AMCG00019004 (gpt,LOC103482433)


Basic Information

Item Value
gene id AMCG00019004
gene name gpt,LOC103482433
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 575957 ~ 586263 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019004
CCCGGACGGTGCTTTTCCATATTCTCTGTATTAAGTGGCGGCTCTTCCCCAGATCTCTGCTGCTCCCTGGCATTTACACTCAATTTGAACTTTTTGCTATTATTGCTATTTCACCCCAGTATTGtatgtgattattatatatttgccTTCCCTTGCCGCTACTTGGCAGCTGCGTGCTCCATGCTGCCTCCCAGCCGCAGCGGCGTGGCCGGGGCGGCGCAGCGGTGGTGCTGGGCGGCGCTAGCGGGACTGGGTCGCTCTCGTCCCGGCCCCCGCACCGCCCTGAGCCCCGCTCTGAGCCCCGCTGTCCCGCTCCTCTCGTCCCGCAGGACTGTGTGCGGGCTGACCGGCAGGAAGATGAGCCAGAACGGCGTGGCGCCGCACCGGGGGAAGGTGCTCACCGCCGAGACCATGAACCCCAATATCAGGCGGGTGGAGTACGCCGTGCGGGGGCCCATAGTGCAGAGAGCCGTGGAGATCGAGAAGGAGCTCAAAGAGggtgtgAAGAAGCCTTTCTCAGAGGTGATCAGGGCCAACATTGGGGACGCCCACGCCATGGGCCAGCGACCAATCACCTTCCTCAGACAGGTCCTGGCCCTCTGCTCCTACCCTGAGCTCCTGAGTGACAAGCAGTTTCCGGAGGATGCCAAGCAGCGCGCACGCCGCATCCTGCAGGGCTGTGGAGGGGGCAGCATCGgggcgTACAGTGCCAGTCAGGGGCTGGAGTGCGTGCGGCAGGACGTGGCATGGTACATCGAGCACAGGGACGGAGGGATCCCCTCTGACCCCAACAACATCTACCTCTCCACTGGAGCCAGCGACGCCATTGTGACGATGCTGAAGCTGCTGGTGAGCGGCGTGGGTGCGAGTCGCACTGGCGTGCTGATCCCCATCCCCCAGTACCCGCTGTATTCCGCTGCGCTGGCAGAGCTGGGCGCCGTGCAGGTGGGATACTACCTGAACGAGGAGAGCTGCTGGAGCCTGGACACCCAGGAGCTGCACCGGGCCCTGTCCCAGGCCCGGCAGCACTGCCAGCCGCGGGTACTCTGCATCATCAACCCCGGCAACCCTACCgGCCAGGTCCAGAGCCGGAAGTGCATCGAGGATGTGATCCGATTTGCCGCCGAGGAGAAGCTCTTCCTGATGGCTGACGAGGTGTACCAGGACAACGTGTACGCCCCCGGCTGTGAGTTTCACTCCTTTAAGAAAGTTCTGTGTGAGATGGGCCCCAAGTTCTCTGACACCGTGGAGCTCGCCTCCTTCCACTCCACCTCCAAGTGCTACATGGGAGAGTGCGGTTTCCGTGGCGGCTACATGGAGGTGTTGAACCTTGACCCGGAAGTGAAAGCCCAACTGACGAAGCTGGTGTCCGTGCGGCTGTGCCCCCCTGTGCCCGGCCAGGCGCTGCTGGACCTGGTGGTCAACCCCCCCCAGCAGGACGAGCCCTCGCACGCGCAGTTCATCAAGgagCGCAGTGCCGTTCTCCTCTCTCTGGGGGAGCGCGCCCGGCTGGCGGAGGAGCTGCTGAACGCGGTGCCTGGGATCAGCTGCAACCCTGTGCAGGGAGCCATGTACTGCTTCCCCCGCATCACGCTGCCCCCCCGCGCCCTGCAGCAGGCTCAGGGCCAGGCGCCGGATATGTTCTACTGTATGCGGCTACTGGAGGAAACCGGCATCTGCCTGGTGCCGGGCAGCGGCTTCGGACAGAGGGAGGGCACATACCACTTCAGGATGACTATCCTCCCCCCCACAGAGAAGCTGAAGGTGTTACTGAGCAAACTGAGGGATTTCCATCAGAGGTTCACCACAGAGTTCTCCTAgagccacccctccccccccagccAGAAGTGTGTGTGAACGAGTTGAGTGAGTGAcgcactgtgtgtgtcagtgcatctGCGTGTGAGCTGACTGAGGGAATAGtcattatttgtagttttttgtaGGTGTCATTGATTCAAGTTGATCTTAAAGCTGATTGAGCACATAATCACCCCAATGCCTTCAGGTTCCTTCATGTACTACACCTCCTAACCCCGCCCTGCCCCGCCCATCTCACAGTGGACACACAGTGCTCTGAGGGACCCTGCGGACCCAGACACCTACTggtgggggaggaggaaggagtaaaaaaacagaatgaagaGCAAGACGATGACGCGACCTGTTCCCCTGTCCGCTGTGGGGGGGTCCCTGGGGTTAGGGGTGTGATGGTGGGGTCAGGGGCTCTAGCTCTTGAACATCTGGAACCACATATGCCTCTCGTGCCAAACTCAGGGCTGCCCAGCTCTGGTGCTGCAGGGccgcagtacagtgcagtaaactGCCTTCAGGTTTTCATTCCTTTAATTCCTCTTAAAGTCACCAAGGTCAATGGACCTGTTACCCCGCTGTACCTGGGCCCCCCTGTCCTTCGGGGGCTGGGGAATCGGACAGCGACTGAGCCCCGCTGGTGGAGCCCCGCTGGTGGAGCCCCGCTGGTTGAGCCTGTCCAGTGGGGCAACACTAACAGCAGAGGGCGCCGTTTCCTCTCCTGACCAGAGCTACAGTCTCAAAGACTGGCAGTGCAGGGGATTGCGCGTGAAACCCCCTAGTGGTTAAAGCCATACACCACACCACTGAGCTCAGCACCATTGCAGTGACAGGAAATAAAGTGCACAACAATGTTTCCTTAAAAGCAGAATTTGCACTCAAAGCTGTGCTGTGTATTACACTCTCCCCcccctgtactgtactgcagacTGCAGCCCCCCAGGCCAGGGCTGCCCAATAGTGCCTAGACTTTATCCATTATCGGGGAGGATTTGACTCCTCCCAGCACAGTCTCCCACCCCTGGCCCTGCAGCACCTTGAGTCTCCTGCCTGATATGCAGTAATTCGCTGACAGGAGCCACACTGGCCGAGCCTGGGTAAGGTCTCAGCTGTGCTGTTACTACACactatacacatatacacacgtgcacacatgcacacacatctgTGTGTAGGGCATGTGAAGGAACAGAGAGCTCATGGGCCCGTGCTCTCCTGTGCTGTGGCCTCATGCGTGGCGTGTGGGTGCtgtttacacacagacacacatcgGGATCTGATCACTTCCTCCCGCAGCCCGGTGCAGAGATGGAGCGGTGCTGTTCACGGCTGGACAAGAGTCCTGTACGGCCGTGAGAAGGAAATTTCATACTGCACAGCCACACACAGATACAGGACTCCTGACAGTTGGAACTGCGTGCAGCACATGTGTCGCTCTCGCACACTCGCCCTCCCTTGCCCATGCACTGGCGGGCAGCCTGTGTGCGTGCGCTGTGTGAGCCACGGGTGTTTTCCAATGTGAGGCCGTGGAGAGGGACAGAGGCACGTCGGCCAAATGATTATGTAatggtagtaataataataattacaaaaataaatttcaaGTGCCTTGAAAAAGCCAGTGCAGTGAATCCCAAATCTGCTTTCCTTCTCTTAGCCTTCCAGCTCtttcctgtctctccctcttcctttctctcactccactctcctgtctcttcctctctctatctcttgcTCCCTCTCCAGTCCCTCCTCCATtatcctcctctctctcactctctcctctgCTCCCAGGTGGCTGCTGTTCACTGTCTTgtgtttaaatggaaaacaaagcaatagaACATTTGACTGGAGCACTGATCTGAATGTGTTAGGAATTAATTGTACTGTGGATCTTAAATGAGACTTAACTGTGAgttccagaaaata

