AMCG00016129 (LOC106612894,LOC102298628,LOC102206684,LOC101482631)


Basic Information

Item Value
gene id AMCG00016129
gene name LOC106612894,LOC102298628,LOC102206684,LOC101482631
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8435120 ~ 8494583 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016129
GTTTTGGCATATTCAGAAGGCCTCCATGGAAAATGGATGTTCAGCGAGATCAGGGCGGTGTTCTCCAGGCGCTACCTGCTCCAGAACACTGCTTTGGAAGTGTTTATGGCCAACAGAAcTTCTGTTATGTTCAACTTCCCTGACCAGGCCACCGTGAAGAAAGTGGTCTACAGTTTACCCCGCGTTGGAGTTGGTACTAGCTATGGCTTGCCACAAGCAAGGCGAATCTCCCTGGCTACCCCTCGGCAGCTCTTCAAGTCATCCAACATGACACAGCGCTGGCAGAGACGGGAGATCTCCAACTTTGAGTACTTGATGTTCCTCAACACTATTGCAGGGAGGACGTACAATGATTTGAACCAGTACCCTGTCTTTCCATGGGTCCTCACCAACTACGAATCGGAGGAACTGGACCTCACTCTCCCAGGCAACTTCAGGGATCTCTCAAAGCCTATTGGAGCACTGAACCCCAAGCGTGCGGTCTTCTACGCCGAGCGCTACGAGACATGGGAAGACGACCAGACGCCCCCTTATCACTACAACTCCCACTACTCCACCTCCGTGTGCACCCTGCAGTGGCTCGTGAGAATAGAGCCTTTCACCACATTCTTCCTCAATGCCAATGACAGCAAGTTTGATCACCCTGACCGCACGTTCTCCTCCATCGCCCGGTCGTGGCGGAACTGCCAGCGGGACACCTCCGACGTCAAGGAGCTGATCCCAGAGTTCTACTATCTTCCCGAAATGTTTGTGAACAGCAACGCATATAATCTGGGGGTTAGAGACGACAGGACTGTTGTATCAAATGTTGATCTCCCCCCCTGGGCGAAAAAGCCAGAAGATTTCGTCAGGATAAACAGAATGGCCCTGGAAAGTGAGTTTGTGTCATGTCAGCTGCATCAGTGGATTGACCTCGTTTTTGGATACAAGCAGCGTGGACCGGAGGCGGTGCGCGCACTCAACGTCTTTCACTACCTGACGTACGAGGGCTCCGTCAACCTGGACAGCATCACAGACCCGATTCTCAGAGAGGCCATGGAGGCACAAATACAGAATTTTGGACAGACGCCATCTCAGTTGCTTATTGAGCCACATCCGCCTCGAAGCTCTGCCATGCACCTGAGTCCTCTCATGTTCAAGGACCAGATGCAACAGGATGTGATAATGGTGCTGAAATTCCCCTCCAACTCTCCCGTCACTCACGTGGCCGCCAACACGTTGCCCCACCTCACTGTGCCCGCTGTGGTCACGGTGACCTGCAGTCGCCTGTTTGCGGTCAACCGATGGCACAACACCGTAGgtcTCCGGGGAGCGCCAGGATACTCACTGGAACAAGCTCATCACCTGCCCATTGAAATGGATCCGTTAATTGCCAACAACTCTGGGATGAACAAAAGGCAAATCACAGACCTGGTGGACCAGAGTATCCAGATCAACACACACTGCTTTGTGGTGACTGCGGATAACCGCTACATCCTGGTCTGTGGGTTCTGGGACAAGAGCTTCAGAGTTTACTCCACAGAAACAGGCAAGCTGACCCAGATTGTGTTCGGTCACTGGGACGTGGTGACGTGCCTGGCCCGGTCCGAGTCCTACATCGGGGGAGACTGCTACATCGTGTCGGGCTCCCGCGACGCCACCCTGCTGCTCTGGTACTGGAGCGGGCGGCACCACATCATCGGAGACAACCCCAATAACAGCTCTTGTTACTCGGCCTGCAGCGGGGCTGTGGGCCTGAGGGGCCCCATGGTAGCCTGCTCTCCCGGGGGCTGCCCTCTCTCCTGGGCCGAGACACCGACCATCAGGGCCCTGATGGAGTGCTCCTCTGAGAACGGGCAGCATGTGTGCGCAGGTGACTACCCGGCACCCAGGGCCGTGCTGACCGGTCACGACCATGAGGTGGTCTGCGTGTCCGTCTGTGCAGAGCTAGGACTGGTCATCAGTGGAGCGAAAGAGGGGCCGTGTCTGGTCCACACCATCACGGGGGATCTGCTGAGAGCTCTGGAGGGCCCGGAGAACTGTCTCTGCCCACGCCTCATCTCCGTGTCCAGCGAGGGCCACTGCATCATATGCTACGAGAGAGGCCGCTTCTGCAACTTCAGCATCAACGGAAAACTCCTCGCCCAGATGGAGATCAACGACTCTACCAGGGCCATTCTCTTGAGCAGTGATGGCCAGAACTTGGTGACGGGAGGCGACAATGGAGTTGTGGAAGTATGGCAGGCCTGTGACTTCAAGCAGCTCTACATCTACCCAGGCTGCGACGCTGGCATCAGAGCGATGGACTTATCGCACGATCAAAGGACTCTCATAACTGGAATGGCTTCTGGGAGCATCGTGgcttttaatattgattttaaccGGTGGCACTACGAGCACCAGAACAGATACTGAGCAGGAAGAGATGAGGGGCGACGGTGGGAATGTCAGGTGCCAGACGAGAGGACACTGGCTGCAGGGGACCTCTGGTGTCGAAGGAAGACAGAACTGAGAACTAAGACAAATCGAGAGACTGCAGCATCTTGCCTCCTGATGTACATTCCATAATGCCCGGCAATAGCAGTACATTGTAGTTAGAAAACAtttgagtttgtgttttaattcacGCCTGAACACcagctgctaataaaataaataaaagctacCTTGTATCATGTGAGTTCACCAATCTGGAGATCGTTTCTGTCAGTCTGATTTCCAACTCAGTTCTTCAATAGGGAGGGGTGGAAGCGTTCATCGCAGATACAGactttgaaaggaaaaataaaacggTAAACACTtctaaatgattaaatacatgaattgaACTATTTTAGACTAAGCTTTTCGTCCTGACTTATATCATATTTTTCaagctgtgaagaaaaaaaactaaatgaatacaACCACATTTGATACTTTGTACATCAGATGCACATCTTACCTTAAAgggatacttttttttttttttgtaaaaccttgtataaaagaacaaagaaaaaaaaaaaagcatttcttaTCCAGATGTGGAGTTTCATTCTGCATGTATTGTAAATCTGGTGTATAAGTGGAACAGATGCATTTACGAAGCTTAACCTTGAATATCTGCTACAAATGTTGGCTTGGTTCACAGAAGTAGGCCTTGCCACATTTTCACTAAGGGTCCCTGCCGTGATTCTTGCTCCACCCTCCTGTCTTTGAAAACATAGCTGGTGTTTGGTTACTAATTTTTACCTTTCCACGTGCCCACTTTACACTTCGTATCTGGGCCAACTTTTCAatgtgaaagaaacaaaactattgacttttctttttaccaTATTTCTTTTAACTGTAATAAGCAAAGCCCATTTCATGTGCTTAACAATGAAAcacctatataaatatataaaccttgTAAATGCAGTTTGTTTCCCAATCACAATGTACAATTATTTGAGAAGGAAACAAAGTTCATTGTGAAAATATCATCCTTGTTCAATTTTCAGGTCACTacaggtttatttattcataatttactGTCTGTAAAAAAGAGCGAGCGAGAAACCACAAATACAAACAGTTGGTTCTTACAACAGGCCTTTCTTGCTCATTGTTAAATCTCGGACAACTTCATCCAGGggtaaaccatttaaaatcctTCATGTTCTTCTTTGTATATTTGGTGACTGTTTTGTCATAGATGTACATATTGTGTTGGTAGGGCTATGAGGCATGTAATGGGAATGTAATTTTCTcaagactaaaaacaaaaaaagaaaaaaaaaagttacactcacttgcagtcatttatttaagacaaattaattaatggaatCTTTGTATTGGCACTTTGCACCGGAaacatatcattatttattgctGTGATTACTTATCTGTCATCCACCGTGTATTAGTAAGTTTTAGCACTGAATTCTTTACTCattgttgtttgtatttaaagaatATGAAATCATGGGGAAACCAGTGTAATGATTAAGTTGTACAACCACAAGTCAGTAAGCAATATCATGAGTTTGTAGCTTagaatgggggggtggggggtatttACGAATCTGGatcaatcaaacacacaaaaaagggcaaaaaagaagcagaaatagatTTATGtcatccaaaaaataaaatacggTGAAATATTTTGGATATATAAAATCCTTCAAGCTACTGTAACCATGTTTTATTGCAAAGATGTAAAATATGCCAGATGTGTGTGAGTTGgaagtttaaaagaaaataaaatatgcaaagaaCTCAAtgatttgccttttctttttccctggCGTTTGTACAGCTAACCATCCCAAATGGAAAAGCCGCTTGTGCATGAAAGAACATGGCAGTTCTTTGGATGAAATGGGTTGGTACTGTAATAGTTTGTTCTTCTGTTCCCTTTACTGTTTAtgctttgtaattttattttccaataattGGAAATTATaaaagatttcatttttttaagtggtgGATAGTTTGAGGTCCTATTGTACTGTTGCAAGAAAACTGTTCAAGAAGCACTActtctgttatttatataagtactactgtttttttgtttttcttcatattttgtttgaaaatatttacattctgGGTTCTTAACTGTCTtcacctgctgttttttttttttttgtatgttg

