G99937


Basic Information

Item Value
gene id G99937
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 17802158 ~ 17803919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU124835
GGAATGCATCTTTGACCTGGATAGCCTTCACCTCTAGATGATAGAGAGCTTTGTGACAGACCAGGGTGAGATTTCCATGTCTCCATTAATGCAGTAACAGGAGAAATTAGATTTAACAGGGGGTTGGACTGGTCCCTCACATCATGTCGTGAAAAAGACATTGTTCCTTGCGCTCCAATCTGGTAATGAAATGAATGTCCACCTGAATTAACACCCACAATAGCCGATGCCGGCATGTTATTATTCTCTTGGTAATAGCTGCCGTCGTTGGGCTCCTGCTTAATCCCCTTAGGCAAGACATTGTTAGGAAACGCATCAAGTTCATAATTACCATTCAATGAAGAAACAGGTGGTCCTAAAATCCCAGAAAGGCTGTATTCATCTATATTATCCCTCAAAGACAAGAAGGAGGTTTCAGAGACAGGGAAAAGGTTTAAAGAGTGTTCCTGCCTATTATAGTGATGGTTCATACAAGCTGCATCTTtatcagtttcagtttttatctGTGTAGCAAAAGGTGAACTGGGCAAATCTGGCTTCTCACTTAAAAGACACATGCTACTGAATCCAGTATCTGGTTCACTTTTTATATACTTCACCATATTCATCTGATCCAGGCCAACGCTATAGATTtccctttctgttttttcaacCTTTGGGAATTCAAATCCTTTAAACTCTTGGTCTCTGTTATCTGGGCTGTGAATGTCATTCTGAACAAGACCCAGTCCACTAGCAGGGCTAGACATAGGGAACCCAGTCGAATTATAAGGGGGACTATCAACAGTCACGTTTTTGACAGCTGCAGGACTAGAAATTGAGGCCCTCATattgctattgttattattgttactgcCAGGGCTAGATACAGAAGACCTCATGTTAGCATTACATGAAGCAGGTGACTTCACACTGCACATACTCTGGGGACTTGAGATTGGTGATCTCATTACATTAAGGGGACTAGCAAGTGGGGAACCCACATTACTTGTGTTGGTGGGGCTACAGGCAGCAGAATTTCTGGCATGAACATTAGCAAAAGTGGGTGCAGCAGAAGTATGGTTGATGGGGCTACTAACAGATGTGCAAGGATTTCCAATGTTAGATGGGCTGGTAGTAGAAGACACCAGATTGTTACTCGTCGGACTAGACATGGAGCTGTTTGAGTTCTGGGGGCTGCAACAGACAGACAAGGCCATACCAGAGGAACTGGCAGGGATGGCAACAGGGCACTCCATTGAAGGTGCAGTAGATGGCCTGGAGACTGCAGGGTAAGGGGAGGTTATAAAGGAACCCAAAGATTTCAATTTCGGGCTCAAAGCTGATGAAGACAGATTCTcctcatttttatacatttccccCTGTTGTCTGTTGTTGGAAAACAGCTTTCCAGGACTAGCATGACAGCCTCCCTGTACATTCTGCTGTCCAAAGCCATAGTCCACATCTCGTGCTGCATTCATATACAAGCCCATTGACTCAGCCACAGTTTTGGAAAGTTCCTTCGAGTCCATTTCCATCTTAATGCTATTGCTGTTGTGGTTTAAAACTGGGTAAACAAATGGCTGATTCTGCTTCAGGCAGACTGGGGACTGGTCCAGCTTTTTAATGCTGTCCTCCTTAAAGCTGGCTGTTGTGTTTGAAGCACAGCTAACATTTAGGGTCTCCATCAATGTGTTGCTTTCAGCATGACTTCCATCTTCCGAAGTACAGCGATGCTCCCTAGTTTTAGGCACTTGACCCCATCTTTTTCCATTGTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124835 True 1762 lncRNA 0.44 1 17802158 17803919

Neighbor

gene id symbol gene type direction distance location
AMCG00015713 NA coding downstream 254662 17523279 ~ 17547496 (-)
AMCG00015711 NA coding downstream 313556 17337333 ~ 17488602 (-)
AMCG00015712 mab21l2 coding downstream 469427 17331652 ~ 17332731 (-)
AMCG00015704 rps3a,rs3a coding downstream 670383 17127907 ~ 17131775 (-)
AMCG00015702 NA coding downstream 783776 17006122 ~ 17018382 (-)
AMCG00015717 NA coding upstream 167201 17971120 ~ 18028970 (-)
AMCG00015718 NA coding upstream 243272 18047191 ~ 18055915 (-)
AMCG00015719 NA coding upstream 267381 18071300 ~ 18072718 (-)
AMCG00015720 LOC107565324 coding upstream 298755 18102674 ~ 18121761 (-)
AMCG00015721 pou4f2,LOC102790387 coding upstream 633264 18437183 ~ 18437479 (-)
G99936 NA non-coding downstream 2661 17797309 ~ 17799497 (-)
G99923 NA non-coding downstream 97578 17648051 ~ 17704580 (-)
G99860 NA non-coding downstream 666975 17134927 ~ 17135183 (-)
G99830 NA non-coding downstream 797745 17001994 ~ 17004413 (-)
G99816 NA non-coding downstream 931039 16870642 ~ 16871119 (-)
G99941 NA non-coding upstream 101118 17905037 ~ 17905456 (-)
G99942 NA non-coding upstream 129081 17933000 ~ 17933328 (-)
G99944 NA non-coding upstream 148839 17952758 ~ 17957487 (-)
G99997 NA non-coding upstream 340357 18144276 ~ 18144517 (-)
G100019 LOC103376870 non-coding upstream 541315 18345234 ~ 18399021 (-)
AMCG00015694 NA other downstream 1190714 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 1266690 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 1328981 16467299 ~ 16473177 (-)
G99646 NA other downstream 1580003 16221765 ~ 16222155 (-)
G99605 NA other downstream 1699702 16017583 ~ 16102456 (-)
G99939 NA other upstream 33661 17837580 ~ 17837942 (-)
AMCG00015723 lsm6,LOC106610200 other upstream 823686 18627605 ~ 18630665 (-)
AMCG00015752 NA other upstream 2171037 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 2423448 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 4876775 22680694 ~ 22702249 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001359 nr3c2 coding NC_007112.7 CM002885.2 36935154 ~ 37087966 (-)
grasscarp (Ctenopharyngodon idella) CI01000049_04907578_04909938 NA coding CI01000049 null 4907445 ~ 4910923 (-)
striped catfish (Pangasianodon hypophthalmus) G40938 nr3c2 non-coding NC_047597.1 CM018543.1 4667206 ~ 4668993 (-)
tiger barb (Puntius tetrazona) G4166 nr3c2,LOC107550687,LOC107670737,LOC107742541,LOC107654985 non-coding NC_056699.1 CM032068.1 18213305 ~ 18215084 (+)
mexican tetra (Astyanax mexicanus) G4401 NA non-coding NC_035897.1 CM008300.1 17347662 ~ 17348010 (+)