AMCG00017341


Basic Information

Item Value
gene id AMCG00017341
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030122.1
NCBI id CM030122.1
chromosome length 54868152
location 54064369 ~ 54091597 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00017341
TGGCGCCGCCAaggggggccgggggggccAGGGGGGCCACGGCCATCCTGATACAGTTGCCTGCCCGGGGATCTCGCGAGTCGCATATGCACAATATGCTTCTGAGACTAGCCTATCTGAAGAACAATGAATCGCCTAACATGTacataacacattaaaacaggATTGTTGTGGAACTCAAAATGTGAACTGTACCTGTATTAGTCATTGCACATCAGATAATTAGTAacattaactgtaaaaaaagaaaccaaagtaTATCAGTATGCGATTCCTTAACTCTCATATTGACATCGTTTTCAACTAGCCTCTATACTACAACAGCATGGTTTTGGTGTGCCACCCCAAGATTTTCAGTGGCCCCATCTGGTCACCCCTGTGAATAGTGTCTACTGTGTGCGTTGATATgaacacaacaacagcacacacCAGAGCAAGACTGCGCTGGGACTTCGTATAGTTCTCGACAGTATTGTTCTTAACCGCTCTAAACAACACTCCTGTGAAGCGTGTGAAATATAGCACCCGTGTGCGTGACTGGCGTGCGGTGGCGTTGCGGGAGCTGCGGGCGGGCGGCGCTGGGACCCGGCGGGGAGTCCGTGTGGCGGCGACATCGTCCACGGCGCGGGCTCGCGCTGCGGCTCTTCTTTCCGTTTCTTTAAACCGAACCGGGAATAGCGGCGCGTCCTGCCGGGACACCGGGACTGTGCTTTGGACCCGTGCAGGTCACTGGAAATCAGACTGCATTTCTGGAGCCGCTGAAAAGACCAGAATACCGCCCCCCCAGCGCACACAcacggagggggggggggaagagaaagagaaagagatgtAGTAATCTTCAAGATCAAGTTGCACAGTGACAGAAGACTGGCCGCCTGACAGCCGATACACGCgcgcgcgagagagagagagagagagagaagcagttGCAGTAGCAGTCTGGGTTTCATATGGACACAATATACAGCTGAACTGGAGCtacaattagaaaaataaatcaatcatatgaataaataaatttctGCTCAGGGAGTCATAGCCAACAGTGCCACAGTGAAACACAGAGAGGAGGGAAGACAGGCTGAAAGAGCAGAGAGAGGGGAATAAGAGAAGAAAGGAGGTTGGTCAAGGAGAATAATAAGacggggaggaggagagagaaactgtccggagaggaggagaggagcagAGAGACGAGGGTGGGAGAGCACAGAGACCTGCGCCCAGGATCGAAGGCTGGTGCCTGGGGGGCTGCCTCCATCTGCGCTCCCGGGTGACTGCTCACTGACCCCAGGGACTAAGGGGGACAGGACTGGGGCGCAGACAGCCCGGGCCCCTGGTGCCCACCTGTGCGGTGCGATGGACCGAGAGCTGGAAGCCCCGTGGCGGGTGCTGCTGtggtgcctgtgtctgtgtgtcgcCGGTGAGGTCAGAGGAGCTCAGTGCCTGGAGAGGGTAGAGTGGAGCCAGGACCTGCTCACCTGTGGACAGGGCGTCTCCAACTGCACTTGCACTGTGGAGGATGTGTTTCTGCCTGAGCTGGACCCTGAGGGGCCCCACGTGGTCGTGACGCGGTTGGACGTCGAGCCCCTGCTGTGCTGCCAGGCGGAGGGGGGTCCGGGGCGGCACTGTAGGCTGTGCCTGCGGGTCCGAGTCACCCTGAGCGTGGGAGGTCATCCAGGGGTGGACGATCAGTCGGGCGAGGACGATCTGGATAGCGAGGCGGGGAGTGGCCTGGAGAGCCAGACAGCCTCTGTCCAGGTGTGCATCTTTGTGCCGCACCGATTCATTCCATGCAAGAAGCTGCATGTCAAACTGACCCCCGCAGGCTCGGAAGGCAATGACAGCCGTGAGGTGCACGTGTCTCTGGTGTCGTTCCCCCCAGTACCGCTAGGCAGTGATGTGTGGGTGGTCACCAATGCCGGGCCGAACACCTCCCTCACGACCAACCTGACCCTCCCAGGGTGTCCCAGAGATGGCCAGTGGCCACATATGTTGGACTGTGAAGTTCCCACAGTCTGCACGGGGATTCACCGGGAAACGGGCGAGGCCTTCTTACAATTGGTCGACAAGAATATTAGACCCTCCAACAAGATGGGGGTGTGTCTGAAACAAGGAAGGCATGGAGTGTGCCAATTCCATTCTCTGGATCCCTTTCAGAACCAGACTGAGCTGAGGATTCCCCTATATAGTGTCACCCCCTGCCTGTGCTTCGAGgtgtggTGGATGAGTGAGGCCGATAAAGACTCTGTGCGTCACCTGATTTGTCCCTTTGAGAACAACACAGagcTACAGCAGGCGATGTGGAATAATCTGACCCTGTCCGTGAGCAAGAACCAGACACGGCAGAACCGAACGGCGCTGTTCTGGAGCATCACCACACCCTGCCAGGTGGAGGCTGAACTGTGGCAGTGCCGGGGCCCCACCTCGAGGCCCTCTGACTGCCAGTTGATCAAGGACAGGATGTTCACCGGGTGGCAGCAAGCAGGGAAATCACAAGTCCTGATCCAGAGAACCGGAGAGTTCCCCATCACGGACTCTGACCCCTCTCCGTGTTTGATGgctTCAGTGAAGGGGATAGACAGACCACTGGGCCCAAAGTGTCTCTCTGTCCCAGTCGCTAGGGGGCCCTGGAGTCTGCTGGTCCCGGCCACCCTGCTGCTGCTCACCGTGGCCGTGCTGGGCTCCTGTCTGCTGCAGGGCGCCCTGAAGGGCTGGGTATCGAAGGTGTGCAAGAGGGAAGACATCAGAGgTGCAGTGGGGGGAGGGCAGGTGGTGCTGCTGTACCCCCCCGAGGCAGATGAGGCCCTGGCAGGGCGGGTGTGCTGTCTGGGCTCGGCGCTGGCCGGGCTGGGCTTTTCTGTGTCGTTGGACCTGTGGAGCCGGGCCGAGCTGTGCGCGCTGGGCCCCGTGCCCTGGCTGCACTCCCGGCTGTCCCAGCTGCAGAAGCACGGGGGCAAGGTGGTTCTGATCCTGAGCCGGGCCGCCTGGGAGCGGGCCGAGAGCTGGGCCCAGGGCGGGGCAGCAGGGGGGCGGTCTGGGATGTGGGGAGTtggggagagagacggagacaaGGAGCCGGGGGCGGCCTGCAGCTCTCCGTACACAGACGTCTTCAGCGCCTCGCTCAGCTGCATCTTCGCCGACTACCTGCAGGGCCGCGCCGGCGAGCGCTTCGTGTTAGCGCAGCTTGAACCAGCGCCGCTGCCCCCCATCCCCAGCGGCAGCAGCACCGGCAGCAGCAGCCTCCTGCTTCCGGAGATTTTCCGTGGCCTGCCACTGTACAGTCTGCCCTCCCAGAGCCTGGGCTTCCTCACTGAGATCTCCACACCGCCCCCCCACGGCCCCAGCGGGCGCTGTCGGACCCCCAGCCGGGGGAGACGGGCGGCGGGGCTCAGGGCAGCCTCACGGGCGCTGGCGGGGAGGCTGCGAGGGGTCTGGGGGGCGTCAGAGGCGGGCTACCGGCTGTCCGGCTGCTCCAGGGACAGCTGCGTGAGCGCCGGACTGTCTGAGGAGATGTGGGAGACGGTGCCCCTGCAGCCCGGCGgcaccccaccccacacacacccgccccgactgacacactgggtctgagagggacagagggacagagggatgGGATGCCTCTCAGGCTGATGAACTGGGCCatgagggatggagagaggatTCTCCTCTCAGTGCGCTGGCAACTTCACTCTCAgagctgttttttgtgtgtgggttgTTTTTCGTCTTGCAAAACTTTCCAAAGCGCAGAAGGAACCAGACAGGACTGGACCAAACCAGGCAGGACTGGACTGAACCAAAGCTGGCCGGTCCACCTGCCCCAGTGAGGAGAAACGGCTGCAGTACTGTTGACGTCTACAATGGCagccactgtgtgtgtttatatctgTCACTCATGTCtgtccattttttgttttgtaagaatATTGTGCTCTACATCGTGAGTTTTGAAGGATTCATATAAACAGGGACACGCATGTCTCTATCTAACCCTcactgtccctccctctctctctctctctctctctctctctgcaaacaAAGCACTGACTCACAggtagagagagacacacagagggagagagagagagctgggaaGGGActgagtagagagagagagaggcgggggGGAGCTCCGTGCGCTGTAGGAGCCTCGGTCTATGATCACTAGGGCAGCAGTGAGGCTTAGTGGTGTTAATGTCACAGCGCACTGTCACTCCATCTACCCTTGCAGCTGCTGAAGGGACGCTGGTGtcctttaatttagtttgtttgtttatttatcccTTTTATGGATTGCACGCTTAATAAAGATTTCACCGCCTTAGCTGTGATGGAGGGTTCTCTCTCTTCTGGTCACCTTTTTTAAAGACAGCTGGATTTCTCTCCGTGATACAAAACTTTGTAGTCCTGAATTACATGAAGTCTGTCTTTTCCTTGTTGGGctcgtatttgcatattaaagggttatgaattaaaaacaa

