RNA id: AMCG00017339


Basic Information

Item Value
RNA id AMCG00017339
length 2566
RNA type mRNA
GC content 0.65
exon number 14
gene id AMCG00017339
representative True

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 53996105 ~ 54008920 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGATCGGAtagagagagcagcagagagCTGGAACCTGAATCTGTCAGAGCCGCAGCTGTGCCCAGCGCTGGCCTGAGGGAGGctgccgggccgggccgggccgggccagGACCTGAGAGAGACTGCGGCTGGCAGACCACCGCTCTgctccGAGGACAGTCTCGGACTGAGCATGTTGCCTGTCGGCCCGTATCGCCTCATACAGGACTGCGCACCGGACTGGGGAGACGGGCCGGGCCAGCACTGAGGGGTCTCAGCCCGGCTCAGGTGAGGAGGTCACGCGGTGATGGATGCGCTCTGCAGGTGAATATGCACGAGTGGGTGTGGACCTGGAGAGGGATCCTGGTAGTGGTGCCTGGAGAGCGCAgtacggcacggcacggcacggcacacACTCTGTCCCTCCTGTTTCCCCCAACCCCACAGACGGGGTGTAGAGACCCCCAAACCTGCATGACCACTATTCGCTCGGCGCTTGGGCCCTGGCAGGCTCTGGGGCTTGCCCttgGGAGGGTCTCCTGTATCGGGTGTGTCCTGCTCACAGCCACCCTTCACAAAGACACACCATTTACATTGCTGGAGGGGTTGCCTCGAGCCGGCAACTACAGAGGCGTGCCCGGGCGCCACCTGGCGGCCCGGCTGCGTAAACGCACGCAGTCCAACGTCATCACGTCGCCAAGCGTGCGGGCGCATGCTCTGTCACTGGTGACGTGGTTTGTGTTCGCAAGAGCCGCGGAGGACGAGGAAGTGCCGTTCAGAGCGAAGGGAGCCGTTTCAGTGCCTGCGAGCCGCGGTTTGGCACAGGCGCTAGGCTGCTGTCAGGGCCGCATCATGGGCTCAGAGGACGCGCTGCACAGCGCCACCACGCTGGCGTCCTACAACGTCCTGCTGCAGGAGCTGCTGGGGGTGGTGAACGTCAGgCTGGCCCTGCTGTACTCCACGGTGGTGTTCCTGTCCAGGGAGGCGTTCAGGCGGGCATGTCTGAGTGGCGGCTCCAGGCGCGACTGGAGGCAGGCGGTCAACCTGCTGTGGCTGACGGTGCCGCTGGGGGCCGTGTGGTCGGTGCTGCTTGGGGCCGTGTGGCTGTGGCTCCTGGAGGCCCCGGACCCGGCCGCTGTCCCGCACTACGCCCCCGCCGTGGGGCTCTTCGCGCTGTCCGccctgcaggagctgctggcCGAGCCGCTCTGGGTGCTGGCGCAGACGCACATGCTCATCCGGCTCAAAgtggtGGCGGAGAGCCTGTCTATTGTAGTGAAGTGCGTGTACGACATCGTGAATAACCTGGGCTCCATGGTGGCCCGGTTCGTGTTCCTGCCCATCGAGGAGAGCTTCTACGTGTTCTTCTCCCGCGTGCTGCAGCGGGGCGGGGGGGCGCGCGACCAGAAGCAGGAGGATGCTGCCATGGCGGCGGAGGTTCTGGAGTCGCTGCTGAAGCTAGTGCTCCTGATCGGTCTGATCATCACCGTGTTCGGCCAGGCCTACTCCCACCTGGCCCTGGACCTGTACGGGGGGCCCCTGCTGAGCAGTGGGACAGGCCCTGTGCTGCTGCGCTGGTACTCTGGCTATGTGCTCCTGCTGGCGCTGAATGGAGTCACTGAGTGCTTCGGCAGCGTGGGCTTCATCCTGGCCAACTGCCTGAACATGGGCCTGCGTATCGCCCACAGCCTGCACTACATCCACCGCTATTTCCTGGGCAGCCCCTGGGGGCCCCTGCGCGGTCTGCGTCCCTCCCCCGCCCTGCTGCTCTGCCTGGCCCTCAGCGCTGTCCTGACCAGAGTCTCTGAGGCAGCACTGTGCTGTGACTCGGGCTGGCTGTGGCACCTGGCCCATGTTGCAGTGGGGGCCGTGTGTCTGCTCGCCGTCCTCGTCGCCGTCGTCCTCAGCGAGACGCAGCTCGTGCTCTTCATCCGGACACAGCTGCTGTCCCGCTACGCCAAGAAGGACACCTGACCTGGCAGCGTGGGACTGAGGAGCCGAGCGTCCCGGACCCCGTCCCACTGACGCCACCGCTGGACCACAGCACGGCCCCCCACCAGGGGCTGGCCGTCCCACCGCGCAGCcggacacacacctgcacagagCTGCAACTCCCCACTCGCGCGGCTGGCAGCTCGGTCAGGGACGCTGTTGGATACTTAACCATCTGTATCCattcaaaccaaaccaaaccgaGCTAACGCTGACTCCCGGCGGCGGCCCCTCCAGGCAGCGGCGCTCGTTTCTCGCAGCTCTGGGTCTGTGTAACGCCCCTCTGCTCGCTGCCAGGAGGGAGAGTCAAACATCTTgtgtttctgatattttatgttatgAATCACTGTTTATGGGAGGTTGAGACAGAGACTGGgccttttgttctgtttgtctaATTGTCTCTCCGTATTCGCGAGGTTCTGCACAATAAAGACTGTGGAGAGAACCTGCCGAGTCTGTGGTTCAGTGGAATGGAGGCGATGCAGGACGGGGCCCCCGGGCCGCTGTGTCCCACAGAGACGCGTCTGCGAAGGAACAGAGTGTGAACGGTGACCCGGGCTCTGCAGCCCTGCCGCCTGCTCACACAAAC

