AMCG00017339


Basic Information

Item Value
gene id AMCG00017339
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53996105 ~ 54008920 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017339
ATGAGATCGGAtagagagagcagcagagagCTGGAACCTGAATCTGTCAGAGCCGCAGCTGTGCCCAGCGCTGGCCTGAGGGAGGctgccgggccgggccgggccgggccagGACCTGAGAGAGACTGCGGCTGGCAGACCACCGCTCTgctccGAGGACAGTCTCGGACTGAGCATGTTGCCTGTCGGCCCGTATCGCCTCATACAGGACTGCGCACCGGACTGGGGAGACGGGCCGGGCCAGCACTGAGGGGTCTCAGCCCGGCTCAGGTGAGGAGGTCACGCGGTGATGGATGCGCTCTGCAGGTGAATATGCACGAGTGGGTGTGGACCTGGAGAGGGATCCTGGTAGTGGTGCCTGGAGAGCGCAgtacggcacggcacggcacggcacacACTCTGTCCCTCCTGTTTCCCCCAACCCCACAGACGGGGTGTAGAGACCCCCAAACCTGCATGACCACTATTCGCTCGGCGCTTGGGCCCTGGCAGGCTCTGGGGCTTGCCCttgGGAGGGTCTCCTGTATCGGGTGTGTCCTGCTCACAGCCACCCTTCACAAAGACACACCATTTACATTGCTGGAGGGGTTGCCTCGAGCCGGCAACTACAGAGGCGTGCCCGGGCGCCACCTGGCGGCCCGGCTGCGTAAACGCACGCAGTCCAACGTCATCACGTCGCCAAGCGTGCGGGCGCATGCTCTGTCACTGGTGACGTGGTTTGTGTTCGCAAGAGCCGCGGAGGACGAGGAAGTGCCGTTCAGAGCGAAGGGAGCCGTTTCAGTGCCTGCGAGCCGCGGTTTGGCACAGGCGCTAGGCTGCTGTCAGGGCCGCATCATGGGCTCAGAGGACGCGCTGCACAGCGCCACCACGCTGGCGTCCTACAACGTCCTGCTGCAGGAGCTGCTGGGGGTGGTGAACGTCAGgCTGGCCCTGCTGTACTCCACGGTGGTGTTCCTGTCCAGGGAGGCGTTCAGGCGGGCATGTCTGAGTGGCGGCTCCAGGCGCGACTGGAGGCAGGCGGTCAACCTGCTGTGGCTGACGGTGCCGCTGGGGGCCGTGTGGTCGGTGCTGCTTGGGGCCGTGTGGCTGTGGCTCCTGGAGGCCCCGGACCCGGCCGCTGTCCCGCACTACGCCCCCGCCGTGGGGCTCTTCGCGCTGTCCGccctgcaggagctgctggcCGAGCCGCTCTGGGTGCTGGCGCAGACGCACATGCTCATCCGGCTCAAAgtggtGGCGGAGAGCCTGTCTATTGTAGTGAAGTGCGTGTACGACATCGTGAATAACCTGGGCTCCATGGTGGCCCGGTTCGTGTTCCTGCCCATCGAGGAGAGCTTCTACGTGTTCTTCTCCCGCGTGCTGCAGCGGGGCGGGGGGGCGCGCGACCAGAAGCAGGAGGATGCTGCCATGGCGGCGGAGGTTCTGGAGTCGCTGCTGAAGCTAGTGCTCCTGATCGGTCTGATCATCACCGTGTTCGGCCAGGCCTACTCCCACCTGGCCCTGGACCTGTACGGGGGGCCCCTGCTGAGCAGTGGGACAGGCCCTGTGCTGCTGCGCTGGTACTCTGGCTATGTGCTCCTGCTGGCGCTGAATGGAGTCACTGAGTGCTTCGGCAGCGTGGGCTTCATCCTGGCCAACTGCCTGAACATGGGCCTGCGTATCGCCCACAGCCTGCACTACATCCACCGCTATTTCCTGGGCAGCCCCTGGGGGCCCCTGCGCGGTCTGCGTCCCTCCCCCGCCCTGCTGCTCTGCCTGGCCCTCAGCGCTGTCCTGACCAGAGTCTCTGAGGCAGCACTGTGCTGTGACTCGGGCTGGCTGTGGCACCTGGCCCATGTTGCAGTGGGGGCCGTGTGTCTGCTCGCCGTCCTCGTCGCCGTCGTCCTCAGCGAGACGCAGCTCGTGCTCTTCATCCGGACACAGCTGCTGTCCCGCTACGCCAAGAAGGACACCTGACCTGGCAGCGTGGGACTGAGGAGCCGAGCGTCCCGGACCCCGTCCCACTGACGCCACCGCTGGACCACAGCACGGCCCCCCACCAGGGGCTGGCCGTCCCACCGCGCAGCcggacacacacctgcacagagCTGCAACTCCCCACTCGCGCGGCTGGCAGCTCGGTCAGGGACGCTGTTGGATACTTAACCATCTGTATCCattcaaaccaaaccaaaccgaGCTAACGCTGACTCCCGGCGGCGGCCCCTCCAGGCAGCGGCGCTCGTTTCTCGCAGCTCTGGGTCTGTGTAACGCCCCTCTGCTCGCTGCCAGGAGGGAGAGTCAAACATCTTgtgtttctgatattttatgttatgAATCACTGTTTATGGGAGGTTGAGACAGAGACTGGgccttttgttctgtttgtctaATTGTCTCTCCGTATTCGCGAGGTTCTGCACAATAAAGACTGTGGAGAGAACCTGCCGAGTCTGTGGTTCAGTGGAATGGAGGCGATGCAGGACGGGGCCCCCGGGCCGCTGTGTCCCACAGAGACGCGTCTGCGAAGGAACAGAGTGTGAACGGTGACCCGGGCTCTGCAGCCCTGCCGCCTGCTCACACAAAC