Function

GO: NA

KEGG:

id description
K05166 IL17RC, IL17RL; interleukin 17 receptor C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00017341 True 4493 mRNA 0.58 17 54064369 54091597

Neighbor

gene id symbol gene type direction distance location
AMCG00017337 NA coding downstream 1984 54058029 ~ 54062385 (-)
AMCG00017339 NA coding downstream 55449 53996105 ~ 54008920 (-)
AMCG00017338 NA coding downstream 77660 53974133 ~ 53986709 (-)
AMCG00017332 tmem110,LOC108435844,LOC106582935,LOC107656046,LOC107755187,LOC103359875 coding downstream 92001 53960821 ~ 53972368 (-)
AMCG00017333 impdh2,LOC102785462 coding downstream 173721 53884651 ~ 53890648 (-)
AMCG00017345 NA coding upstream 4267 54095864 ~ 54097123 (-)
AMCG00017344 NA coding upstream 16106 54107703 ~ 54116284 (-)
AMCG00017342 ruvbl1,LOC107721190,LOC107667375,LOC107568195 coding upstream 55627 54147224 ~ 54151848 (-)
AMCG00017346 LOC106583208,LOC106565550 coding upstream 172493 54264090 ~ 54276339 (-)
AMCG00017352 LOC100305111 coding upstream 225496 54317093 ~ 54323453 (-)
G19992 NA non-coding downstream 6442 54056885 ~ 54057927 (-)
G19957 NA non-coding downstream 9270 54054836 ~ 54055099 (-)
G19923 NA non-coding downstream 23336 53904295 ~ 54041033 (-)
G19918 NA non-coding downstream 149493 53894336 ~ 53914876 (-)
G20066 NA non-coding upstream 278155 54369752 ~ 54370666 (-)
G20078 NA non-coding upstream 361024 54452621 ~ 54454276 (-)
G20116 LOC106929785,LOC108235569,LOC103465231,LOC103143233,LOC106950531,LOC105927081,LOC106517999 non-coding upstream 403338 54494935 ~ 54498038 (-)
G20118 NA non-coding upstream 418639 54510236 ~ 54510488 (-)
G20122 NA non-coding upstream 487668 54579265 ~ 54579718 (-)
G19950 NA other downstream 30208 54032639 ~ 54034161 (-)
AMCG00017334 NA other downstream 106896 53953294 ~ 53957473 (-)
G19824 NA other downstream 299993 53762998 ~ 53764376 (-)
G19808 NA other downstream 335486 53676083 ~ 53728883 (-)
AMCG00017313 NA other downstream 533238 53452118 ~ 53531131 (-)
G19998 eefsec,LOC107568193,LOC107667374,LOC107712058,LOC107584423 other upstream 25667 54117264 ~ 54154094 (-)
AMCG00017343 NA other upstream 36090 54127687 ~ 54145216 (-)
G20064 NA other upstream 275187 54366784 ~ 54368016 (-)
AMCG00017358 LOC104930492,LOC103358728,LOC105927190 other upstream 436187 54527784 ~ 54535543 (-)
AMCG00017366 LOC105899076 other upstream 546826 54638423 ~ 54651864 (-)

Expression


Co-expression Network