AMCG00016131 (nbeaa)


Basic Information

Item Value
gene id AMCG00016131
gene name nbeaa
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 8657202 ~ 8671178 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016131
ATGATGTCTTTCctgttgtgttgtggtCTGGTGGGCGGGGAGTTCGACCTGGAGATGAACTTCATCATCCAGGACGCAGAGAGCATCGCCTGCATGGTGGAGCTGCTGGAGCACTGTGACGTGACGTGCCAGGCGGAGATCTGGAGCATGTTCACCGCAATCCTGAGGAAGAGCGTGCGCAACCTGCAGACCAGCACTGAGGTGGGCCTGATCGAGCAGATAAATGCCGTGCAATTTGAAGGGCTAGATTTGCAGGGAAACTCAAAAAGCTGTATTCTGGATTTGGATCGCTTACCTCAAGGCCAGTCTGACTCCCCCAGCAGCCCTCTCAATCTCCTGGTGGATATGCTGGGAGTTCTCGCCAGCTACAGCATTACTGTCAAAGAGCTGAAGCTGCTGTTCAGCATGCTGCGTGGAGAGAGCGCGGTCTGGCCCAGGCACGCTGTCAAGCTGCTGTCGGTATTGAATCAGATGCCACAGAGACACGGCCCCGACACCTTTTTCAACTTTCCTGGACGCAGTGCTGCAGCCATTGCGTTACCTCCTATTGCTAAGTGGCCTTACCAAAATGGTTTTACTCTCAACACCTGGTTCCGAATGGATCCTCTGAATAATATCAACGTAGACAAGGATAAACCATATCTTTATTGCTTTCGCACTAGCAAAGGGATCGGGTACTCAGCACATTTTGTTGGCAACTGTTTGATAGTGACTTCACTGAAGTCAAAAGGCAAAGGTTTCCAGCACTGCGTGAAATACGATTTTCAGCCACGAAAGTGGTACATGATCAGTATCGTTCACATCTACAACCGCTGGAGAAACAGTGAGATCCGGTGTTATGTAAACGGTCAGCTGGTATCCTACGGTGACATGGCCTGGCATGTGAACACCAACGATAGTTACGATAAATGCTTTCTGGGGTCTTCGGAGACGGCTGACGCTAACAGAGTGTTTTGTGGACAGCTAGGAGCCGTCTATGTGTTCAGCGAGGCACTCAATCCAGCACAGATATTTGCAATACATCAGCTGGGACCTGGCTACAAG

Function

symbol description
nbeaa Predicted to enable protein kinase binding activity. Acts upstream of or within dendrite development and synapse assembly. Predicted to be active in cytosol and membrane. Is expressed in nervous system; neural tube; and optic vesicle. Orthologous to human NBEA (neurobeachin).

NR:

description
neurobeachin isoform X9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016131 True 1044 mRNA 0.51 9 8657202 8671178

Neighbor

gene id symbol gene type direction distance location
AMCG00016130 nbeaa,nbea,LOC107691681,LOC107588988 coding downstream 12854 8594090 ~ 8644348 (-)
AMCG00016129 LOC106612894,LOC102298628,LOC102206684,LOC101482631 coding downstream 162619 8435120 ~ 8494583 (-)
AMCG00016127 NA coding downstream 224017 8416250 ~ 8433185 (-)
AMCG00016125 NA coding downstream 299716 8355679 ~ 8357486 (-)
AMCG00016118 NA coding downstream 518139 8138734 ~ 8139063 (-)
AMCG00016133 rfc3,LOC107589808,LOC107728889,LOC107577751 coding upstream 139669 8810847 ~ 8820708 (-)
AMCG00016137 NA coding upstream 309902 8981080 ~ 8990420 (-)
AMCG00016138 pds5b,LOC107683122,LOC107730842,LOC107587120 coding upstream 330924 9002102 ~ 9027841 (-)
AMCG00016139 NA coding upstream 379882 9051060 ~ 9055579 (-)
AMCG00016141 NA coding upstream 417991 9089169 ~ 9110807 (-)
G11346 NA non-coding downstream 325399 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 336160 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 483228 8173689 ~ 8173974 (-)
G11309 NA non-coding downstream 518532 8136414 ~ 8138670 (-)
G11300 NA non-coding downstream 531819 8124990 ~ 8125383 (-)
G11482 NA non-coding upstream 384726 9055904 ~ 9059100 (-)
G11571 NA non-coding upstream 642822 9314000 ~ 9314447 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding upstream 764624 9435802 ~ 9498753 (-)
G11650 NA non-coding upstream 872330 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 918557 9589735 ~ 9594953 (-)
G11326 NA other downstream 462770 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 533169 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 903765 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 3727302 4903856 ~ 4929900 (-)
AMCG00016049 NA other downstream 4736699 3886298 ~ 3920503 (-)
AMCG00016134 NA other upstream 152367 8823545 ~ 8827760 (-)
AMCG00016176 NA other upstream 2163234 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 3094974 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 3161250 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 3651983 12323161 ~ 12329033 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location