RNA id: AMCG00019008


Basic Information

Item Value
RNA id AMCG00019008
length 1455
RNA type mRNA
GC content 0.59
exon number 6
gene id AMCG00019008
representative True

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 608775 ~ 623347 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTACAGCAGGGGGCAGAGTTACCTGGCGAACGAAGCTCGTCTGACCAGAATGTCCGTCTTCGAGGTGGGTATGCACCTGACCATGGGGTTGACCTCTGTCAGGAGTGACAGTCAGCTTGACTGGCACCTTCACATCCACCTCCTTCCTCACCACGTTCACAGTGAGCTTGGTGTGAGGAGGGACTTTGGCTGGCAGGCTGACCTGGACCTTCTTCCTCTCGGTCTTGGTGTTGCTGCTTCCCTTTTCCACGGTGAAGGTGTTGCTCACAGAAACGCTGAATTCGTTCTTCACCTTGAACACGTCTACGGAGAAAGTCGATCCCACAGTTATCTGAGTCGAGTTGCTGAAGTTGAAGGTCTCAGTGACCGAGCCCTCGTACTCTCGGCTCAGCTCTGTGGAGAAGCTCTGCTCGTGGTCACCATGGTTCAGGCCACACAAGGAGTCGATGGTGATGGACTTCATCTGCTCTTCCTTCTTGTCCCACAGGACCTCAGCTGTCACTGTCGGCTTCCCTGGCTTCAGAGGGCGCAGGTGGGACAGACGATCATTGAACCAACCATAATCAGGCACGTCATGACCAGCTCTGGCCACCATCTGCACCCCTCCTCTGTCTATGTGTTCGTACAGGACCCAGGCTCCTCTCTGCACTCTGTGGGAGGATGCCACATCATTGAAGGAGCCGTGGCACAGGTTGGTCTCGCAGCCATCTCCACACCACCCTGCTGCATCTGGCACTGGGCTGGACTGGGTTGTTCTGTCCtgtgcagtgttgtgctgtgctgtgatgaCCTCTCCTcttctgtcctgtcctgtcctgttcCGGGCTGGAGTGCAGTGGGTGTGCTGGGCTTTCCTGGGGGTAGAAGAGTGTTCATGAGTTTCAGCTACATCAGAGAGTCGCAGGGCAGATGTACCGTCCCACAGCCGCTGTCTCAGTGCGGGAGGGAGGGCTGGCTGGTCCCTGGGATGCATGCAGTCCCTGCGCGCAGGCCGGTCGTGCCCTCGGGGCAGCTGCACTTGTTGAAGGGGCTGCAGGTGGCACCATGTTGGCAGGGGGGTACACAGGGTGCAGTCACCGCTGTGGAGATGAGCAGGGGCATGGCATTAATCCAGGGGGTGCTGGGAGTGGGGCGGGTGGTCAGAGGGGAGGTGCTGGTGCAGTGCTGCCCCCTGGAGGGCAGAGCGGGTACTCACGGATCAGGCACTGGGGACCGCTGTAGTCTGAAGGACACTGGCATAGATCCGGGGCAGTGCAGCGCCCCCCATTGGCACAGGGCAGCTCACACACCGCTGGAGGAAGACAGagtcagagacagagagcagaaggaCAAAAATGCAGTCAGAGAGGCAGGAGAGCAGGGGACAGTGCAgtcagagagacaggagagcaGGGGACAGTGCAGTCAGAGAGACAGGGGACAGTGcagtcagagagacagaggacagTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU38301 lncRNA upstream 112255 443168 ~ 496520 (+) False G30619
TU38304 lncRNA upstream 112255 492560 ~ 496520 (+) True G30619
TU38302 lncRNA upstream 112255 494320 ~ 496520 (+) False G30619
TU38232 lncRNA upstream 236977 370446 ~ 371798 (+) True G30583
TU38203 lncRNA upstream 353078 255326 ~ 255697 (+) True G30554
TU38383 lncRNA downstream 115879 739226 ~ 741433 (+) False AMCG00019012
TU38404 lncRNA downstream 385914 1009261 ~ 1026744 (+) True G30699
TU38405 lncRNA downstream 389664 1013011 ~ 1053885 (+) True G30700
TU38435 lncRNA downstream 515158 1138505 ~ 1139858 (+) False G30723
TU38436 lncRNA downstream 515158 1138505 ~ 1139858 (+) False G30723
AMCG00019005 mRNA upstream 9577 597828 ~ 599198 (+) True AMCG00019005
AMCG00019004 mRNA upstream 22512 575957 ~ 586263 (+) True AMCG00019004
AMCG00018997 mRNA upstream 48178 559335 ~ 560597 (+) True AMCG00018997
AMCG00018999 mRNA upstream 53424 549516 ~ 555351 (+) True AMCG00018999
AMCG00019000 mRNA upstream 94344 506635 ~ 514431 (+) True AMCG00019000
AMCG00019009 mRNA downstream 77977 701324 ~ 702246 (+) True AMCG00019009
AMCG00019012 mRNA downstream 117126 740473 ~ 744083 (+) True AMCG00019012
AMCG00019011 mRNA downstream 120807 744154 ~ 751040 (+) True AMCG00019011
AMCG00019013 mRNA downstream 157046 780393 ~ 780629 (+) True AMCG00019013
AMCG00019017 mRNA downstream 214652 837999 ~ 847327 (+) True AMCG00019017
TU38342 other upstream 51871 554766 ~ 556904 (+) False AMCG00018999
TU38241 other upstream 210103 395501 ~ 398672 (+) True G30589
TU38173 other upstream 534544 73792 ~ 74231 (+) True G30527
TU38402 other downstream 371980 995327 ~ 1001213 (+) True G30698
TU38636 other downstream 610147 1233494 ~ 1237637 (+) True AMCG00019030
TU38640 other downstream 630019 1253366 ~ 1253735 (+) True G30877
TU38794 other downstream 1238482 1861829 ~ 1871379 (+) False AMCG00019064
TU38962 other downstream 1518483 2141830 ~ 2147563 (+) False G31110

Expression Profile