AMCG00019003 (maf1)


Basic Information

Item Value
gene id AMCG00019003
gene name maf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 478027 ~ 496837 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019003
ATGCCCGGCTCCGAGGGGAAGTTTGACTTTGCGATCGACCGGGGGGGCACCTTCACCGACGTGTTCGCCCAATGCCCGGGGGGGGCGGAGCGCGTGCTCAAGCTGCTGTCGCACGACCCCCAGCATTACAGGGACGCGCCCACCGAGGGGATCCGCAGGATACTGGAACAGgAGACTGGGCGAGTCTTCCCCCGGGAAGAGCCCCTGGATCCCTCTCTGATTGGCTGGATCCGCATGGGTACCACGGTGGCGACCAACGCACTGCTGGAGCGCCAGGGGGCCCGGTCAGCCCTGCTCGTCACCCGCGGCTTCAAGGACCTGCTGCACATCGGCACCCAGGCTCGGCCCCTGCTGTTCGACCTGgagGTGAGGATGCCCGAGCTGCTTACAGGCGAGGCAGTGAGTGTGTGGCGGTCTGTGGATCTGGTGCAAGTGGAGGCCGACCTGCGGGGTGTGCTGTCGCGTGGGATCACCAGCCTGgccgtgctgctgctgcactCCTACACGTCACCGGGTGATGCCCATGGTGAGGGCGGTGCCCCGGGGCCTGACCGCCGCGGCGGACGCCTACCTCACACCCCGCATCACCGAgGGGTCCGGGTGCTGTTCATGCAGTCGGACGGGGGGCTCACCCCCATGGCCCAGTTCTCGGGGGCCAGGGCCGTGCTGTCAGGGCCGGCGGGGGGCGTGGTCGGCTATGCTATGACATCATACAGCCAGGAGGACGGGCAGCCAATCATCGGCTTCGACATGGGGGGCACTTCCACGGATGTGAGCCGTTTCGGGGGGCAGTTTGAGCATGTGCTGGAGGCCACGACAGCGGGGGTCCCCCTGCAGGCCCCTCAGTTGGACATTAACACTGTGGCGGCAGGCGGGGGGTCCCGGCTCTTCTacaggtCAGGGATGTTTGTCGTGGGACCCGAGTCAGCAGGAGCGCACCCTGGGCCGGCCTGCTACAGGAAAGGGGGACCCCTCACCGTGACAGACGCCAACCTGGCGCTGGGCCGGCTACTGCCCTCCTTCTTCCCGCACGTGTTCGGGCCAGGCGAGGACGAGCCGCTGTGCCGCGAGGAGAGCCTACGGCAGCTCTCCGCCCTCACCGCCCGCATTAACGCTGGCCAACCACAGAGCGGCGCCACGGGGGGGATGAGTGTGGAAGAGGTGGCCATGGGCTTCATCAGGGTGGCCAACGAGGCCATGTGCCGCCCAATCAGAGCGCTCACGCAGGCGAAGGGCCACGACACGTCTCGTCACGTGTTGGCATGTTTTGGAGGAGCGGGGGGGCAGCACGCGTGTGCCATCGCACGGGCTCTgggcatgaagactgtcctCATTCACAAgtACAGTGGCGTTCTGTCTGCCTATGGGCTGGCGCTGGCGGACGTGGTGGAGGAGGCGCAGGAGCCGTGTGCGTGTCGCTACGAGACGCAGTCCTTCGCCCGGCTGGACGAGCGCATTGAGCAGCTCACACAGCGCTGCATGGACGCGCTGCGCAAGCACGGCTTCAGCAGTGCGCAGGTGAGCTGCGAGGTGTTCCTGCACCTGCGCTACGACCGCACGGACTGCGCCCTCATGGTCTCCGCCCGCGGCTACCCCAGCAGTGCCCAGTCCTGCCACGCCGGAGACTTCCGCAGCGCCTTCATGGACCGgTATCTGAAGGAGTTTGGCTTCACTATCCCGGAGCGCCCCATAGTGGTGGATGACATCCGGGTCAGAGGTTGTGGGAGGTCAGGGGTCACGACCCAGAACATGACCCCAAACAAGCAGGGGCCGCCCAGGGTCACCACGGTGACACAGTGTTACTTTGACAGTGGTTACCTGGATACCAATGTGTACCTGCTGGAGGACCTGTCATATGACCACAACATCACAGGGCCAGCGCTCATCATCGACAAGAACAGCACGGTGCTGGTGGAGCCGGGCTGTGAGGCCGAGCTGACAGCGGGGGGCGCTGTGAGGTTGAGTGTGGGCTCCGGGGCGCCATGGGCACTGGACACGCGTCTGGACAGTGTGCAGCTGTCCATCTTCTCCCATCGATTCATGAGTATCGCTGagcaGATGGGCCGGGTGCTGCAGCGGACCTCCATATCCACCAACATCAAGGAGCGTCTGGACTTCTCGTGCGCCGTGTTCGGGCCGGATGGGGGGCTTGTGTCCAACGCACCGCACATCCCTGTGCACCTGGGCGCCATGCAGGAGACCGTGCAGTACCAGCTGCGTGCCCTGGGGGCGTCTCTGAGGGAGGGGGACGTGATCCTCAGTAATCACCCCTCCGCGGGGGGCAGCCACCTGCCCGACCTCACCGTCATCACCCCGGTGTTCAGGCCGGGGGTCGCCGGTCCCGTGTTCTTCGTGGCCAGCAGGGGTCACCATGCCGACATCGGGGGGGTCACGCCAGGCTCGATGCCCCCCCACTCCACCTCGCTGCGGCAGGAGGGGGCCGACAACCTCTCGGACCTGCGGGCGCAAGTGGCAGCCAATCGGAGAGGGAGCCAGCTGGTGGGGGAGCTGATTGACAGCTATGGTCTGGAGGTGGTTCAGGCTTACATGGGCTATatacagAGTAACGCCGAGCTGGCCGTCAGGGACATGCTGAAGGAGTTCGCTCGTCGCCGCCGGCAGCAGACGGGCTACCTGCAGGTGCAGGCAGAGGACCACATGGACGATGGCACGCCAATCAGACTGTGCGTCCAGATCGACGAGCAGGAGggCAGCGCGGTGTTTGATTTCGGGGGCACGGGGCCGGAGGTGTGGGGGAACTGCAACGCACCCAGAGCCATCACTCTGTCCGCCCTCATCTACTGCCTGCGCTGCATGGTGGGCCAAGACATCCCCCTCAACCAGGGCTGTCTGGCCCCAGTGTCGGTGCTGCTGCCGCCCGGCTCCATCCTGCACCCGTCCCCGGAGGCCGCGGTGGTGGGCGGGAacgtgctgacgtcacagagagTGGTGGACGTCATCCTGAGAGCCTTCGGGGTCTGCGCTGCGTCGCAGGGCTGGGGCTACTATGAGACGGTGGCGGGGGGTGCGGGGGCGGGGCCAGGCTGGCATGGGCGGAGCGGCGTGCACAGTCACATGACCAACACCCGCATCACCGACCCCGAGATACTGGAGAGGAGATACCCGGTGGTCCTGCAGCGGTTCAGCCTGCGGGGGGGCTCCGGGGGCGCGGGGCGCTGGCGGGGGGGGGATGGCGTGCTGAGGGAGCTGCTGTTCCGGGAGCCAGTGGTCCTCTCTGTGCTGACGGAGAGACGCAGCACACGCCCCTATGGCCTCAACGATCGACCCGGAGCCGCCGCGCACTACGACCTCGTCCCGGACGGAGGCAGGCTCTTCTGGTTGTGTTTTCACTCGGCCCCGGACGTCGCGACGGCGGAGGGGATGCCGCTCCGGTCGGAGGAGTGCGCGTCTGTCAGTGTCAGCCGCCCGACCCGCCAGCGGCTTCCGCTCCCACAGATCCCCGGCCCCGGCAGCGCGATTACCGCAGCTCCGGAGCGGCAGCAGCTGCTGACTGCACCCCCAGAGCCCCCGACACTGTACCGCCTCGACAGCCACAACCACAGCGGCGGCGGCGACAGCGGCAGGGCTGCCTGGCGGGTCCTGCTCgtcctcctgctctctctcaaGCTGCTCTGCCTGGCCCTGAGACTGCCTGCCGGGAGCCAAGCGCCTGATCGGGCTCCAGGGACAAGGACGAGAGAGGCTGGAGCCACAGCCCACAGAGTAACCGCACAGGCCCGACCCTACAGCCAGCTGCTGGAGAGCTCCAGTTTCGAGGCTCTGAGCTCACGACTGTGTGTGGAGACGGGGGACGCCCGCATCATCGGCCGCCTCGAGAGCTACTCCTGTAAGATGGCTGGCGATGACAAGCACATGTTTAAGCAGTTCTGTCAGGAGGGGGAGCCTCACGTCCTGGAGGCCCTGTCCCCTCCCCAGACCGGCGACGGTGCCACCACCCCCCCCAGGCTGAGCCGCAGTGAGGAGGGCGATGGGCCGCTGAGTGACACGTGCTGCAGGAAGACCCTGTTCTACCTCATCGCCACGCTCAACGAGGCTTTCCGCCCCGACTACGACTTCAGCACTGCCCGAGCGCACGCCTTCAGCAGGGAGCCCAGCCTGGCCTGGGTGGTGACGGCTGTGGACGGCAGCCTGTTCTCAGCGGTGGGGGAGGAGTTCAACTCGCTGGGGCCGGAGCTGTGGAGCGCCATCGACCAGGAGATCCACCTGCAGGGCTGCAACATATACAGTTATAACCCAGACCTGGACTCGGACCCATACGGGGAGGAGGGCAGCCTGTGGTCCTTCAACTACCTCTTCTACAACAAGAAGCTCAAGAGGATCGTCTTCTTCACCTGCCGCTCCGTCAGTGGCTATGGGCTGGACTCCCTGGACGAGGACCTGGACATGGAGCTGGATGATGAGCAGTACGAGGAGGAGAAGGACAGCTTCACTGAGGAcagATCAGTTCTCAGTCGTCCCTGTGCTGTAGAGTTCAGCCAGTGTTGGCGCACTGACAGCCTGTGCCGG

