AMCG00015989


Basic Information

Item Value
gene id AMCG00015989
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 32586700 ~ 32598705 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00015989
CGCACGGCACGCGTTCTGGCTGCGCGGCTCAGGCTGCGCGTCGGCTGCCGATGCTGTGGCTTTAAGGAGAGTCTGTCATGGGCGCCGGGGCCTAGCGAGCGGACACCCAGCGAGCAGggggatcttttgaaaatgttgcctGAAGATAGTTGGAAGGTGCAGCATGAGAAGATGCACGTGAAGCACCGGGGCCATGAGGCGATGCACGCGGAGATGGTGCTGATCCTCATTGCCACGCTGGTGGTGGCCCAGATCGTGCTGGTGCAGTGGAAGCAGAGGCACAGCCGGTCCTACAACCTGGTCACCCTGCTGCAGATGTGGGTGGTGCCCCTGTACTTCACGCTCAAGCTGTACTGGTGGCGTTTCCTCTCCACCTGGGGCATGTTCTCCGTCATCACCAGCTACGTCATCTTCAGAGCCACACGCAAGCCCCTCGAGAGGAGGACACCACGGATGGTGTACAAGTGGTTCCTGCTCATTTACAAGCTGAGCTACGCTGTGGGAGTCGTGGGCTACATCGCCATCATGATGACGATGTTTGGCTTCAACTTGTTCTTCAGGATTAAGACGGAAGACTCGATGGATTTTGGGGTGATCTTGCTGTTTTATGGCCTGTACTACGGAGTCATGGGCAGGGACTTCGCCGAGATCTGTTCTGATTACATGGCTTCTACGATAGGGTATTACAGCGTGGGCGGCATGCCCTCCCGCAGCCTCTCCGAGGACATCTGCGCCGTTTGCGGACAGAAGATCTTCGTAGACCTGGATGAGGAGGGCATCATCGAGAACACCTACCAGCTGTCCTGCGGTCATGTGTATCCTGCCCGAGCGAAGAGCGGCATCTCCGCATGGCTTCCCAGATTTCATGAGTTCTGCATCCGGGGCTGGTGCATCGTGGGTAAGAAGCAGACCTGCCCGTACTGCAACGAGAAGGTGGACCTGCGCAAGATGCTCAACAACCCGTATCCTTCCATGCGGTGCACACTGGAGCCCCGGCGCCGGCATCCCTACGATGATGACGCACTGGCCTCAGTGTTTCTGTCCACAGTGTGCTGTATTGGAGGTCAGGCTGTCGCTGCTGTGACGGGTTTTGCTGCCCGGGAGTCCACTGGAGCGCCTGGCAGCGCTGTCCTGCATGACTGGGAGCGCACTCACGTGCTGTACGGGCAGCTGCTGGACTGGCTGCGCTACCTGGTGGCCTGGCAACCGCTGATCATCGGGGTGGTCCACGCCATCAACTACACCCTGGGGCTGGAGTAGGACCCCGGCGGGGGCGCAGGGCACCCTGGGGCTGGAGCAGCTGGGGCACAGAGGCCTTCATCGCCCACCTGtacatgtctgtatatattgcACTTAAGATTGTACAGTCAGGACTCTTTTCTACGCTGTAAGTTATGAATGTAAATACGGATGCAATGACCCTGTCCTGCGTCTCCCAGCTGGCACTCTTGCCCTCCTGCTGTCCGCTCTACTCTGAGCCTCTGAgtaataaatctgttttatatgtatttcagtttgtttagtGAGTCAGTTCTGTCACAGTTGGGCTTCTTccgattttccttttttttgtttttcttttttgcaagttgcttttttttttaatgtatttttaacttgtCAATTGCATAACTGCTGTGCAGCTGTGGAGACGGGTCTGTAGTGAGTTATTGCACAGAGTTAGAATTTGCTTAAGAAGCGTTTTTTAAAAAGAGGAAGGGTTTAGGTCTCACTTCCTCAGGCAGGCCTGTGTGACGGTCTCTTGCCCCACGCGGCCCAGAGCGGTTGTGCAGACCCGGCACACGCTGCACAAAGGCCTTCACATACGCCTGCGCAGACCGTGGGTCAGAGTCTGTCTTCAGCAACACATCTTCATTCTCACAAGACACCCATACAATCGCACCCTGCAGTGACCAACACgtcagtgctgctgtgtgtgtgtgtgaagagggCTTCACCTGTCTGGAGAGGTTCAATAAAAGGTGTTTTAGTACCTGTGTGcttactgtgtgtgtgatgggcacggggggaggagaggagcaCAGAAGCCAAGGCACTGAACCTGTTTTATTGCGTTAGTCACAGCGaaatggaaaggaaaggaaaagtgtTTTTACATCTTAACCTCAGTACAAGGTACCCTACTGGGATGGGTATAAGTGTGagaatgtttacaaaaataaaatataactgaaAATATGCACAGCTGCAATAAACCAGCTATATTCACTCCCAGTTTACAACCTATCTGTGCTGTAATTCCACTCCTGCATCCCACGGTTAGTCTGCTGTGCAGTCCTGGTTCTTAATGGCCAGTTTGAGGTTGTACCAGAAGATGGGCCTGAGCTCCTCGTCCTCTGGCCACTCCAGGTAGGTCCGGGAGTTCATGACCTGACGCAGCTTGCAGAACCTCTTGGGGATGGTCTCCTTGGGAATGGGCTCCAGCAGGATGAGCACGGCTGTGTCGGTGCTCTCGTCAAAGAGCCGGAAGTGGGAGAAGTCCAGCTCGTACTTGCACCACTCGCTGCTGACAAAGTGGCGTGACAGCACGAACAGCGTCTTGCGGCTCTGCTCGATGGAGTTGATGATGTTGTCCATGATCCACTTCCCAGGGAGGAAGTCTCGCTTGTGCAGGCAGAGCTTGAAGGGAGGCAGGACACTCTCCAGCTCCGCCACCAGGTAGTTCTCCACCCACTCGGAGTCCCTCTCGCTGTAGGACACGAAGGCATCGTAGCACAGCTCACTGCTCTGGGGCGCAGCGGGCTTCCTCTTGGCCCGGATCCAGGCCCAGCTCATTCTGAGGTACCACACGGCGTGCAGCTTGTAGCACAGGGTCCCCACAACCAGGAACGTCAAGGTCACGCCTGTGCAGAGCACCGCCACGACCGCGGTCATGTGACACTCGAAGACCGAGTGCCGGGCGTCTCGGACCAGGACTCCTCTCAGAGCCGTGGGGGAGTCGCACATGTAACTCTGAGGCCAGTCGGGCAGCCTGACCATGTGGAGGAGGTCCTGCTGCACGAACGCCACAAACTCGCAGGAGCACACATAGTTATTGTCACCAGCCTCCAGGGTGGTCAGCTTGCGGTGGGCCTGGAGCCCGCTCTTGGTCAGCCGGATGAGCTTGTTGCCCCTCAGGGACAGCATTGCCAGGCTGGGCAGCAGCCGCGCCTCAGGCAGGGTGACGAACTTGTTGCCCGAGAGGCGGAGCTCGGTCAGGAGAGGCAGTGTGACGGAGAAGACGGACAGAGCGTTGTTGCTCAGATCCAGGACATGCAAGCTCTTTGGGACGCAAGGCGTTAATGTGCGTATCTGACAGGAGGACAGGTTTAAGGTTTGGAGGTTAGGAGGCCAGTGACATTCCCGAGGCatctcagaaaataaattgagacTGAGCTGCAGGCAGGTGAGCTTGACCAGTCTGGTGAACAGCTGGCTTAATGGGCCGATAGACCTCAGCGAGTTCTTGGTCAAGTTCAGGACCTGAAGCTCTCTCCACACCCCATCTCCGTGGCAGGCCGACTCCTTCATGGCACTGTCAGTGAGCAGGTTGTCACTGAGGTCCAGAAACTCCACATGTCGAAAATTGCGAGACGTGTTGCAGGGGATGAGGAAGACTTTGCTGTTGATGATGGTCACTCTTGTGGTGGCATTCAGAAGGTTCTGGAAATAAGTCAGAGAACTGAAGGCATAGAAATCCAGGATCTGTATATTTCTGATGAAAAGAGTGTGCAGATACTTGGGCTGAACCAGCTTGGCTTTACTCCACTGGCCGTGTCCTGCAAGCTGGGAGTCTTCCACCCCCAGGTAGGTCAGCCTTGATGTCCCCAGGAGCAAGATAAAGGTCACCACGGCCTCGTCTGTCATGGACACGTTCCTAAATGTCAGCATCTCCCCGCCTCTCCGTCCAAATTCCCCAAGCGGCCGCATGGACTCTGCGTCAGTCAGTTTCAAGTCGGTGAGGGTCAGGTGTGTCTTGCTGCTGGACAGATCCCGGAGAACGCAGGATGTGAGATTGTGGTCCCGCACAAACGGGCCACGCAGACTCACCGTGGCAGAGTCCAGGCTCCGTAGGTAGCCAAAGCTGCCTTCTTCATACCGAAGCAACTCATTGCCATCCATCACCAGATCACCCAGCTGCTGGATCCCATCGAAGTCATGGCCACCCACGGCCTGGAACGCCGGGCCTCCAAACTGCAGGCTTCTCAAGCTCGCCAGGGGCAGGAAGAGCAGACCCTGCCCCAGAGTTTGGTAGGTGTTGCCCAGCAGGTTGAGGTGCTGCAGTAACGAAAGCTCGAAGAACCAAGACGGAGACAAATCGCTCAGCTGGTTGTAGGACAAGTCCAGGCTCTGCAGGTTCGCGAGGCTTGTGAAAGCTCGCTCATGGATGGAGTGAATCCTGTTGCCCTGCAAGCTCAGCGCTCTGAGCTGCAAGAAAGACCTGCAGTCCAATTCTGAGATCGCTTCAATGTAGTTGTAGGAAACATTGAGGCCCAGCACGTCCGCTATGGGAAGGGCAGGCATCTGCAGGAGTTTCTGCTCAGAGCAGTCGCACACCTTGTGCTCGTCACATCGCTGACACGTCGGCCTGCCGCTCACGCTGGGGGGACCGAGGAGGCACTGGGCCAGGAGCAGCAGAGCCGCAGCGAGTGACCCCATCCCGGACCTGAGACCAGGCTTTGCCACTTGTCTCGCAGATTCCAGAAGTGTGTTGCAG

