RNA id: AMCG00019004


Basic Information

Item Value
RNA id AMCG00019004
length 3744
RNA type mRNA
GC content 0.58
exon number 11
gene id AMCG00019004
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 575957 ~ 586263 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGGACGGTGCTTTTCCATATTCTCTGTATTAAGTGGCGGCTCTTCCCCAGATCTCTGCTGCTCCCTGGCATTTACACTCAATTTGAACTTTTTGCTATTATTGCTATTTCACCCCAGTATTGtatgtgattattatatatttgccTTCCCTTGCCGCTACTTGGCAGCTGCGTGCTCCATGCTGCCTCCCAGCCGCAGCGGCGTGGCCGGGGCGGCGCAGCGGTGGTGCTGGGCGGCGCTAGCGGGACTGGGTCGCTCTCGTCCCGGCCCCCGCACCGCCCTGAGCCCCGCTCTGAGCCCCGCTGTCCCGCTCCTCTCGTCCCGCAGGACTGTGTGCGGGCTGACCGGCAGGAAGATGAGCCAGAACGGCGTGGCGCCGCACCGGGGGAAGGTGCTCACCGCCGAGACCATGAACCCCAATATCAGGCGGGTGGAGTACGCCGTGCGGGGGCCCATAGTGCAGAGAGCCGTGGAGATCGAGAAGGAGCTCAAAGAGggtgtgAAGAAGCCTTTCTCAGAGGTGATCAGGGCCAACATTGGGGACGCCCACGCCATGGGCCAGCGACCAATCACCTTCCTCAGACAGGTCCTGGCCCTCTGCTCCTACCCTGAGCTCCTGAGTGACAAGCAGTTTCCGGAGGATGCCAAGCAGCGCGCACGCCGCATCCTGCAGGGCTGTGGAGGGGGCAGCATCGgggcgTACAGTGCCAGTCAGGGGCTGGAGTGCGTGCGGCAGGACGTGGCATGGTACATCGAGCACAGGGACGGAGGGATCCCCTCTGACCCCAACAACATCTACCTCTCCACTGGAGCCAGCGACGCCATTGTGACGATGCTGAAGCTGCTGGTGAGCGGCGTGGGTGCGAGTCGCACTGGCGTGCTGATCCCCATCCCCCAGTACCCGCTGTATTCCGCTGCGCTGGCAGAGCTGGGCGCCGTGCAGGTGGGATACTACCTGAACGAGGAGAGCTGCTGGAGCCTGGACACCCAGGAGCTGCACCGGGCCCTGTCCCAGGCCCGGCAGCACTGCCAGCCGCGGGTACTCTGCATCATCAACCCCGGCAACCCTACCgGCCAGGTCCAGAGCCGGAAGTGCATCGAGGATGTGATCCGATTTGCCGCCGAGGAGAAGCTCTTCCTGATGGCTGACGAGGTGTACCAGGACAACGTGTACGCCCCCGGCTGTGAGTTTCACTCCTTTAAGAAAGTTCTGTGTGAGATGGGCCCCAAGTTCTCTGACACCGTGGAGCTCGCCTCCTTCCACTCCACCTCCAAGTGCTACATGGGAGAGTGCGGTTTCCGTGGCGGCTACATGGAGGTGTTGAACCTTGACCCGGAAGTGAAAGCCCAACTGACGAAGCTGGTGTCCGTGCGGCTGTGCCCCCCTGTGCCCGGCCAGGCGCTGCTGGACCTGGTGGTCAACCCCCCCCAGCAGGACGAGCCCTCGCACGCGCAGTTCATCAAGgagCGCAGTGCCGTTCTCCTCTCTCTGGGGGAGCGCGCCCGGCTGGCGGAGGAGCTGCTGAACGCGGTGCCTGGGATCAGCTGCAACCCTGTGCAGGGAGCCATGTACTGCTTCCCCCGCATCACGCTGCCCCCCCGCGCCCTGCAGCAGGCTCAGGGCCAGGCGCCGGATATGTTCTACTGTATGCGGCTACTGGAGGAAACCGGCATCTGCCTGGTGCCGGGCAGCGGCTTCGGACAGAGGGAGGGCACATACCACTTCAGGATGACTATCCTCCCCCCCACAGAGAAGCTGAAGGTGTTACTGAGCAAACTGAGGGATTTCCATCAGAGGTTCACCACAGAGTTCTCCTAgagccacccctccccccccagccAGAAGTGTGTGTGAACGAGTTGAGTGAGTGAcgcactgtgtgtgtcagtgcatctGCGTGTGAGCTGACTGAGGGAATAGtcattatttgtagttttttgtaGGTGTCATTGATTCAAGTTGATCTTAAAGCTGATTGAGCACATAATCACCCCAATGCCTTCAGGTTCCTTCATGTACTACACCTCCTAACCCCGCCCTGCCCCGCCCATCTCACAGTGGACACACAGTGCTCTGAGGGACCCTGCGGACCCAGACACCTACTggtgggggaggaggaaggagtaaaaaaacagaatgaagaGCAAGACGATGACGCGACCTGTTCCCCTGTCCGCTGTGGGGGGGTCCCTGGGGTTAGGGGTGTGATGGTGGGGTCAGGGGCTCTAGCTCTTGAACATCTGGAACCACATATGCCTCTCGTGCCAAACTCAGGGCTGCCCAGCTCTGGTGCTGCAGGGccgcagtacagtgcagtaaactGCCTTCAGGTTTTCATTCCTTTAATTCCTCTTAAAGTCACCAAGGTCAATGGACCTGTTACCCCGCTGTACCTGGGCCCCCCTGTCCTTCGGGGGCTGGGGAATCGGACAGCGACTGAGCCCCGCTGGTGGAGCCCCGCTGGTGGAGCCCCGCTGGTTGAGCCTGTCCAGTGGGGCAACACTAACAGCAGAGGGCGCCGTTTCCTCTCCTGACCAGAGCTACAGTCTCAAAGACTGGCAGTGCAGGGGATTGCGCGTGAAACCCCCTAGTGGTTAAAGCCATACACCACACCACTGAGCTCAGCACCATTGCAGTGACAGGAAATAAAGTGCACAACAATGTTTCCTTAAAAGCAGAATTTGCACTCAAAGCTGTGCTGTGTATTACACTCTCCCCcccctgtactgtactgcagacTGCAGCCCCCCAGGCCAGGGCTGCCCAATAGTGCCTAGACTTTATCCATTATCGGGGAGGATTTGACTCCTCCCAGCACAGTCTCCCACCCCTGGCCCTGCAGCACCTTGAGTCTCCTGCCTGATATGCAGTAATTCGCTGACAGGAGCCACACTGGCCGAGCCTGGGTAAGGTCTCAGCTGTGCTGTTACTACACactatacacatatacacacgtgcacacatgcacacacatctgTGTGTAGGGCATGTGAAGGAACAGAGAGCTCATGGGCCCGTGCTCTCCTGTGCTGTGGCCTCATGCGTGGCGTGTGGGTGCtgtttacacacagacacacatcgGGATCTGATCACTTCCTCCCGCAGCCCGGTGCAGAGATGGAGCGGTGCTGTTCACGGCTGGACAAGAGTCCTGTACGGCCGTGAGAAGGAAATTTCATACTGCACAGCCACACACAGATACAGGACTCCTGACAGTTGGAACTGCGTGCAGCACATGTGTCGCTCTCGCACACTCGCCCTCCCTTGCCCATGCACTGGCGGGCAGCCTGTGTGCGTGCGCTGTGTGAGCCACGGGTGTTTTCCAATGTGAGGCCGTGGAGAGGGACAGAGGCACGTCGGCCAAATGATTATGTAatggtagtaataataataattacaaaaataaatttcaaGTGCCTTGAAAAAGCCAGTGCAGTGAATCCCAAATCTGCTTTCCTTCTCTTAGCCTTCCAGCTCtttcctgtctctccctcttcctttctctcactccactctcctgtctcttcctctctctatctcttgcTCCCTCTCCAGTCCCTCCTCCATtatcctcctctctctcactctctcctctgCTCCCAGGTGGCTGCTGTTCACTGTCTTgtgtttaaatggaaaacaaagcaatagaACATTTGACTGGAGCACTGATCTGAATGTGTTAGGAATTAATTGTACTGTGGATCTTAAATGAGACTTAACTGTGAgttccagaaaata