Function

symbol description
maf1 Enables RNA polymerase III type 1 promoter sequence-specific DNA binding activity; RNA polymerase III type 2 promoter sequence-specific DNA binding activity; and RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Involved in negative regulation of transcription by RNA polymerase I and negative regulation of transcription by RNA polymerase III. Located in nucleolus and nucleoplasm. Part of cytoplasm. Is active in nucleus.

NR:

description
PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01469 OPLAH, OXP1, oplAH; 5-oxoprolinase (ATP-hydrolysing)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019003 True 4527 mRNA 0.66 33 478027 496837

Neighbor

gene id symbol gene type direction distance location
AMCG00018994 NA coding downstream 59761 416156 ~ 418266 (-)
AMCG00018993 NA coding downstream 66270 405369 ~ 411757 (-)
AMCG00018995 NA coding downstream 87213 382423 ~ 390814 (-)
AMCG00018996 NA coding downstream 95955 363203 ~ 382072 (-)
AMCG00018987 NA coding downstream 168045 298834 ~ 309982 (-)
AMCG00019001 gpaa1 coding upstream 17966 514803 ~ 518847 (-)
AMCG00019002 foxh1,LOC108431400,LOC106590409 coding upstream 28918 525755 ~ 534393 (-)
AMCG00019006 NA coding upstream 97938 594775 ~ 609647 (-)
AMCG00019010 NA coding upstream 172546 669383 ~ 670387 (-)
AMCG00019015 NA coding upstream 216033 712870 ~ 723666 (-)
G30612 NA non-coding downstream 63745 413888 ~ 414282 (-)
G30594 sspo non-coding downstream 210100 266073 ~ 267927 (-)
G30593 NA non-coding downstream 217962 259434 ~ 260065 (-)
G30539 NA non-coding downstream 403877 73888 ~ 74150 (-)
G30760 NA non-coding upstream 25282 522119 ~ 523996 (-)
G30784 NA non-coding upstream 215875 712712 ~ 733413 (-)
G30797 NA non-coding upstream 337621 834458 ~ 839109 (-)
G30809 NA non-coding upstream 390812 887649 ~ 894190 (-)
G30823 NA non-coding upstream 554248 1051085 ~ 1053885 (-)
AMCG00018991 NA other downstream 931 473449 ~ 477096 (-)
AMCG00018992 NA other downstream 23263 452955 ~ 454764 (-)
AMCG00018988 NA other downstream 140394 225374 ~ 337633 (-)
AMCG00018975 kcnh2b,kcnh2,LOC107713341,LOC106590277 other downstream 323502 144253 ~ 154525 (-)
G30729 NA other upstream 1895 498732 ~ 500189 (-)
AMCG00019007 LOC106613553,LOC108443229 other upstream 117561 614398 ~ 634293 (-)
G30849 NA other upstream 677687 1174524 ~ 1174983 (-)
AMCG00019024 NA other upstream 678194 1175031 ~ 1177566 (-)
AMCG00019031 LOC107567020,LOC106939174 other upstream 742874 1239711 ~ 1260637 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033955 MAF1 coding NC_007118.7 CM002891.2 40081630 ~ 40092016 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_11698637_11702653 MAF1.L, MAF1 coding CI01000026 null 11698637 ~ 11703649 (+)