G11309


Basic Information

Item Value
gene id G11309
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8136414 ~ 8138670 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU14003
GTTGCAATTCCATATTTATTGTTGCATATTTGAACCCAGTGCACAGatgtaatgaaacaaaatacatgcacatacttattctcactctctctctcatctctcacacacacacacacacacacacacacacacacaaagcatttGCTCCATAATTTAAGCGGACAATGATATGAAGTTTTTAATTCTTCTTAAGATCACAGCTAATACTTCTGAATGACACCTACACTAAACATTGAAATACAGTTATAAACAGTACAATAGTGAAAGCATACATTGGCTTGCCCGTTGAGGcaggaaatacatatatattaaaaaaatcaaacaaggGCAATCTTATTTTCTTAACAGAGCTAAATAGCATACAGGGACTAAAAGGTTTCTTTTAGACTTATGAATGTGCTTACTGTTTATTGCTTTATGCTTTTGTTAAATACTACAGAAAATGTGATATGTGGTTTACCAGAACTGTGTagttgttttgttgtatatCAGCACAGGCAGTGGAAAACATTCATGcgattaagatttttttaagaatattttctCGTCAAAATTGTATAGAAACATTAATGGGACGAgaatattttcataatgtatcaTTTCCCCATAGttgaagcagaaacaaaataatagcCCTAACATGCATTGGATGTTTAGATACTTAGATGCTTAGACAATGTTTCAGTCATGATACAGGATAATAACATCCATAACTCTTCCTCACAATTTGGACATTCTGTAAATTAGCTGGACTACAATCCATTTAAAGTCAAGCTATAGTATTTGGAACAGATGTTGAGTGGATCTCCAGAAGTGGTTATGTTATGTTAATCCACATAATAGGAATAACACAATTTATTTGGTTGGTCTTTCGCTTCCCTGTTCTATAGTATGATCTCTATTCCCCTTCTCCTCCTATTACTACTACTCCTAGGATCTCTTTTTGCATTcccaaaacaataacataaaataaacaagtctCATTAGTCATCTGCTCTGATCTCTGTGACCTCAGTTGTCtcaatttaaaaagcaggaaagtataatattcatacattttagatttattcaAAGATATACACAACAAACAACCCCATAGACCAAACTTGACCTgatgagaaaaataagaaaatgtccaAACTGTTTTAGGGACAGGCTGAGGGGAAGAACAGGGTCATACAGCTTTGTCAGAAGACAAATCTCTTAATCATTGACTACAACACTTCAGcttcctccagagggaagaaaTTCCTCTCAATGTCAGACCCTTGTCAATTCTTGCCTGAAGACATGGAATACAAACATATGTAACTGATTCAGAAGCTTATGATTCTTACCAGACGACTGAAGGCAATCTTAAGTAAATTCAAAGTTGATTGAATCCTTGACATGAACTTAATCCCATGCCGCTGGTAGCTCCAAATGCAGACTACAGCTAAAGCATTTGTCTGTGAGATATTTGAGACTCCATTTACTGTAAAATTCCTGTAAAAAGTCTTTGAGCATCTTAAAACACTTCTGTGCATTTGCAGACtacttctattttatttatttatttgataacgGGATTTCATTTAAGAAGGAAAGGATAGCCTTAACCACTGAGTTAAGCAATCATGTAGAAGCTTCAATTTTGTAAGaccaattttatattttggtatATGCTCGGGAAATGTAtccctgttttaaaaaatatatccaatTAAGCATCCAAAGTTTCAGATCTTACTGTAAAGTGCAATTCAAATGCTTCTGACTGCTttccaattatttaaatatactttgtCATCCTCTGAACGAGAACAAAAGCTAAATATAGGTCACTCTTCCATCTGTTATATATCCCTTTAACATCAGATGTCACACTATTTGTTAGCTGCCATTTAGGCTATTCTGGATATCTTGTGTCTGGAGAAAAAACTGCAGCGGAACAATGAAGCATGCGTCCTATATTATAGAAATCAATTCAAACCAATTTCATGTTTCTTCTCATGGAAGAATACAAGATTGCTTTAGATCAAAACCTTTTTGAAACTAAATCTGACCTGCTTGCATATTTGttgaataaattacattgtGACTATAAGAAGTATTCACCGCCCTTGACATTTTGTTGGGTTACCACCTAATGTTTTGATGCATTGAAATGGGATTTGTGTCCCTTTgctttacacaacctactccacactgtcaatgtgggaaaaaaaaaatcaaatattcaattaaaaataaaaacctcagtTAAATGGGTTCtatc

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU14003 True 2257 lncRNA 0.44 1 8136414 8138670

Neighbor

gene id symbol gene type direction distance location
AMCG00016111 NA coding downstream 101662 8030925 ~ 8034752 (-)
AMCG00016107 frem2b,LOC106581006,LOC106612873,LOC108433801 coding downstream 520116 7608507 ~ 7616298 (-)
AMCG00016108 LOC107730863,LOC107704782,LOC103363427,LOC101479746,LOC102203644 coding downstream 561934 7529911 ~ 7574480 (-)
AMCG00016105 NA coding downstream 610160 7520166 ~ 7526254 (-)
AMCG00016106 NA coding downstream 628319 7473851 ~ 7508095 (-)
AMCG00016118 NA coding upstream 64 8138734 ~ 8139063 (-)
AMCG00016125 NA coding upstream 217009 8355679 ~ 8357486 (-)
AMCG00016127 NA coding upstream 277580 8416250 ~ 8433185 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding upstream 296450 8435120 ~ 8494583 (-)
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding upstream 455420 8594090 ~ 8644348 (-)
G11300 NA non-coding downstream 11031 8124990 ~ 8125383 (-)
G11288 NA non-coding downstream 41210 8093800 ~ 8095204 (-)
G11247 NA non-coding downstream 169109 7967071 ~ 7967305 (-)
G11243 NA non-coding downstream 263645 7872417 ~ 7872769 (-)
G11216 NA non-coding downstream 515561 7620640 ~ 7620853 (-)
G11314 NA non-coding upstream 35019 8173689 ~ 8173974 (-)
G11345 NA non-coding upstream 182027 8320697 ~ 8321042 (-)
G11346 NA non-coding upstream 187512 8326182 ~ 8331803 (-)
G11482 NA non-coding upstream 917234 9055904 ~ 9059100 (-)
G11571 NA non-coding upstream 1175330 9314000 ~ 9314447 (-)
AMCG00016119 NA other downstream 12381 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 382977 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 3206514 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 4215911 3886298 ~ 3920503 (-)
AMCG00016046 NA other downstream 4593878 3528842 ~ 3542536 (-)
G11326 NA other upstream 52876 8191546 ~ 8194432 (-)
AMCG00016134 NA other upstream 684875 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 2695742 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 3627482 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 3693758 11832428 ~ 11947322 (-)

Expression


Co-expression Network