AMCG00016141


Basic Information

Item Value
gene id AMCG00016141
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 9089169 ~ 9110807 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00016141
ATGTCCAGCTTGTCTGTTTCCACTCTGGACTCCGCCTCATCGAAAAATATGTCCAGTTCTTTTAAAGTAGCCGAGGATTTTCCTCAGCTGGGTTTTAAGACGGCTAGCAATAAAAGCATTTTGGTGCCTTGTGGAGCAATTGAGAAGGCAAAAACTTTGCTAGATGAAGCAGCTGACAGTACCGATATGATTTCCACTCCCAATGTGAAACAAAAGGTTTCCCGGCATTCACCAAACCAGACCCTCCAGAAGGACCATATGTCTGCCAACAAGAATTTCAAAGATTCTCCTGTGACTAATGTTgccaaagaaacatttaaaaagaaccaGGGGAAAGCTCAAATCCCCTGCAAACATTCAGAGACTACCAAGAGTGTAATAAAACATGGCCATGAATCTCTAATCCAAGATGGAGCTCTTCAGGGAATACACATTTCTTCTTATCACAGTGGGGATTCTTCAAATCTCAGTTCCTCAGGTTTTAAAACTGCTTCTAACAACGCAATACAGGTGTCTTCAGCCAACCTTGAGAAAGCCAGGTGTTTGTTTAAGGAAATGGAACATGACAAGCCGCTAGAAGAATGTTTACCTGAGGGCTGTGTTGAAGCAAAAGCTCCAGTTGAAGGAAAGCAGAAGGAGGCCACTACAGGACCCCTTCCAAAGGCATCACATCATTGTCAGTCGTCATTTAAACCAAAGCAACCAGACAGCTATGGCTCTTTGACCGCAAGTCAAAAGGCAGATGTCACAGAACTATGCAATTTCTTGGAAGAAGCTGACAGTCAGTTCGAGTTCACTCAGTTCCAGCGAGCAGCAGCGACTTCGCACGAGCTCACGCCAGGTCCCTCTTGTGATTCACACTGTCGAGAAGCAGACTCTGCCTATTCCCCAGCAGCTATGTCCGATTTCTTAAGTGGCATTGATTTTGATGACAGTTTCAATGCTGACTGTGATAAACAAGCACCTAGAAAGCCATTAACAGGAAAGGTGGTGTCTGACAAGGATCCACACCAAGGTACATGTGGCAAGGAATCAAACTTAAAAATTAACTCCTTTGAGATGTCAAAATGTGAATTAGTTTTCAAGACTAACAGCGGTAAGGAGAAATCTGGGCCTTTGCTTCAGGAAACTGCAGTTTCAGACTCTTCCTCTGGCTGTCATTCAGATATGGTGCCCTTTCATGGCTTTTTGTCTGCTAGTGGCATGAAGATAAAAATATCTAGAGAGAGTCTCAAAAAGGCATCAAGTTTTTTTGATGATTTAGATCTGGGTTGTGTGCCTTTGCAAAACCTTTCCCCTCATTCCAGCCCTCAAGTTCCAGATTTTAATTTGCAGAGTAAGCCTGTCATCAAAATACCAGATGGTAGTCACCAAACAGAAGTGAAAACAAGTTATCCATTGGAATTCCACACTACAGATAAGACTGTGTACCAGTCTGCAAGTAGTCAGAAGATCTACCTTTCAAGAGAAGCAGTATGCAATGTGAATGGCTTTTCTGAAAGTAAGAAGGAAAACTGTCTTCACCTTGAAGAAAATACTTTACTTGATACATGTCATTCAGTAGCTGAACCAGAACATTTCTCACCGCATATTCAGCATCCCCCTGTTAGTGCAGATTCTGAATATTTGGAGACAAAACTGCAGACatgtaacacacagacacaaaatgaAATCGGTCACTGTCAGACTGCAAGTGGGAAGGAAGTTAAGATCCTAGAACCACTGGTGGAAAAACCAGGAGCTTTGCTTTCCAGGGTGGACATGTTGCCTGAAGATAACCACAGACATCAAAGGATGAAAAACAAGGTAGATGCAGCTAATGACCCTTTACATATTGCTGCTTGCAACCTCAACAGTTTCAAGACTGGAAGTATGAATGAAGAACCTGAAGTCCGTAGTGTCGGAGCCACACGGAAAATGGCTGACCCAAAAATGGATTTTCAGACTGTGGCGTATAAACAGGGAAATGCATGGAACTCAGAAATAATCTCAGCCCATCCTTGTGGATTTCAGACTGCTGGAGGAAAGAAGGTCTTGGTGAGCAAAGCTGCTTTAAAAAGAGCCCAAGATATTTTCAAAGAGGATGACTTTGGTGTGGAGATGAGCGGATTGAAGAAATCTGATGGCTCTCATGTTCATAAGGGGGATGGCTTTGAAACGCACAAAGAAGGCTCAATGACAAAGCGTGTCTTGTATAATGAAAATCCTGACATTGCAGATCAGAAAGAACCCAGTGAATGTCATGGAGGCATCAAAAGCCCATGTAAAGTACTCTCTGTCAATCTGCCAAAGAGAACATCCATGGATTCTCAGGCTTCCACAAACTCCGATTCCAACAAAAACCTAGGATCCTCCTGTGGTTACTCAGCTGCTAAGGTAGCCGGAGCCTTGGCAACTCCAAGCTCTAGCCATCCTGTCCTTGCCACTAAGGAGATGTCTGCTCCCATAATGAGAAATACAAGAGAAAGATATGAAATGCAATTGGATGTGAAGGAAGCTGTCCCTGAATTAAACCAAAGAGATTTGATTTCCTACAGTGAGCACAGACATGAAGACAATCAAGCAAATTGTGTCGCTAATATTCAGCCCAATGTGGGTTTCGTGACCGCCCGAGGAACAGCTGTGAACATTTCAGAtaagtttttaaataaagccaGGAACATGTTTGCTGACTTAGAAGACAATCAGGGAAGTAAAAGTGTGAGAGAAGATCCTGTAAACATTAGCAAGCAGCACAATGACGTTTTGGCTAGGTCCAGAAGTAATAGAAACCTAGAGAGGTTAGGGGACACATCAGCTAACCAAATGGATGCTATGGCAGATGCCAGCAAATTCAGTGGTGACTGCAGTACATCTAGTGAGCTAGCTACTGTTTCTGAGAAGGCACTTGAAGAAATTCAGACTGCCCAGAAAGAATGTGTTGAAATGCATACCATATTTATAGAGGAAAgctcaaaacaaattaatgttctAGCTCAAAATCTGAATAACATCAGCAATGCAGGACTTAATACAGCCAGCAGACACAAACTTTGCATTTCTGAGAAAGCTGTTCTGGAAGCTAATTCTGCACCTAATGAATTTGACAATATTGCAAGTAATGGAACTACAAGGGCTTTTAAAGCAGGAATTGGATGTACTACTGACATCACTCCAGGAAAAGGTAGTGGATTTAGTACTGCTAGTGGCAAGAGGGTTTCAGTGTCTGAAAAGGCCCTTCAGGAAGCCAAGATGTTGCTGAAAGACCTTGGTGACACTGAAACTCCAGAACCTAAACAATCTCTGAAAGtggaaaatacaaacattagTACTCCAAATCTCCAGGGGAAATGTGGCCACGGATTCAGTACTGCCAGTGGTAAGAGGGTCTCAGTGTCTGAAAAAGCCCTCGATGAAGCCAAGATGTTGCTGAAAGAACATGACAACGTTGAAACAACAGTTTGTGAAGCTGTTTCAAGGAGTCAGACTCGGAATCCTCATCAAAAGAAAGGGGGCTGTGGCTTCAGTACAGCCAGTGGTAAGAAGGTGTGCATTTCAGAAAAGGCCCTTCTGAAAGCAAGAGCTATGCTAAGCGAAGGCAGTGATATTCCTGGTGTTGAAATCAGTGCCGAAATAAAGGTAGAGTCTTTGAATGTGAAAAGCAACGTTTTCCCAAATATTCTAGGAAAAGGCAGAGTTGCCTTTAGCACAGCCAGTGGCAAAACAGTTTCCATTCCTGAGAAAGCCCTGCAGGAAGCCAAAGCTTTGCTTAACCAATGCGGTGAAGCTGAAACGACTTGCACCCATGGCAGCCATGGATCTCTTAGTGCAGAAAAGATGGATACACATGGAAAACTCAAGGAGGAACTGAATGCAATACATGCAGAAGCCCATGAGAGCAGAAGGACTCCTGGACTAATGAGCAGTCTCGGGGCAACTGCACAGAAGCATGCCATTGCATCCAAGGAGTGGGAAAAGAAGACTTCAGATAGCAGCACTGGTGTTGTCGAGCTTAATTTGCAAGATGGCTCGTCATTCCTGAACCTGCGCTCTCACGGCCTCGGCAGCTGCACAGACACTCAGCAGAGGTACCTGGAGCAGGAGGCTATGGCATGTACCAAAGCCTTATTGGAAGATGATCAAATTGAAGAGTGCTCCTTGGGGTCTCAAAGAGGCCCTCCACAGACTATGAACAACGCAACTTGTGCCATGAAACTACAGGACACTCTGGAAAAGAGCCACAGGATTGGAAAAAGATTGCGATCTGAAGATGCAGACGTAAATGAGGAACCTCCACTTAAAAGGCAGCTCTTGGCAGAATTTGACAGGACCCTGGATCATGTAACATCTATGCCCAAGGCTTTTATAAGCAGTCCAAAGGgtATACTAACAGACcgaagaacatttatttataatgcaccCCTTGTTCCTAACATCACTCATCCCATTggTGATAAAAAGAAGATCAAGGTTGCTGAACCACAGAGCACTTCTTCAGTCACGTCCTTCCAAGAATCCCAGCTGACAAGCACCAGACCTGCAGTGTTTGTGCCCCCCTTTCGCAAGCAGTGCAGCCCTGACCTGCAGAAGAGACCCCCTTTTCAGGAGATTAAAAGACCTTCCGGTGTCTTTGTTCCTCCTTTCAAAAAAGCCCCCGGCTCCTTCAAAGAACCTGAGCACACTAAAGAGAAAAGTGTCCACCCAGAGAGGCAGGGACAAACCAGGGCAAGAGAGAAATGTGGCCCCTTGCCCGAGCCTCCAGCAGGACCCAGTACCTCTGTGTCTTCTTACAAAGAACAGGCTGCTGTGTCAGATGCTGGACTTCAAATCAATACGGCTGCAGGTCTGCCGCAGCATGTCGGGTCCCCATTACCCACCACAGGATGCCGCAGCAATGAGCAGGAGTGCATGGTTTGGAAGACACTCGAGAAGAAGATTGTGCGTATGGGAATGCCCGAGATCCTCCAATCTAACCAGGCACCAGCTTCCAAAGACAAGTGGGATCCTGATAACTTGGATGCAGAGGACATGATTGAAAATCTCCACTTGGCCCGAGACATGCAAGAAATGAGGATCCAAAAGAAGAAGCGACAACACATCAGGCCGCAGCCGGGGAGCCTGTTTTTGGCCAAGACCTCGGGGGTACCCAGGCTGTCTCTCGTGGCGGCGGTGGGAGGAAAGAGCCCGGAGCGACACACACAAGAGCAGTTATATAAATATGGTGTCAACAGGTGTGTGAGCCAGATAGGCAGTGAAAATGCCGAGTCGTTCAGGTTCAACTGCAGAGAGCACTTCCAAAGGGAGCTCCTCTCAGCTGGCAGTGGAGTACAGCTTGCTGACGGAGGGTGCCTAGTACCGGACAACAGAGGCACTGCCGGAAAAGAGGAGGCCTTGTGCGACACTCCCGCCGTGGACCCGAAGCTCATCAGTGAGAGCTGGGTTCACAATCACTACCGGTGGATCGTGTGGAAGAGGGCTGCCATGGAGAGGGCCTTTCCTCAGGAGATGGGCCGTCTGTGTCTGACTCCTGAACAGGTTCTGCTCCAGCTAAAGTATGATGTAGAGGTGGACGGGAGCCAAAGGTCAGCGGTAAAAAAGATAACGGAGAAGGACGACACCCCTGCGAAAACTCTGGTGCTCTGTGTCTGCCGGATAATCTCATCCGGTTCGTCCCAGTCGCGTGGCACCACCGAGAACAAGCCCTCGCTCTCTGCAGACACCAGGATGGACGGGCTGGTGGGTGTTGTTGAAGTCACAGATGGGTGGTACTCCATCAAGGCTCTGCTGGATGCCCCGCTCACCGCCATGCTGCGCAAAGGGAGGCTGGTAGTTGGCAGCAAAATTGTGACTCACGGGGCTGAGCTCATCGGCTCCCAGGATGCCTGCTCACCCCTGGAAGTACCGGAGTCTCTCATGCTCAAGATTTCAGGCAATAGCACTAGACCAGCCCGCTGGGATGTGAAGCTGGGCTTTCACCGCGACCCTCGACCTTTCCAGCTTCCCTTGTCCTCTCTCTACTGTGACGGGGGCACAGTGGGTTGTGTTGATGTCATTGTGCTTAGAAGCTACCCAACACAGTGGATGGAAAAAAAGTCCAATGGGGTTTTTGTGTTCCGTAACGATCGtgctgaggagagagaggatcGAAAGCACGCTGACCATCATCAGAAAACCATGGAAGTCCTGTTTGCAAAGATTCAAGCAGAGTTTGAGAAGAACCAAGAAGTggagaataagaataagaatcgAAGGCAGAGGTTCAGTCGTCAACAAGTCCAGGCACTGCAGGACGGTGAGGAGCTCCATGAAGCCGTTGAAAGCGATCCAGTCTACCTCGAGGCGTGTTTAAGTGAGCAGCAGCTGGCGACTTTAAACAACTACCGAAGGACGCTGAATGAGCAGAAGCAGGCGAGGCTACAGGAGGAGTTTCGCAAAGCGGTTAATTCAGCCCAAGAGGATGAAAGCAGCTGCTCCAAGAGGGACGTGTCTCCTGTGTGGAAGTTATATGTTGCGGACTGTAGGAATTCACAGAGTAACACGGCTCACCTGTTAAACATCTGGCGCCCGAGCATGGACGTGCGTTCCTTGCTGAAGGAAGGCTGCAGATACAGGATCTACCAGCTAGGAGCCTCGGAGGCCAAGAAACACTCCGGCAATGCCTCCCTGCAGCTCACAGCCACCAAGAGGACACAGTTTGAGCAGCTACAGGTGTCTCCAGAAGTGCTGAGTCAGCTCTACCATCCCAGGGAGGCCGTGCATTTCAGAAAACTGCTAAATCCATCATTCCAGCCAGTCTGCAGGGAGGTGGATTTGGTGGGCTATGTTCTCTCTATTGTAGGAAAACAAGCTGTGAAGAGCTGGACTGGTCTGAGCCAGATGGCAGTGGAGGACATTGTGAAGCCATTCTCCCTCCTGGCAGTGAGCAACCTGCAGCTGAGACCCAGCCCACCGGCAGCCATCCCCACAGTGCATGCTGGGGAGCTGGCCGTCTTCTCTGCGAACCCTAAAGAACTACATCTGCAAGAGGCTTTCAAGTTACTGAAGAACACAGGCTTTGAGGATTTCTTTAAGGTTGCTGAAGAGAAGCTCTCCCACTTAATACAGGCAGACCCTGTGAGATCCTTGCAGTCCCCCAAAACACTGAATTCAGACGCTCGACTAGAGAGCAAGAATCCTACACTTGAACAAACTCCAAAGCAGTCGGGACACTTTACCCCAATATGTGGGAAACGGACACTGCCTGCTGGCCAGTCGGATGACAAGGACCCTAAAAGCTTGAAGAGGAAGAGAGGTCTAGACTACCTATCGCGTATCCCGTCTCCGCCTCCGCTGACCCCCATACGAAGCTTGGTGTCTCCCTGTGTGAAGAAGACCTTCCAGCCCCCAAGGAGGTGTGAAATGCCCCGGACTCCGaggggagaaggggagggagaaCACAGCAGGGCTGCCCTGGCTTCCTCAGTCCACCTCGCTGAAGATGAATGGGTGAATGATGAGGAGCTGGCCATGATCAATACCCAGGCCCTCCTGGCCTCCTCGCCAAGAAAATCTGGGGTTTCTGCCTCTGAACAAATCAGGGAAGAGAAGAGCACAGAGATGGGTGAGGAAAATGAGGCCGGAGAAGCATTGCCCTGCAGGAAGAAGCTGCAAATGCCTAACGCTGATGTGACCATATCCCCATCAGAGCAGGAAGATGGGGACTTAATAGAACCTTGCCTGAAAAAGCTGAAATCCTCCGAAGAAATTCCAGAGCAGAAGGAACAAGATGCTCTGTGTGAGTCGCAGTCACTGGCGCAGGATCAGACATTGGCATTCCTGCCGCCAGCTGAGGAGATCCATCTGAATAAGGGTGATGCAGTAAGATCAGCACACAGCCAGGGAGATGAAGGGCCAGAGGAAGCTGGGAATGGAATTCCAGGTCAGGTCACCACAGGTATTGGGACTGTTGAGGAAGCAGATAGGAAATCGCCCAAACCTGAAAACCAAGAGAGAAATGGTACCCATGCTGGCACAGGAGACGCAGTGTCTGTTAAAAATGGAAGTGCAAACACTGCACAGCCCGGCAGTGAAACCACTCCCGTCAGTCAGAGAGACGGCCCCTCGGGTTCGTGGGGCACCAGCAGCACTGCCTTCATCGGCCCCAAGTGCAAGAGTGAATGTCGACGGCGGAAGAAGGACATTGAAAACAAGCTGAGTGAGTTCTacaaggagctggagcagatcGGGGACTCAGGTGTCGAGGGAGGGGGCCAGCACACCACCGGTCCCAGCTCTAGAGCAGGACGGAATGACAAGAGATCCTGGGACAACCCAAGACAGCAATCCAGGTTAGAAGGAAAGTCTAACGCTCCCAGAGGTAACCGCTCGAGTGCAGACGGTGGGCCTCGTCCATATCGTGACCGCTGGCAGAACAGGAGGCGTAGACCTAACTTCCATGGACCTGGGGATGATCACTGCTGGGAAGGGCCAGAGCCACCCTACCATTATTCTCAGTGGGAGCAGCCTCAGGCTTTCAATGCTCCTCATGGGCCTCCTTACCCAAGATTCCAGGGGCCTTATGATGGGCCTCCTAACTTCCCACCTTTTTACCCTCCCGATGGTAGGCCACATATGAACTCTTACTATGAGTACCCTGGAGACGACCAATCGTACCGATGGGAGGGTTCACAGTTTCCTCCAGGCCCTGGCTATGGAGATTATGACTTTCAGAATGACTGGTACAATGGAGCTCAAGGCTTTGGAGACGGAGCATATCCACCTCAGGGTTATGACGACCAGCTGAGTAGCAttattcTCTTATTCTGTGAAAACCACAGGGCCACATTTCAAAACCTGCCCTTTGCCCAAAAAGTAGAAGATGCTGACGCA