Function

symbol description
gpt Predicted to enable L-alanine:2-oxoglutarate aminotransferase activity. Predicted to be involved in 2-oxoglutarate metabolic process and L-alanine metabolic process. Predicted to act upstream of or within biosynthetic process. Is expressed in liver. Orthologous to several human genes including GPT (glutamic--pyruvic transaminase).

NR:

description
PREDICTED: alanine aminotransferase 1

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019004 True 3744 mRNA 0.58 11 575957 586263

Neighbor

gene id symbol gene type direction distance location
AMCG00018997 NA coding upstream 15360 559335 ~ 560597 (+)
AMCG00019000 NA coding upstream 61526 506635 ~ 514431 (+)
AMCG00018998 exosc4,exos4 coding upstream 72526 498649 ~ 503431 (+)
AMCG00018989 NA coding upstream 102699 460159 ~ 473258 (+)
AMCG00018990 NA coding upstream 161085 411483 ~ 414872 (+)
AMCG00019005 NA coding downstream 11565 597828 ~ 599198 (+)
AMCG00019008 NA coding downstream 22512 608775 ~ 623347 (+)
AMCG00019009 NA coding downstream 115061 701324 ~ 702246 (+)
AMCG00019011 NA coding downstream 157891 744154 ~ 751040 (+)
AMCG00019013 NA coding downstream 194130 780393 ~ 780629 (+)
G30619 NA non-coding upstream 79437 443168 ~ 496520 (+)
G30583 NA non-coding upstream 204159 370446 ~ 371798 (+)
G30549 NA non-coding upstream 293813 227976 ~ 282144 (+)
G30699 NA non-coding downstream 422998 1009261 ~ 1026744 (+)
G30700 NA non-coding downstream 426748 1013011 ~ 1053885 (+)
G30723 NA non-coding downstream 552242 1138505 ~ 1139858 (+)
G30857 NA non-coding downstream 600134 1186397 ~ 1187225 (+)
G30866 NA non-coding downstream 609669 1195932 ~ 1196202 (+)
AMCG00018999 NA other upstream 19053 549516 ~ 556904 (+)
G30589 NA other upstream 177285 395501 ~ 398672 (+)
G30527 NA other upstream 501726 73792 ~ 74231 (+)
AMCG00019012 NA other downstream 152963 739226 ~ 744083 (+)
G30698 NA other downstream 409064 995327 ~ 1001213 (+)
AMCG00019029 NA other downstream 611723 1197986 ~ 1199095 (+)
AMCG00019030 NA other downstream 627413 1213676 ~ 1237637 (+)
G30877 arhgap39,LOC106560380,LOC106584197 other downstream 667103 1253366 ~ 1253735 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location