AMCG00016138 (pds5b,LOC107683122,LOC107730842,LOC107587120)


Basic Information

Item Value
gene id AMCG00016138
gene name pds5b,LOC107683122,LOC107730842,LOC107587120
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9002102 ~ 9027841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016138
gcttctctctctctctccagggagCACTGATTGGAGACCATGGCTCACTCCAAGACCAGAGCCACCGATGGCAAGATCACCTACCCCCCGGGGGTCAAGGAGATCTCTGACAAGATCTCCAAAGAGGAGATGGTCCGAAGGCTAAAGATGGTGGTGAAGACCTTCATGGACATGGACCAGGATTCGGAGGAGGAAAAAGAGCTCTACCTCAATCTGGCCCTCCACCTGGCCTCTGACTTCTTCCTCAAGCACCCTGACAAGGACGTGCGTCTGCTCGTGGCCTGCTGCTTGGCCGACATCTTCAGGATCTACGCTCCGGAGGCGCCCTACACCTCGCCAGACAAGTTGAAGGATATATTTATGTTCATAACAAGGCAGCTGAAAGGACTAGAAGACACCAAAAGTGCTCAGTTCAACAGATACTTCTATTTACTTGAGAATATTGCCTGGGTGAAGTCCTACAACATCTGTTTTGAGTTGGAGGATAGCAATGAAATCTTTACGCAGCTCTACAGAACACTATTCCAAGTCATAAATAATGGCCATAACCAGAAGGTGCACATGCACATGGTGGATCTGATGAGCTCCATCATCTGTGAGGGGGACACGGTGTCTCAGGAGCTGCTGGACACTGTTCTCGTGAACCTTGTGCCGGCACATAAGaatttaaacaaacaggCTTACGACTTGGCCAAAGCCCTGCTGAAGAGGACTGCGCAGGCCATTGAGCCGTACATTACTAATTTTTTTAACCAGGTGCTGATGCTGGGGAAGACCTCGGTCAGCGACCTCTCTGAGCACGTGTTCGACCTGATTCTGGAGCTGTACAACATCGATAGCCACCTGCTGCTCTCCGTCTTACCACAGCTGGAGTTTAAACTGAAGAGCAATGATAACGACGAGCGCTTGCAAGTTGTAAAGCTGCTAGCCAAGATGTTCGGAGCAAAGGATTCTGAGCTGGCAGCGCAGAACAAACCTCTTTGGCAGTGCTACCTTGGAAgGTTCAATGATATCCATGTCCCTATACGACTGGAATGTGTGAAGTTTGCAAGCCACTGTCTTATGAATCACCCCGATTTAGCCAAAGACCTAACAGAGTACTTAAAAGTGAGATCGCACGACCCAGAAGAAGCCATCCGACATGACGTGATTGTGTCCATTGTCACGGCTGCTAAAAAAGACCTGTCTCTCGTCAACGACCACCTGCTGAattttgtgagagagagaacattgGATAAAAGGtgGAGGGTGAGAAAGGAAGCGATGATGGGACTTGCCCAGATCTATAAAAAGTACTCTCTGCAAGGGGAGGCAGGAAAAGAAGCAACCAAACAGATCTCGTGGATAAAAGACAAACTGCTCCACATCTATTACCAGAACAGCATTGATGACAGGTTGCTTGTGGAGCGGATCTTTGCCCAGTATATGGTCCCTCACAACCTGGAAACTACAGAGAGGATGAAGTGTCTATATTACCTTTACGCAACATTAGACTTCAATGCTGTGAAAGCTCTCAATGAGATGTGGAAATGCCAAAACATGTTGAGGCATCACGTGAAAGACTTGcttgatttaataaaacagcCAAAATCGGAGGCCTCCACTAAGGCAGTGTTTGCCAAAGTCATGGTCATAACAAGGAACCTACCAGATCCTGGCAAAGCCCAAGACTTTGTGAAGAAGTTAGCCCAGGTTCTCGAAGAGGATGAGCGGATCAGGAACCAGCTGGAGACCCTGGTCAGTCCATCCTGCTCCTGCAAACAGGCCGAGGGCTGTGTGAGAGAAATCACAAAAAAACTTGGAAGTCCCAAACAGCCGAGCAACCCGTTCCTGGAGATGGTCAAATTCTTGCTGGAGAGGATCGCTCCGGTCCACATCGACACTGAGTCCATCAGCGCCCTCATCAAACAAGTCAACAAGTCCATAGACGGCACTGCGGATGACGAGGACGAGGGGGTTCCCACGGAGCAGGCCATCAGAGCCGGCCTGGAGCTGCTGAAGgTCCTTTCGTTCACGCATCCTGCCTCTTTCCACTCTGCGGAGACCTTCGAATCTCTGCTGGGCTGCCTGAAGATGGACGATGAGAAGGTGGCAGAGGCGGCACTACAGATTTTTAAGAACACTGGCGGCAAAATGGAAGAGAGCTTCCCTCACATCAAATCGGTACTGCTTCCAGTCTTGCAGCACAAGGCCAAAAAGGGCCCCCCACGCCAGGCCAAATACGCCATTCACTGCATTCATGGCATCTTCTCCAATAAGGACACACAGTTTGCACAGATATTTGAACCACTTCACAAGAGTTTGGATCCTGCCAGCCCAGAACAGCTCATCACCCCATTAACAACCATTGGACACTTGGCAATGCTGGCTCCAGAGCAGTTTGCAGCTCCCCTGAAATCCTTGGTAGCGAATTTCATTGTGAAGGACCTATTAATGAATGATCGGGTTCCAGGCAAAAAGACAACAAAGCTCTGGGTGCCGGACGACGAGGTGTCGCCAGAAACGTTGGCCAAGATCCAAGGCATCAAGCTGATGGTGAGGTGGCTGCTGGGAGTTAAAAACAATCTGAGCAAGTCGGGGAACTCCACACTGAGGATGCTAACCGCCATCTTAAACAGCGATGGAGACCTGACGGAGCAGGGCAAAATGGGGAAACCAGATATGTCTCGTCTGAGGCTGGCGGCAGGGTGTGCAGTCCTGAAGTTGGCGCAGGAGCCCTGTTATCATGAAATCATCACCCTGGATCAGTATCAGCTGTGTGCTCTAGTCATCAATGACGAATGCTATCAAGTGAGGCAAGCGTTTGCTCTGAAGCTCCACAAAGGTCTGTGTCGGTTACGGCTGCCCCTGGAGTACCTGGCCATCTTTGCTCTGTGTGCCAAAGACCCCATGAAGGAGAGGAGGGCCCACGCCAGGCAGTGTCTCGTGAAGAACATCAACATCCGCAGGGAGTACCTGAAACAACACGCAGCCATCAGTGAAAAGCTGTTCTCGCTCCTGCCAGAGTATGTGGTCCCATATACGATTCACCTCCTCGTTCACGATCCTGATTATGTCAAAGTCCAAGACATCGAGCAACTAAAAGATATCAAAGAgtgtttgtggtttgttttagaAATCTTAATGTCGAAAAACGAGAATAACAGCCACGCATTCATTAGGAAAATGGTGGAAAACATCAAACAGACAAAGGACGTCCAAGGGCCAGACGATCCCAAGCTAAATGAGAAACTCTACACAGTGTGTGATGTGGCTATGAACATCATCATTTCTAAAAGTACCACCTATAGCCTGGAGTCTCCCAAGGACCCCGTGCTGCCTGTCAGATACTTCACTCAGCCAGACAAGCCCAAAGCTGCCAACGTCCTGGGTGCAGTGAACAAGCCCCTGTCCACGGCGGGGAAGCAGTCCCAGACCAAGTCGTCGCGCATGGAGACCATCAGCAACGCCAGCAGCAACTCCAACCCCGGTTCGCCAGGGAGGAGTAAAGGAAGGTGGGGGCGCGGGGGGGCGCTGCTGACGTCAGTGCTGATGCAGGCGGCCCCGGCCGAGCCGTGGAGACTTGACAGCACAGAAATGGACCACAGTGAGAATGAAGACATCACTATAATGAAGAACTCTCCATTGCCGGGGAAGAAGAATGACAAGAGGGACGACTCCGATCTCCTGAGGGACAGCGACAAGCCCCGGGGTCGGAAGAGGGCAGCAGCGTCCACTCAGGATGGGTCTCTGCTGGAGGACTCGGGCCAGGACCAGAAGCCCAAGAGGGGCCGCAAGCGGGCGGCCAACAGTGCGCCGGCGGAGGCAGAGGAGCAGCCGTGGGCCGAGGAGAAGCGGATACAGGACGGTGTCCTGGAGACGGAGGACGAGCAGAACAGTCCGCCCAAGAAGGGCCGGAGGGGTCGGCCGCCCAAGGCCGCCAGCAGCGCCGCGGCCAAGGAGGAGACCCCGGCCAAGGGCAGGAGGGGCCGCAAGAAGGCCGTCGTCCCGGCAGAAGAGGAGCCtgagcagcaggaggaggaggaggaggagcccaACAGCGAGAACATGGAGGTCAAACCGAAAGGGCGGCAGACCAGGACACCCCGCAGGTCTCAGCAGAGGGAAGACACTGCGGAGACGCCAGACGACTCGGTCGAATCCACGCCACAGAAGAGAAGAGGGCGACCCCCGAAAGCAGCCCAGGCACAGCCGAAGAAGAACACCCGCAGTGCGCGCTCCAAAGCGGCGGCCAGCAAAGAGAACGACTCGGCGGACGAGATGGAGGTGTCTCAGGAGGCTGAAGACGACGCCGCCCccgaggaggaagaggaggaggaggaagcagcagcagcagaggaggaggaggaggaggaggaggaagaggaggaggaaaccAGCAGCACTCTTAAAGTAAATTGCTCCACATAA

