCTTTACAAAGGATCTTCACTTTTGGATGTGGAGCACAAGGCCAGTTAGGAAGTGGCTTGACAGAACAGCAACCGATTCCACTGCCagtgacagcagcagcagACAACGGGACTCAACTCTTTGTGGACAGAATATTCGCAGGAGGGAGCTTGTCATTTGTATTAAGCTCCCCAAACAAgGGTTCAGAAAACATACCTGTCAAGAAGATTTCTACAGTAGACAGCGAGGTGGTGGAGAAATTGATTTCGGCATCTTcttcaaggaaaataaataaatcTAAAATTGATCACATTTTTGGCTCGTCCTCATGCCTTAATGGAAGCTTCCTTCAACAGAGGAATGATGAGCATTACAAGACAGCCCCCAGCAGACCAGGAATTAACATGAAACAAGTCCATCACATTTTCAAGAAGCTGAAGGAGAATGAAAAATTGTTGGCACAGGTTCAGGCTGTGGTCTTTGGAAAGCTGCTGCCCTCTCTTAGCAAAACTCCTGCTGGAGTGGAAGCCCTTAGAGTGTATCTGATTGTCCCAGTACTCGTCAAAATTCTCAAACCACAAAAGGACCTCAGTGTCTtcactgatgcactgactgaTGCAGTTCTCAGACTAAACCCACACAGTCTCAGCTTGCTTGAATCCTTCTGGACATCCCTGCCAAGTACATCCCTCAAATTCTTAGTGAAGTGCTATAAAAGTCAATCCTGGGAATACCTGCTGAAAGTTCATGAAGGAAAAGACAAGCTTCAAAAACTCCTACGAATCTTAACATTATTATACAAGGTCAATGGAAAGGTTAAAACTCCCATCGCAGAGAAAGAGTTCTGTATCAAGaacatttctctgtttttgccTCCATATGAACGTCTACGTAAATGGGAGGTCCTTCTTACGGAGGAgAATGCAATGTGTGTATCACAGCTGGTGGATCTCTTCTGCCATTCACCATTTCTCCTGGACTTGGATGTCAAGGTGCAGCtgtttaatacaatttcatttttaaaaaagCAAACATTCAGGGatttgtgggggggggtgttatgCCTCCACTTCAATATGAGGCGTGATCACATTATTGAAGATGCTTTCCATTGCCTTTCCTCTGTTCTGGACACAGACTTCAAGAAGGAATTTCAGGTGACTTTTTTTGGTGAGACCGACCGTCCAGGAGTGCTGAAAAAGGATTTCTTCCTTCACTTGTTTGACAAACTGATAGAGCCTGATTTTGGCATGTTCTGGTGCAATGAAACATCAACGTTGCTGTGGTTTCCAACCAAGGCATCAGTGGAGCAGGGGAGGTACAATTTCCTTGGAGTTCTATGTGGATTAGCAATGAACAACTACACCACAGTACACCTCCCGTTCCCTCTGGCGCTGTTTAAGAAGCTGGTAGGGGTGAAGCCCACCCTGAAGGACCTTAAGGAAATGGAGCCAGTGATTGGGAAGAGTCTGCAAGAAATTCTCGACTACAGTGAAGATGACATAGAAGACATCATGTGCTCGACGTTCACTGTGGCTGCAGGGGGGAACCACAGCTTCGTCCTCTCGCACTCGGGGGCCGTGTTCGGCTGGGGCTGCAACAGAGCAGGGCAACTGGGACTTGGCGACACCCAAGTGTTGGCAGAGGCAGAGGCTCTGAGGGTCTTCCTGATTGTGTCTGAGCTCATAGGGGTTCTTCATTCTCTTCAGCACAGCGCTACTGAATTAACAGTGGCGTTGGCAGCTGCTATTTCTTCACTGCAACCAAGTAGTCTTCAGCTGCTTGAGTCCTTGTGGTTGGTGACTCCAGCGGAGTTCTTTGAGAGAGCGGTCGTGGGGTTCCGTGATGTGTGCAACCACATCGTTTTGAAGATAGATGAGGATCCAATccaaaactggaaaaaactaaataatattttctcaGTTTTACAGAAGCTCAGCAATGTAAGCTTACAGTTTTATAGTTTctga

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015763 True 2851 mRNA 0.48 22 20313130 20340896

Neighbor

gene id symbol gene type direction distance location
AMCG00015755 NA coding downstream 190716 20115293 ~ 20122414 (-)
AMCG00015751 NA coding downstream 302508 19996169 ~ 20010622 (-)
AMCG00015753 LOC108275807,LOC108441536 coding downstream 367830 19932285 ~ 19945300 (-)
AMCG00015750 NA coding downstream 384603 19927382 ~ 19928527 (-)
AMCG00015749 NA coding downstream 402980 19907639 ~ 19910150 (-)
AMCG00015762 NA coding upstream 847 20341743 ~ 20363462 (-)
AMCG00015760 NA coding upstream 106204 20447100 ~ 20469761 (-)
AMCG00015764 NA coding upstream 142674 20483570 ~ 20484280 (-)
AMCG00015772 NA coding upstream 145808 20486704 ~ 20586968 (-)
AMCG00015769 emx1,LOC106611434,LOC108246069,LOC103150078 coding upstream 346975 20687871 ~ 20697635 (-)
G100416 NA non-coding downstream 4027 20307051 ~ 20309103 (-)
G100391 LOC100846954 non-coding downstream 159496 20153186 ~ 20153634 (-)
G100385 NA non-coding downstream 213047 20095881 ~ 20100083 (-)
G100381 NA non-coding downstream 317500 19993240 ~ 19995630 (-)
G100297 NA non-coding downstream 387028 19925802 ~ 19926102 (-)
G100468 NA non-coding upstream 435724 20776620 ~ 20776836 (-)
G100535 NA non-coding upstream 963138 21304034 ~ 21310751 (-)
G100554 NA non-coding upstream 1077779 21418675 ~ 21502989 (-)
G100555 NA non-coding upstream 1106255 21447151 ~ 21509487 (-)
G100556 NA non-coding upstream 1110173 21451069 ~ 21457293 (-)
AMCG00015761 herc3 other downstream 33486 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 331573 19974956 ~ 19981557 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 1682465 18627605 ~ 18630665 (-)
G99939 NA other downstream 2475188 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 3701686 16592228 ~ 16611444 (-)
AMCG00015800 NA other upstream 2339798 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 3402894 23743790 ~ 23746703 (-)
G101067 NA other upstream 4652057 24992953 ~ 25000890 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 7645859 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 7700667 28041563 ~ 28069876 (-)

Expression


Co-expression Network