G19998 (eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423)


Basic Information

Item Value
gene id G19998
gene name eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54117264 ~ 54154094 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU24816
gttacagtaacagtagtagcagcagtagtagttactgtaacagtagtagcagcagtagcagttacagtaacagtagtagcagcagtagtagttactgtaacagtagtagcagcagtagcagttACAGTAACAGTAGTAGGAGGAGcactggcagcagcagcagcagcagtgacagCCCCAGACTCACCCCCGATGATGGTGCGGATGAGCGAGGCGTGCCCCGGGCAGTCCACCAGGGTGACCTGCAGGCTGTCGAAGCCCCGGTCCTGGCAGGGCCCCCGCAGGTGCTCCGGCAGCGGCACGGAGAAGGACGAGAAGCCCAGGTCCAGCGTGATGCCCCGCTCCCGGGACTGCGGGTTCTTGTCGAAGGCGGCCGTGGAGGCGGTGCTGCTCAGCGCCCGGGCCAGGGAGGTCTTGCCGCTGTCCACATGGCCCAGCACGCCCACGTTGAAGTTCAGGGTCCGGCCGCTGTCCCCCGGGGCGGACATGCTCTCTGGAGCGGCTGGGCGGACTCTGTCCTGCCTGAGTTACAGCGCAGCACAGCTGGGCGATTCAGGCAGCAGGTGtagttgtgttgttgtggtggtggtggtggtggtgt

Function

symbol description
eefsec Predicted to enable translation elongation factor activity. Predicted to be involved in selenocysteine incorporation. Predicted to act upstream of or within translation. Orthologous to human EEFSEC (eukaryotic elongation factor, selenocysteine-tRNA specific).

NR:

description
PREDICTED: selenocysteine-specific elongation factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU24816 True 601 TUCP 0.62 2 54117264 54154094

Neighbor

gene id symbol gene type direction distance location
AMCG00017344 NA coding downstream 980 54107703 ~ 54116284 (-)
AMCG00017345 NA coding downstream 20141 54095864 ~ 54097123 (-)
AMCG00017341 NA coding downstream 25667 54064369 ~ 54091597 (-)
AMCG00017337 NA coding downstream 54879 54058029 ~ 54062385 (-)
AMCG00017339 NA coding downstream 108344 53996105 ~ 54008920 (-)
AMCG00017346 LOC106583208,LOC106565550 coding upstream 109996 54264090 ~ 54276339 (-)
AMCG00017352 LOC100305111 coding upstream 162999 54317093 ~ 54323453 (-)
AMCG00017353 NA coding upstream 189307 54343401 ~ 54352579 (-)
AMCG00017360 prkar2aa,LOC103384990,LOC107669629,LOC107717523,LOC107556498,LOC105906428 coding upstream 401263 54555357 ~ 54558595 (-)
AMCG00017362 prkar2aa,LOC108265715,LOC107679546,LOC107591783,LOC107711958,LOC105906428 coding upstream 416177 54570271 ~ 54570558 (-)
G19992 NA non-coding downstream 59337 54056885 ~ 54057927 (-)
G19957 NA non-coding downstream 62165 54054836 ~ 54055099 (-)
G19923 NA non-coding downstream 76231 53904295 ~ 54041033 (-)
G19918 NA non-coding downstream 202388 53894336 ~ 53914876 (-)
G19920 NA non-coding downstream 219812 53896824 ~ 53897452 (-)
G20066 NA non-coding upstream 215658 54369752 ~ 54370666 (-)
G20078 NA non-coding upstream 298527 54452621 ~ 54454276 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 340841 54494935 ~ 54498038 (-)
G20118 NA non-coding upstream 356142 54510236 ~ 54510488 (-)
G20122 NA non-coding upstream 425171 54579265 ~ 54579718 (-)
G19950 NA other downstream 83103 54032639 ~ 54034161 (-)
AMCG00017334 NA other downstream 159791 53953294 ~ 53957473 (-)
G19824 NA other downstream 352888 53762998 ~ 53764376 (-)
G19808 NA other downstream 388381 53676083 ~ 53728883 (-)
AMCG00017313 NA other downstream 586133 53452118 ~ 53531131 (-)
G20064 NA other upstream 212690 54366784 ~ 54368016 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 373690 54527784 ~ 54535543 (-)
AMCG00017366 LOC105899076 other upstream 484329 54638423 ~ 54651864 (-)
G20193 pfkfb4,LOC104938990,LOC103365889,LOC106565814,LOC107718206,LOC108435436,LOC108254777 other upstream 546476 54700570 ~ 54723791 (-)
G20237 NA other upstream 683003 54837097 ~ 54838491 (-)

Expression


Co-expression Network