Function

NR:

description
PREDICTED: neurobeachin-like isoform X5

GO: NA

KEGG:

id description
K24183 NBEA; neurobeachin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016129 True 4619 mRNA 0.45 18 8435120 8494583

Neighbor

gene id symbol gene type direction distance location
AMCG00016127 NA coding downstream 1935 8416250 ~ 8433185 (-)
AMCG00016125 NA coding downstream 77634 8355679 ~ 8357486 (-)
AMCG00016118 NA coding downstream 296057 8138734 ~ 8139063 (-)
AMCG00016111 NA coding downstream 400368 8030925 ~ 8034752 (-)
AMCG00016107 frem2b,LOC106581006,LOC106612873,LOC108433801 coding downstream 818822 7608507 ~ 7616298 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding upstream 99507 8594090 ~ 8644348 (-)
AMCG00016131 nbeaa coding upstream 162619 8657202 ~ 8671178 (-)
AMCG00016133 rfc3,LOC107589808,LOC107728889,LOC107577751 coding upstream 316264 8810847 ~ 8820708 (-)
AMCG00016137 NA coding upstream 486497 8981080 ~ 8990420 (-)
AMCG00016138 pds5b,LOC107683122,LOC107730842,LOC107587120 coding upstream 507519 9002102 ~ 9027841 (-)
G11346 NA non-coding downstream 103317 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 114078 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 261146 8173689 ~ 8173974 (-)
G11309 NA non-coding downstream 296450 8136414 ~ 8138670 (-)
G11300 NA non-coding downstream 309737 8124990 ~ 8125383 (-)
G11482 NA non-coding upstream 561321 9055904 ~ 9059100 (-)
G11571 NA non-coding upstream 819417 9314000 ~ 9314447 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding upstream 941219 9435802 ~ 9498753 (-)
G11650 NA non-coding upstream 1048925 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 1095152 9589735 ~ 9594953 (-)
G11326 NA other downstream 240688 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 311087 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 681683 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 3505220 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 4514617 3886298 ~ 3920503 (-)
AMCG00016134 NA other upstream 328962 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 2339829 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 3271569 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 3337845 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 3828578 12323161 ~ 12329033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002265 nbeaa coding NC_007121.7 CM002894.2 34426256 ~ 34734995 (+)