AMCG00018913


Basic Information

Item Value
gene id AMCG00018913
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030135.1
NCBI id CM030135.1
chromosome length 28454832
location 25466091 ~ 25485446 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00018913
atgtttgtgtctgtgtttatctgtgtgtgtgtgtgtgtgtgtgtgttggtagACCCTGCCCCAGTGCTGGAGGCGTCACACTCCCTGGAGGAACGACTCCAGCAGCTGCAGAGCACTGACCCGGACAACCGCGCCGTTGTCAAGGAGATCGGCAGACACTGGAGGAGACACCTCGAGCACCTCAGCAGCCACGAGGACACAGTGGGAGCCACGGCAGCGCCCTCCCGGAGTCCGGCATCTCAAGACCCCTCTACCATCCCCCCCAACAGAAAAGCACTTGGAACAGAGGGGCGAAGCAATGAAGGCGAAACAGAAAAGTACaatacacacagcacagtgcaggggCGTGGCGCTCTGACAACAACGCAGACTGAACTCCTGGACCTGAGGTGTAAATACGATGAGGAAACAGCCTCCAaAGCGGAGGAAGTTGGGCTGATCATGACAAATCTGGAGAAAGCGAACCAGAGGACGGAAACAGCCCAGCGGGAGGTGGAGAGACTGAGAGAACAGCTGGCAACAGCCAACAGTGCCATCCACCTGGGTTGCCATCCTGCAGAGGGATCCAGTGAGGAAAAGGAGTGCGGGGGCCAAGGGGCCCGTGTAGAAGCAGCCCTAGCGGCCAAAGACCGAGAGATCCTCAGGCTGATCGAGGATGTCCAGAAACTTCAGGCGACCCTGCAGGAACTCCAGGAGAGCTCGGCCAATCAGATCGCAGAAATGGAATGCCAGCTGGCCAACAAGACAGAGGCTATAGAGAGGCTGGAAGCCAAGCTAAAGTCACAGGTGGattatgaagaaattaaaacgGAGCTCAGcatACTGAAAGCAATGAAATTAGGTTCCGCGAATGGCAGCTCATCACGAGATTCATCGAAAGCTGAAGAAGCTCTGCTGTTGGACAAAGACTCCTTTCTACCATCTCAGAAGTACTTAGTGGAAAAATCCATTCTCTTGCATATCAATGATGAGGACCATTCTGAAGAGGAGTCTGTAAAGGAACCTGCCAGACCAACGGTGTCATACTCTTCCCCTCAGAGGGCCTTGCAGCCCCCTGTAGATGGCTGTGCCTCGCCCAGCCCGGGGCAGCCAGTCCCTGGTCCTGTTTCAGCGCATGACCTAGTGCGTCCCTTTTCTGTCTCCCCTTTCCCTGGGGACAAGCTAGCTGGGGATCTCCAGAAACAGCTGCTCTCCCCGCTCTACGGCAAAAAAGACAATGGCAGCCTTATGGCCTTCCCCACCGCCCTCTATGCAGCCAAAGCCGCACTCCTTTCAGCCAATCAGGGCCAAGCCCTGGCGGGGGGAGAAGCCGGTCCCCCCAGTGACCAATCAGAAAGTGGGAGCTCCAACGCCGGGGATGACGAGCAGCTGGACACGGCCGAGATAGCTTATCAGGTGAAGGAGCAGCTGCTGAAGCACAACATTGGGCAGCGTGTGTTCGGCCACTATGTGCTGGGGCTGTCGCAGGGCTCTGTTAGCGAGATCCTGGCCCGGCCCAAGCCCTGGAGGAAGTTGACTGTCAAGGGAAAGGAGCCCTTCATCAAGATGAAGCAGTTCCTCTCGGACGAGCAGAACATCCTGGCTCTCCGAACTATTCAGGTCCGCCAGAGAGGCAGTATAACTCCCAGGATCCGAACCCCAGAAACTGGCTCTGATGACGCCATAAAGAACATCCTGGAGCAGGCCAAGAAGGAAATCCAGTCCCAGAGAGGAAGCGATGGGAAGTTGTCCCTGGGCGGCTCCTTGGCCAGCAGCAGCAACGGGGGcggcagcagtagcagcagcagctcagaCGACACCATCAAGAGCATCCTGGAGCAGGCCCGGCGTGAGATGCAGGCACAGCAGCAGGCCCTGCTGGAGATGGAGGCCTGCGGGCGCGGGGGTGGAGGGGCCAGTGGAGGTGGGGGAGGCGGGATGCAGGGGGAGCGTCCTGGCGCCTCAGACTCCACCAAGGGGCTGCCTCTGCCCGCCTACATCAAGCAGGAGGAAGGGGGCAGTGTGGCCGTGTGCACGGGCAACCCCCCCAGCTGCTCCCAGACCCCGCTCAGCGTCCTGTCCCCCGCCGCCTTTGTACAGAACATCATCCGCAAGGTCAAGTCCGAGATCGGGGATGCCGGCACCTACTTCGACCAGCACTGGGCGGTCGAGAGAGGCGGGCTTGCTGGCGGCAACAGCACCCGCCCGTTCACCTCcgtctccccttctctctcctcctcctcctcctccggctACTCCGCCCTGCCCCGGCCCTGGCCCCGGCCCGAGAACGGAGAGAGCCTGCCCAACAGCGAGGAGGCCTCCGCCGCCGAGGAGGAGCCCGGGCGCCCCCTGGAGGTGAAGGTGGAGGCCGACGCCTCAGGCAGCGGTGACGCCCAGGGCCCCACCGGCCGCCTCTCGTACTACCCTGCCTACGTGCCCCGCACCCTCAAACCCACCGTGCCGCCCCTCACACCGGAGCAGTACGAGATGTACATGTACCGTGAGGTGGACACCATCGAGCTCACGCGGCAGGTCAAGGAGAAGCTGGCCAAGAACGGCATCTGCCAGAGGATCTTCGGAGAAAAGGTGCTGGGCCTGTCCCAGGGCAGTGTGAGTGACATGCTGTCTCGACCCAAACCCTGGAGCAAGCTGACACAGAAAGGCCGGGAGCCCTTCATCAGGATGCAGCTCTGGCTCCTCGACCAGCTGGGCCAGGGCATCAGCCAGCCCACCAGCCACAGCCACTCCCTGGATAAGAGCCCTGTCCAGCCCCGCTCCTCGCCCTCCCCGCCCCCTAGTCCAGTGGAGGAGCAGCGaagccccctgctggagccGGTCAGCCTGGCCCTGGAGAGCAGTAAAGAGAACCAGCAGCCTGAGGGCCAGGGCGCCTCCCCTGCCCTGCCCGGAGGCAAACCTGCACCCAGCCACCTCTCCCcgccccaccaccaccaccaccaccaccatcaccaccaccacccccagaGCTTGCTGGGCATCCAGGAGCTGGTCGCCATGTCCCCAGAGCTGGACACCTACTCCATCACCAAGAGGGTCAAAGAAGTGCTGACCGACAACAATCTGGgccaGCGTCTGTTTGGGGAGAGCATCCTGGGTCTGACGCAGGGCTCGGTCTCTGACCTGCTGTCCCGACCCAAACCCTGGCACAAGCTCAGCCTCAAGGGCCGGGAGCCCTTCGTCCGCATGCAGCTGTGGCTCAACGACCCCCACAACGTGGAGAAACTGCGCGACATGAAGAAAATGGAGAAGAAAGcctACCTGAAGCGGAGGTACGGTCTCCTGAGCGCAGGCTCCGACAGCGACTCCCCCAGTGCCCGCTCCGACTGCGTCAGCCCTGGCCTCTCACCCGCTGACTTCAGCCCCTTCAGCCAGGTGAAGAAGCCCAGGGTGGTGTTGGCAGCTGAGGAGAAGGAGGCCCTGAAGAAGGCCTATCTGCTGGAGCCCTACCCCTCCCAGCACACCATTGAGCTACTGGCCAACCAGCTCAACCTCAAGACCAACACCGTCATCAACTGGTTCCACAACTACAGGTCTCGGATGCGGCGCGAGGTGCTGGTGGAGGGCATGCAAGACAACGACACCGACGCAGACCCCGCCAGCTACTCCACACCCACCCCCTGCAGCCCTGCTTCAGACACTGAGGACAGGAAGCCCGTGTTCCCTGGCCCTGGAGAGCGCTGCAGCCTGCCAGCCACTCCCAGCCGCCGCCTGGTCACCATCAAACAGGAGAGGCCCGAGGACAGAGACCgagaggaggacgaggaggacgaggaggaggaggaggaggaggagaggcgGTACTCACAGCGCTGCCATGAGGGGAAAACCAAGTGTGTCTCCATGGGCGTCCAATTTCCCTGCCTGCTGAAGAAGGAACGTGAGGAGGGGGCTGCCTACCGAGAGCTGTTGCCTACCCAGCGCTGTCCCAAGAGCCTCCTGGAAGATGGAGCGCTGTGCAGTAGAGTATCAGCATCTTTCCCGGGATCCCTCTCTCCCGATGTCCACCAGCGGCCCGGccagtccaggcaggagagcgAGGACCCTGACAAGACATCCTCTGACCCGGTCAGCTTCAAGGCTGCATCGGAGCCCTCACGGGGCAGTCTGGAGGTGTCCCTGAACTCCCCCTCGGCTGCCTCCTCCCCCGGCCTAATGATGTCTGTCTCCCCCGTCCCATCATCCTCCGCTCCTATCTCCCCGTCCATGCCCAGTGCCACCACCCCCATTCCCGCGAGCCAGAGCTCAGACTCGCTGCCGCCACTCCACAACACCAAGCTCAACAAGAGCACCCAGAGACGCAACGAGAAAATGGCCAACCTCAACAACATCATCCACAGGCTGGAGCGGGCCGCCAACCGAGAGGAGACCCTGGAGTGGGAGTTTTGA
>TU149874
CGTCCAATTTCCCTGCCTGCTGAAGAAGGAACGTGAGGAGGGGGCTGCCTACCGAGAGCTGTTGCCTACCCAGCGCTGTCCCAAGAGCCTCCTGGAAGATGGAGCGCTGTGCAGTAGAGTATCAGCATCTTTCCCGGGATCCCTCTCTCCCGATGTCCACCAGCGGCCCGGccagtccaggcaggagagcgAGGACCCTGACAAGACATCCTCTGACCCGGTCAGCTTCAAGGCTGCATCGGAGCCCTCACGGGGCAGTCTGGAGGTGTCCCTGAACTCCCCCTCGGCTGCCTCCTCCCCCGGCCTAATGATGTCTGTCTCCCCCGTCCCATCATCCTCCGCTCCTATCTCCCCGTCCATGCCCAGTGCCACCACCCCCATTCCCGCGAGCCAGAGCTCAGACTCGCTGCCGCCACTCCACAACACCAAGCTCAACAAGAGCACCCAGAGACGCAACGAGAAAATGGCCAACCTCAACAACATCATCCACAGGCTGGAGCGGGCCGCCAACCGAGAGGAGACCCTGGAGTGGGAGTTTTGAGGGTTCTGTCCCGGTCcatattttccctttctttcttttctgtttttttagattttataaAGAACACAAACTGCATCCCTAACCGGAGGACTCTTAAAGAGTACGTGTTACCTTGCAGGGGGATGCTCTTGAAGATGCTTCCCTTGCATTTCAGCTAGTACCTCCTCAAAACGGCCTACTTCTTACCTGCCTGGACCTCACTTTGAAGGATGTGGAAAACTGCGGAGCGTCGTTTTAACACTTAAAAAGAATgcaggaaaaaatgtaaaacagaactCCTCGAGATTacttttagaaaagaaaaaaaaaatatttataaatgtgttttaggtattttaataatggattctactttgaaatatatttaacagccctagctgttttgttttaaaaaaggaaaaaaacaaacagaaaaaagacaacCAGACTCTGCAGCTGTTGTGTCATTAAATGCACACTGAAGTCCTGTAGTTTGCCGATgtatgagattaaaaaaaaaagacttttgTCTTAAGCCATCAAAAAAGCactatgattatttaaaaaagactgACCAAATTTGCTAATTTTTGAATAGcagtttttcagattttttttttgtctttaaga

