G100754


Basic Information

Item Value
gene id G100754
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030132.1
NCBI id CM030132.1
chromosome length 32980562
location 22979822 ~ 22983984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU125841
CTCCACCCTGCAGGGTAATTACTGTTCAATCGTTTTCCCTTCTAACTTCACACTGCTGCGAATGCTCACAACACAATGCTGCAACAAGATGCCCCAGCCttagacgtgtgtgtgtgtgtgtaacagagCACAAACAGAGCCAATCTCTGTCGACAGAGTCATGAaatgaacatttattaaaagGAGTGAGTTTCTTACATACAAAAGCCTAATTGTAGAATCAAATgtctatacaaaaaatattcttTTGAGCTGGAGGAAACATTTTGATTGCACCTCGGAAACCATTCTGTGCCTTTAAAAAGTCATTACAATCCATTTAGCATCTGCAGTGCATTAAAAGACCCCTTTCAAGGACAGATAAAAAGCCCCACGCAGGCTTCACGGAATCCGAGTGACAAATGTGCCGTATTCTGTTttgaattgaataaatacatgaaggTATAATAAATGTCTACGTTCCTGCCTCCAGCATTAACAGCTCATACGAGACACAGAGCAGGCAAgtgtataaaaagaaaacaagtcaaCCCTTCACATCTGTGCCCACCTGTCATCCAGGCACTGTGCGGAGAAGACGggtaagaaaatacattaacgTTCGACTATCTGGTCTACTTGAAATGCCCCTCTGGAAGGGAAGAgtttgtagatttttttctgtgtctGCTTACAGGGTCTCTTGAGGATAGAATCAATCTAGATTAGCAACAGATTTGGTTTACTTTCTTGTTATACTCTAGAttgaaaattgtgtttgttcattAACAACAAGCTGTGACATCGCAGAAAGCTAAGCACAGACACGGTACAAAATGTCTCAAGGCAATCAGACATTGATTGTTAGTTACACCACTATCCCAGGGGCCCAGCCTAAAATCACCAGGCCTTCCTCCAGCAAAACAGTTTCCTTATCTATACTGCACATTTGTGGCATAAGACCCTGGGGTCCTGGGAATGAAGGCCACTGAGAGATCGTGAGCCTTCATCTTCTGTCGAGCTTCCCCGATTGCACATATGAAAAAGACTCCATCACAGAGACGCTCTCCGTAACCCTCCTCCTGGGCCAGACCATATTGTCTAGATGTGGATGAGCTCCATTCAAACAGTGATGCTGTGGGGTGAAGATTTAGCAGAAGGTACAAGGCAAATGCACATCAGCTCATCTGAGGCTTTACTATGCATCCTGTACGTTggcaactgtgtgtgtgaaagtgagaACAGCAGAATCCTGCTTCCTCATCTGCATGCAGAAGTGCTATTGAGTGTTGCTGACGAAGCGATGGGGTATTTAACATAACATGCTTGAAAGGAGATGATTAGGAGATGGGGAATCTGCAGTCAAAATATACAGATGAATGTGTAGTGCAAAGCGAGGTGCTGTGTAAACTgctaaatattgtattacatggAGCCAATGAGCCCAGTCTTCATTTCATACATCAAAAAACACGTTCAGTGTGTATTTAAAGTGTGACATCTATTAGACGTACTATAGTTTTCCAGAGACAGAATGCTTTAGGTAGACCCCCCGGGTGGTTAATTGCTATCCTAGACAAAAGACAAGGATATCAATTAACAGGACATGAGGTCTACCAAACAAATCTGTTGAGACACATTTATGGCTCAAAAGGGATGTTTAAATCCATACCTTCATTTGTGTAATCATTACTTTAGAAGCTGAATAGCGTAAGCATTTtaatcagtgttatttattatcagcAGGGCAATTGCTTCGGCCCTGTGAACTTGTGACGCTTAATAACAGCTCTGCAGCACAGAAACGTCCTGCTCTACTGGTCTGACAGGGTGCAAACACAGGCACAGGGATAGGGCTCAGCTTGTGGAGGCCACATGGGAAATAATGAGACATACAGTTaggtatataaatatttggacagtgacacaattcaCATCAtattggctctgtacaccaccacaatggatttgaaaggaaacaatcaaggtgTGCTTTAAATGgagattttcatctttaatttgagggtacaTTGGGTGAACGGcataggaattacacccatttttagatgtggtccccccaattttaggggctagaaactatttggacaaactaacataatcaataattaaattgtgagtttcaatacttggttgcaaatcctttgcagtcaatgtctgcctgaagtctggaacccatagacatcaccagatgctgggtttcttccctggtgatgctctgccaggcctgcactgcagctgtctttagttcctgcttgttcttggggtgttttgccttcagttttgcctcagaaatcaaaacaattagAGATAGCAAAACTAtctggtacattcttaaaaagaaagaacacacaggtgagctcaggaacaccaaaaggcccagaagaccacagaaaacaactgtggtgggtGACagattatttccctggtgaagaaaaaccccttcacacagttggccagatcaaaaacaccctccaggaggtaggcatatctgtgtcaaagtcaacaatcaagagaagacttcaccagagtaaatacagaggattcaccacaagatgtaaaccattggtaagccccaaaaacaaaaagaccaGATTAGTTTGCCAAAACATATCTAacaagaaccctgtacagttctggaacaacatcctatggacagatgagacaaagatccaCTCCTACTTGCCTAATGGTTTACTTTTacgattttcttttttgcattacTAACACAAAACTTGTGTGGTTGTTTTAATAACTGATGCGCTCAGTAACAACTTTGCAAGGggcataacattaaaaaacaaagaaataaaaaagaaaccataTGGAGAAGGGCATGTATTCCAAGTAATACGGCAAGTCTGTGGTCACAAAGCCCTTTCACCCCCAGTGTGCTGACAGAGCTGGGTACTGACCTTCAGCGGCAGGCTTGATGTCGATGACACGGAGGTGTGGGTTAGGCACGGGCGCCGGGCACAGGTCGCCCAGACTGGGTATATCGGGCAGCGTGAACACAATCTCGTACTTGTGCTGGATCTTCAGAAAGCCAAC