Function

symbol description
pds5b Predicted to enable DNA binding activity. Predicted to be involved in DNA repair and mitotic sister chromatid cohesion. Predicted to act upstream of or within cell division. Predicted to be active in chromatin and nucleus. Is expressed in several structures, including cranium; digestive system; nervous system; optic cup; and otic vesicle. Orthologous to human PDS5B (PDS5 cohesin associated factor B).

NR:

description
PREDICTED: sister chromatid cohesion protein PDS5 homolog B isoform X2

GO: NA

KEGG:

id description
K11267 PDS5; sister chromatid cohesion protein PDS5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016138 True 4410 mRNA 0.53 33 9002102 9027841

Neighbor

gene id symbol gene type direction distance location
AMCG00016137 NA coding downstream 11682 8981080 ~ 8990420 (-)
AMCG00016133 rfc3,LOC107589808,LOC107728889,LOC107577751 coding downstream 181394 8810847 ~ 8820708 (-)
AMCG00016131 nbeaa coding downstream 330924 8657202 ~ 8671178 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding downstream 357754 8594090 ~ 8644348 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding downstream 507519 8435120 ~ 8494583 (-)
AMCG00016139 NA coding upstream 23219 9051060 ~ 9055579 (-)
AMCG00016141 NA coding upstream 61328 9089169 ~ 9110807 (-)
AMCG00016142 NA coding upstream 83436 9111277 ~ 9116154 (-)
AMCG00016144 NA coding upstream 91727 9119568 ~ 9183910 (-)
AMCG00016148 rxfp2,LOC106591039 coding upstream 239360 9267201 ~ 9289324 (-)
G11346 NA non-coding downstream 670299 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 681060 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 828128 8173689 ~ 8173974 (-)
G11309 NA non-coding downstream 863432 8136414 ~ 8138670 (-)
G11300 NA non-coding downstream 876719 8124990 ~ 8125383 (-)
G11482 NA non-coding upstream 28063 9055904 ~ 9059100 (-)
G11571 NA non-coding upstream 286159 9314000 ~ 9314447 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding upstream 407961 9435802 ~ 9498753 (-)
G11650 NA non-coding upstream 515667 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 561894 9589735 ~ 9594953 (-)
AMCG00016134 NA other downstream 174342 8823545 ~ 8827760 (-)
G11326 NA other downstream 807670 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 878069 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1248665 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4072202 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 1806571 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2738311 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 2804587 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 3295320 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 3822037 12849878 ~ 12870560 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009373 pds5b coding NC_007126.7 CM002899.2 33744549 ~ 33807758 (-)
grasscarp (Ctenopharyngodon idella) CI01000095_01762546_01807415 PDS5B coding CI01000095 null 1762032 ~ 1807474 (-)