Function

GO: NA

KEGG:

id description
K06316 RFT1; oligosaccharide translocation protein RFT1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU24731 lncRNA downstream 47073 53904295 ~ 53949032 (-) True G19923
TU24721 lncRNA downstream 81229 53894336 ~ 53914876 (-) True G19918
TU24723 lncRNA downstream 98653 53896824 ~ 53897452 (-) True G19920
TU24655 lncRNA downstream 127328 53864910 ~ 53868777 (-) True G19875
TU24653 lncRNA downstream 141477 53853983 ~ 53854628 (-) True G19873
TU24770 lncRNA upstream 45916 54054836 ~ 54055099 (-) True G19957
TU24806 lncRNA upstream 47965 54056885 ~ 54057927 (-) True G19992
TU24926 lncRNA upstream 360832 54369752 ~ 54370666 (-) True G20066
TU24938 lncRNA upstream 443701 54452621 ~ 54454276 (-) True G20078
TU24994 lncRNA upstream 486015 54494935 ~ 54498038 (-) True G20116
AMCG00017338 mRNA downstream 9396 53974133 ~ 53986709 (-) True AMCG00017338
AMCG00017332 mRNA downstream 23737 53960821 ~ 53972368 (-) True AMCG00017332
AMCG00017334 mRNA downstream 38632 53953420 ~ 53957473 (-) True AMCG00017334
AMCG00017333 mRNA downstream 105457 53884651 ~ 53890648 (-) True AMCG00017333
AMCG00017327 mRNA downstream 131561 53857096 ~ 53864544 (-) True AMCG00017327
AMCG00017337 mRNA upstream 49109 54058029 ~ 54062385 (-) True AMCG00017337
AMCG00017341 mRNA upstream 55449 54064369 ~ 54091597 (-) True AMCG00017341
AMCG00017345 mRNA upstream 86944 54095864 ~ 54097123 (-) True AMCG00017345
AMCG00017344 mRNA upstream 98783 54107703 ~ 54116284 (-) True AMCG00017344
AMCG00017343 mRNA upstream 118767 54127687 ~ 54143175 (-) True AMCG00017343
TU24740 other downstream 38765 53953294 ~ 53957340 (-) False AMCG00017334
TU24599 other downstream 231729 53762998 ~ 53764376 (-) True G19824
TU24580 other downstream 267222 53676083 ~ 53728883 (-) True G19808
TU24477 other downstream 608396 53386096 ~ 53387709 (-) False G19730
TU24763 other upstream 23719 54032639 ~ 54034161 (-) True G19950
TU24816 other upstream 108344 54117264 ~ 54154094 (-) True G19998
TU24820 other upstream 133218 54142138 ~ 54145216 (-) False AMCG00017343
TU24923 other upstream 357864 54366784 ~ 54368016 (-) True G20064
TU25029 other upstream 636917 54645837 ~ 54651864 (-) False AMCG00017366

Expression Profile