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

RNA

RNA id representative length rna type GC content exon number start site end site
TU125841 True 3048 lncRNA 0.43 2 22979822 22983984

Neighbor

gene id symbol gene type direction distance location
AMCG00015808 NA coding downstream 36518 22932425 ~ 22943304 (-)
AMCG00015809 NA coding downstream 93434 22881987 ~ 22886388 (-)
AMCG00015805 NA coding downstream 185922 22792701 ~ 22793900 (-)
AMCG00015804 NA coding downstream 199784 22770705 ~ 22780038 (-)
AMCG00015802 NA coding downstream 243271 22730356 ~ 22736551 (-)
AMCG00015812 LOC107664486,LOC107586827,LOC107732002,LOC107719377 coding upstream 6594 22990578 ~ 23042557 (-)
AMCG00015821 NA coding upstream 299437 23283421 ~ 23286065 (-)
AMCG00015828 NA coding upstream 773646 23757630 ~ 23859314 (-)
AMCG00015832 NA coding upstream 1090374 24074358 ~ 24084865 (-)
AMCG00015831 fgf20b,LOC107752074,LOC107661435,LOC107565709,LOC103374382 coding upstream 1227658 24211642 ~ 24215029 (-)
G100733 NA non-coding downstream 56415 22835253 ~ 22923407 (-)
G100703 NA non-coding downstream 162409 22816937 ~ 22817413 (-)
G100684 NA non-coding downstream 258457 22720938 ~ 22721365 (-)
G100680 paip2b,LOC103027680,LOC107551309,LOC108263850,LOC107674237 non-coding downstream 264863 22712783 ~ 22714959 (-)
G100636 NA non-coding downstream 786513 22192976 ~ 22193309 (-)
G100780 NA non-coding upstream 173145 23157129 ~ 23215066 (-)
G100815 NA non-coding upstream 338061 23322045 ~ 23322253 (-)
G100832 NA non-coding upstream 612503 23596487 ~ 23596695 (-)
G100871 NA non-coding upstream 938457 23922441 ~ 23933536 (-)
G100895 NA non-coding upstream 1072796 24056780 ~ 24057144 (-)
AMCG00015800 NA other downstream 277573 22680694 ~ 22702249 (-)
AMCG00015761 herc3 other downstream 2700178 20227367 ~ 20279644 (-)
AMCG00015752 NA other downstream 2998265 19974956 ~ 19981557 (-)
AMCG00015723 lsm6,LOC106610200 other downstream 4349157 18627605 ~ 18630665 (-)
G99939 NA other downstream 5141880 17837580 ~ 17837942 (-)
AMCG00015825 LOC106569940,LOC107700648,LOC107717728,LOC108274877,LOC107565247 other upstream 759806 23743790 ~ 23746703 (-)
G101067 NA other upstream 2008969 24992953 ~ 25000890 (-)
AMCG00015892 spcs3,LOC106602378 other upstream 5002771 27986755 ~ 27997677 (-)
AMCG00015891 wdr17 other upstream 5057579 28041563 ~ 28069876 (-)
G101456 NA other upstream 5177853 28161837 ~ 28257732 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G29263 NA unknown NC_047596.1 CM018542.1 17949157 ~ 17949718 (-)