Function

GO:

id name namespace
GO:0002224 toll-like receptor signaling pathway biological_process

KEGG:

id description
K10159 TLR2, CD282; toll-like receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00015989 True 4717 mRNA 0.56 11 32586700 32598705

Neighbor

gene id symbol gene type direction distance location
AMCG00015987 LOC105030636 coding downstream 79220 32499211 ~ 32507480 (-)
AMCG00015983 tdo2 coding downstream 186607 32395174 ~ 32400093 (-)
AMCG00015975 glrb coding downstream 336202 32229546 ~ 32250498 (-)
AMCG00015976 gria2,LOC106604527 coding downstream 378385 32164194 ~ 32208315 (-)
AMCG00015974 NA coding downstream 505684 32078493 ~ 32081016 (-)
AMCG00015990 sfrp2,LOC106602749 coding upstream 2118 32600823 ~ 32603839 (-)
AMCG00015991 NA coding upstream 41066 32639771 ~ 32676388 (-)
AMCG00015997 plrg1,LOC107757621,LOC107695461 coding upstream 83710 32682415 ~ 32689889 (-)
AMCG00016000 NA coding upstream 106132 32704837 ~ 32705938 (-)
AMCG00015998 NA coding upstream 110543 32709248 ~ 32714322 (-)
G102149 NA non-coding downstream 56106 32530271 ~ 32530594 (-)
G102092 NA non-coding downstream 223837 32362463 ~ 32362863 (-)
G102020 NA non-coding downstream 633052 31952908 ~ 31953648 (-)
G101996 NA non-coding downstream 762004 31824435 ~ 31824696 (-)
G101911 NA non-coding downstream 1615813 30892328 ~ 30970887 (-)
G102234 NA non-coding upstream 66067 32664772 ~ 32681331 (-)
G102237 NA non-coding upstream 99322 32698027 ~ 32698376 (-)
G102261 NA non-coding upstream 197400 32796105 ~ 32796333 (-)
G102281 NA non-coding upstream 298110 32896815 ~ 32897014 (-)
G102302 NA non-coding upstream 345474 32944179 ~ 32944499 (-)
AMCG00015985 gucy1a3 other downstream 129822 32449500 ~ 32456878 (-)
AMCG00015984 gucy1b3,gucy1a3,LOC107572203 other downstream 139735 32423128 ~ 32446965 (-)
AMCG00015979 NA other downstream 196688 32386913 ~ 32390012 (-)
AMCG00015965 NA other downstream 616413 31954646 ~ 31970287 (-)
G102017 rapgef2,LOC102783712 other downstream 641525 31908489 ~ 31945175 (-)
AMCG00016006 NA other upstream 310471 32909176 ~ 32938058 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019879 NA non-coding NC_007132.7 CM002905.2 44782268 ~ 44785206 (-)
grasscarp (Ctenopharyngodon idella) CI01000300_01360356_01366631 RNF175 coding CI01000300 null 1360310 ~ 1366631 (-)