G100039


Basic Information

Item Value
gene id G100039
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 18560715 ~ 18560947 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU124956
CACGTAACCTAAAAATGGTCATTTTCATCAGCAAGATTATTCAGAGTTGTGAAAGTGAACCTCAGATACAGACTCACCTGCCCAACAATAAGAGGTACCACCACAGTCATGAAGAGCTGAGAGAAGATGGAGGAGAAAGGCACTGAGGAGGAAGAGCCAAGCTGGAAAAGGAAGAACAAATGGAGCACTCAATCAATTAGTGTGATTAGTCAGggtaatagaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU124956 True 233 lncRNA 0.41 1 18560715 18560947

Neighbor

gene id symbol gene type direction distance location
AMCG00015722 pou4f2,LOC107550641,LOC101063993,LOC107670704,LOC102237073,LOC107742546 coding downstream 121566 18437740 ~ 18439149 (-)
AMCG00015721 pou4f2,LOC102790387 coding downstream 123236 18437183 ~ 18437479 (-)
AMCG00015720 LOC107565324 coding downstream 438954 18102674 ~ 18121761 (-)
AMCG00015719 NA coding downstream 487997 18071300 ~ 18072718 (-)
AMCG00015718 NA coding downstream 504800 18047191 ~ 18055915 (-)
AMCG00015724 NA coding upstream 40285 18601232 ~ 18617687 (-)
AMCG00015729 mmaa,LOC106610208,LOC107550599 coding upstream 179113 18740060 ~ 18770335 (-)
AMCG00015730 smad1,LOC105020940,LOC106610220 coding upstream 214413 18775360 ~ 18783878 (-)
AMCG00015732 abce1 coding upstream 269120 18830067 ~ 18839249 (-)
AMCG00015733 NA coding upstream 299314 18860261 ~ 18862808 (-)
G100038 LOC100136012 non-coding downstream 43986 18516451 ~ 18516729 (-)
G100019 LOC103376870 non-coding downstream 161694 18345234 ~ 18399021 (-)
G99997 NA non-coding downstream 416198 18144276 ~ 18144517 (-)
G99944 NA non-coding downstream 603228 17952758 ~ 17957487 (-)
G99942 NA non-coding downstream 627387 17933000 ~ 17933328 (-)
G100040 NA non-coding upstream 30505 18591452 ~ 18598196 (-)
G100102 NA non-coding upstream 175509 18736456 ~ 18737039 (-)
G100109 NA non-coding upstream 238623 18799570 ~ 18806676 (-)
G100185 NA non-coding upstream 571413 19132360 ~ 19132566 (-)
G100218 NA non-coding upstream 1064113 19625060 ~ 19699829 (-)
G99939 NA other downstream 722773 17837580 ~ 17837942 (-)
AMCG00015694 NA other downstream 1949271 16592228 ~ 16611444 (-)
AMCG00015691 NA other downstream 2025247 16524114 ~ 16535468 (-)
AMCG00015681 NA other downstream 2087538 16467299 ~ 16473177 (-)
G99646 NA other downstream 2338560 16221765 ~ 16222155 (-)
AMCG00015723 lsm6,LOC106610200 other upstream 66658 18627605 ~ 18630665 (-)
AMCG00015752 NA other upstream 1414009 19974956 ~ 19981557 (-)
AMCG00015761 herc3 other upstream 1666420 20227367 ~ 20279644 (-)
AMCG00015800 NA other upstream 4119747 22680694 ~ 22702249 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 5182843 23743790 ~ 23746703 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G133626 LOC107697034,LOC107739549,LOC107748698 unknown NC_056717.1 CM032086.1 16686125 ~ 16692945 (+)
mexican tetra (Astyanax mexicanus) LOC111194381 NA non-coding NC_035912.1 CM008315.1 31627040 ~ 31632925 (+)