Function

GO: NA

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017339 True 2566 mRNA 0.65 14 53996105 54008920

Neighbor

gene id symbol gene type direction distance location
AMCG00017338 NA coding downstream 9396 53974133 ~ 53986709 (-)
AMCG00017332 tmem110,LOC108435844,LOC106582935,LOC107656046,LOC107755187,LOC103359875 coding downstream 23737 53960821 ~ 53972368 (-)
AMCG00017333 impdh2,LOC102785462 coding downstream 105457 53884651 ~ 53890648 (-)
AMCG00017327 NA coding downstream 131561 53857096 ~ 53864544 (-)
AMCG00017328 NA coding downstream 144131 53835650 ~ 53851974 (-)
AMCG00017337 NA coding upstream 49109 54058029 ~ 54062385 (-)
AMCG00017341 NA coding upstream 55449 54064369 ~ 54091597 (-)
AMCG00017345 NA coding upstream 86944 54095864 ~ 54097123 (-)
AMCG00017344 NA coding upstream 98783 54107703 ~ 54116284 (-)
AMCG00017342 ruvbl1,LOC107721190,LOC107667375,LOC107568195 coding upstream 138304 54147224 ~ 54151848 (-)
G19918 NA non-coding downstream 81229 53894336 ~ 53914876 (-)
G19920 NA non-coding downstream 98653 53896824 ~ 53897452 (-)
G19875 NA non-coding downstream 127328 53864910 ~ 53868777 (-)
G19873 NA non-coding downstream 141477 53853983 ~ 53854628 (-)
G19741 NA non-coding downstream 577028 53418185 ~ 53419077 (-)
G19957 NA non-coding upstream 45916 54054836 ~ 54055099 (-)
G19992 NA non-coding upstream 47965 54056885 ~ 54057927 (-)
G20066 NA non-coding upstream 360832 54369752 ~ 54370666 (-)
G20078 NA non-coding upstream 443701 54452621 ~ 54454276 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 486015 54494935 ~ 54498038 (-)
AMCG00017334 NA other downstream 38632 53953294 ~ 53957473 (-)
G19824 NA other downstream 231729 53762998 ~ 53764376 (-)
G19808 NA other downstream 267222 53676083 ~ 53728883 (-)
AMCG00017313 NA other downstream 464974 53452118 ~ 53531131 (-)
G19730 NA other downstream 608396 53383340 ~ 53387709 (-)
G19950 NA other upstream 23719 54032639 ~ 54034161 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other upstream 108344 54117264 ~ 54154094 (-)
AMCG00017343 NA other upstream 118767 54127687 ~ 54145216 (-)
G20064 NA other upstream 357864 54366784 ~ 54368016 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 518864 54527784 ~ 54535543 (-)

Expression


Co-expression Network