Function

GO: NA

KEGG:

id description
K08775 BRCA2, FANCD1; breast cancer 2 susceptibility protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00016141 True 8847 mRNA 0.49 19 9089169 9110807

Neighbor

gene id symbol gene type direction distance location
AMCG00016139 NA coding downstream 33590 9051060 ~ 9055579 (-)
AMCG00016138 pds5b,LOC107683122,LOC107730842,LOC107587120 coding downstream 61328 9002102 ~ 9027841 (-)
AMCG00016137 NA coding downstream 98749 8981080 ~ 8990420 (-)
AMCG00016133 rfc3,LOC107589808,LOC107728889,LOC107577751 coding downstream 268461 8810847 ~ 8820708 (-)
AMCG00016131 nbeaa coding downstream 417991 8657202 ~ 8671178 (-)
AMCG00016142 NA coding upstream 470 9111277 ~ 9116154 (-)
AMCG00016144 NA coding upstream 8761 9119568 ~ 9183910 (-)
AMCG00016148 rxfp2,LOC106591039 coding upstream 156394 9267201 ~ 9289324 (-)
AMCG00016151 NA coding upstream 222886 9333693 ~ 9358730 (-)
AMCG00016152 NA coding upstream 295495 9406302 ~ 9410567 (-)
G11482 NA non-coding downstream 30069 9055904 ~ 9059100 (-)
G11346 NA non-coding downstream 757366 8326182 ~ 8331803 (-)
G11345 NA non-coding downstream 768127 8320697 ~ 8321042 (-)
G11314 NA non-coding downstream 915195 8173689 ~ 8173974 (-)
G11309 NA non-coding downstream 950499 8136414 ~ 8138670 (-)
G11571 NA non-coding upstream 203193 9314000 ~ 9314447 (-)
G11633 hmgb1,LOC105901051,LOC103353583 non-coding upstream 324995 9435802 ~ 9498753 (-)
G11650 NA non-coding upstream 432701 9543508 ~ 9543743 (-)
G11658 NA non-coding upstream 478928 9589735 ~ 9594953 (-)
G11662 NA non-coding upstream 584966 9695773 ~ 9696054 (-)
AMCG00016134 NA other downstream 261409 8823545 ~ 8827760 (-)
G11326 NA other downstream 894737 8191546 ~ 8194432 (-)
AMCG00016119 NA other downstream 965136 8119221 ~ 8124033 (-)
AMCG00016110 ufm1,LOC107701138 other downstream 1335732 7680911 ~ 7753437 (-)
AMCG00016074 NA other downstream 4159269 4903856 ~ 4929900 (-)
AMCG00016176 NA other upstream 1723605 10834412 ~ 10847811 (-)
AMCG00016194 NA other upstream 2655345 11766152 ~ 11781547 (-)
AMCG00016203 zdhhc20,LOC108438268,LOC106578454,LOC108256609 other upstream 2721621 11832428 ~ 11947322 (-)
AMCG00016211 NA other upstream 3212354 12323161 ~ 12329033 (-)
AMCG00016226 NA other upstream 3739071 12849878 ~ 12870560 (-)

Expression


Co-expression Network