Function

GO: NA

KEGG:

id description
K09313 CUTL; homeobox protein cut-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00018913 True 4389 mRNA 0.62 18 25466091 25484837
TU149874 False 1150 TUCP 0.47 1 25484297 25485446

Neighbor

gene id symbol gene type direction distance location
AMCG00018909 NA coding upstream 171934 25287408 ~ 25294157 (+)
AMCG00018900 NA coding upstream 204809 25245645 ~ 25261282 (+)
AMCG00018901 LOC103152401,LOC106931442,LOC103469522,LOC102221826,LOC101074150,LOC101161315,LOC105014186,LOC106579958,LOC103397036 coding upstream 252936 25203672 ~ 25213155 (+)
AMCG00018902 LOC103365013,LOC102776280 coding upstream 277249 25171485 ~ 25188842 (+)
AMCG00018908 NA coding upstream 321293 25136587 ~ 25144798 (+)
AMCG00018915 NA coding downstream 48657 25534103 ~ 25544880 (+)
AMCG00018914 NA coding downstream 70010 25555456 ~ 25582394 (+)
AMCG00018918 mtfp1,LOC102779258 coding downstream 98870 25584316 ~ 25592691 (+)
AMCG00018919 NA coding downstream 116473 25601919 ~ 25611337 (+)
AMCG00018921 med13l coding downstream 143291 25628737 ~ 25642468 (+)
G119529 LOC108239856,LOC103139559,LOC107385499,LOC103366907 non-coding upstream 127902 25331390 ~ 25338189 (+)
G119523 NA non-coding upstream 152596 25303186 ~ 25313495 (+)
G119429 NA non-coding upstream 615041 24850836 ~ 24851050 (+)
G119416 NA non-coding upstream 630382 24799950 ~ 24835709 (+)
G119419 NA non-coding upstream 656272 24807747 ~ 24809819 (+)
G119574 NA non-coding downstream 399 25485845 ~ 25488149 (+)
G119669 NA non-coding downstream 553833 26039279 ~ 26078413 (+)
G119682 NA non-coding downstream 622023 26107469 ~ 26107849 (+)
G119684 NA non-coding downstream 627426 26112872 ~ 26113131 (+)
G119703 NA non-coding downstream 790939 26276385 ~ 26276585 (+)
G119507 NA other upstream 198310 25234082 ~ 25267781 (+)
AMCG00018820 NA other upstream 3568391 21848370 ~ 21897700 (+)
G118815 NA other upstream 4276845 21187956 ~ 21189246 (+)
AMCG00018802 dnah10,LOC102798403,LOC105907537,LOC105907538 other upstream 4693505 20723610 ~ 20772586 (+)
AMCG00018800 ddx55,gtf2h3,eif2b1 other upstream 4770897 20679280 ~ 20695194 (+)
AMCG00018922 med13l other downstream 193231 25678677 ~ 25718426 (+)
G119762 NA other downstream 975174 26460620 ~ 26461227 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036156 cux2b coding NC_007119.7 CM002892.2 4044578 ~ 4100365 (-)
grasscarp (Ctenopharyngodon idella) CI01000010_09724322_09747373 CUX2, CUX2B coding CI01000010 null 9724102 ~ 9747373 (-)