Function

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38301 lncRNA upstream 79437 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 79437 492560 ~ 496520 (+) True G30619
TU38302 lncRNA upstream 79437 494320 ~ 496520 (+) False G30619
TU38232 lncRNA upstream 204159 370446 ~ 371798 (+) True G30583
TU38203 lncRNA upstream 320260 255326 ~ 255697 (+) True G30554
TU38383 lncRNA downstream 152963 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 422998 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 426748 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 552242 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 552242 1138505 ~ 1139858 (+) False G30723
AMCG00018997 mRNA upstream 15360 559335 ~ 560597 (+) True AMCG00018997
AMCG00018999 mRNA upstream 20606 549516 ~ 555351 (+) True AMCG00018999
AMCG00019000 mRNA upstream 61526 506635 ~ 514431 (+) True AMCG00019000
AMCG00018998 mRNA upstream 72526 498649 ~ 503431 (+) True AMCG00018998
AMCG00018989 mRNA upstream 102699 460159 ~ 473258 (+) True AMCG00018989
AMCG00019005 mRNA downstream 11565 597828 ~ 599198 (+) True AMCG00019005
AMCG00019008 mRNA downstream 22512 608775 ~ 623347 (+) True AMCG00019008
AMCG00019009 mRNA downstream 115061 701324 ~ 702246 (+) True AMCG00019009
AMCG00019012 mRNA downstream 154210 740473 ~ 744083 (+) True AMCG00019012
AMCG00019011 mRNA downstream 157891 744154 ~ 751040 (+) True AMCG00019011
TU38342 other upstream 19053 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 177285 395501 ~ 398672 (+) True G30589
TU38173 other upstream 501726 73792 ~ 74231 (+) True G30527
TU38402 other downstream 409064 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 647231 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 667103 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1275566 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 1555567 2141830 ~ 2147563 (+) False G31110

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030443 False 5339 mRNA 0.43 12 NC_007113.7 3533117 ~ 3573000 (+)