AMCG00019814


Basic Information

Item Value
gene id AMCG00019814
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 46841448 ~ 46844186 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019814
ATGGTTCTTCCCCTTTGCTGGGGATATGGTCTGGAGAGCTGCTCAATCAACTACAGAGAcaaaagtgtagtgtggtgctTCCACCAGGGCATCAAGAACGTGACCCAAGCCATGGTGAAGGTCCCACCAAATGCCACCCGTATCAACCTCTCTAGAAACCATATTAATGCCCTTCCCTCCTCTGGGGTGTTTTCCGAGTTTCACCAACTGCAGATTCTCACCCTAGACCAGAACCAGGTCTCTTTCCTACACGCCGGTACGTTCAGAGGCCTCAGTGAACTGAAGTTGCTTAACCTCTCCTGCAACTGCCTGTCAGAGATCCAGTCAGGGACATTCCAGGGCTTGTCCCGCCTGAAGAGTCTGTATATGCACAGGAACTCCCTCTCCGATATCCCCTCTGTGTTTTTCCTGTCCCTGCCCCGGATTAAGCTCCTTGACCTGTCTAGGAATAAACTAGAAAGTGTAGGCGGCAATTCAGTCTGGAACAGCAGCACTCTGGGTTGGCTGGACCTCTCCCACAATAACATCTCCCACCTCAATCTCGGCAGCCTTCCTGCCCTTTCTCTTCTCAACCTCTCCCACAACCCTTTGGGGCAGATGGTCCCTCAGACCTTTGCCTTTAACCTTTATCTCAAGGACCTGGTGCTCCAAGGTGAAATGGTGCAGTTCCTCCTTGGACTGGCAGAGGAACCTCCACCAATCCTGCAGAGCATAAGCTTCTCCTACTCTGTGTCATTGAAGGACAGCACTGTGTGCCGTCTCCTGCAGGGGCTGACTAAGTTGAAGAGATTGATTGTGGACCTAGGTGGATCTGGCGGCCTAAAAAATGTCTCAGTTCTAGCAGCCTGTGCAAAATCTAAAATTCTGCAGCTCAACAACGCCTTCCTAGGGTCCCTTGAAAATGTTCCACTGCTGCTGCCAGCCAATGGACTCATTCGTCTCATCATGAGCAACTGCAACCTACAGAGTATCTCTGCTGACACATGGAAAGGCCTGCAGATACTCGAGGTTTTGCACTTGGACTCGAACAATGAGCTGGACATTCGGAACGACACTTTCATTGCTCTCCAACAGCTCAGGTCGCTCAAACTGGACAGCAGCGGCATCCGTAAGTTGCACCGTGACTGGTTTAAGAATCTCGGCAACCTGACAACTTTGTCCATCATAAAGAACAAGCTGACTGAGCTTCCAGGGGGAGTGTTCAGCCCATTGGGCAATCTGAAAACGCTCATGCTCCGACAGAATGTGCTCAGGGTGATCGGCAAATGGGACTTCTGCAATCTCACTCAGCTCCAAAAGTTAGAGCTGGACTCCAACGACATCTATCACATTGACTACGGTGCCTTCCAGGGGCTAAAGAACCTCAGGTGGCTGGGGATAAATGGGAATCGACTCAAAACTGTCAACCCGTCCATCTTCCAGGGCCTTGGCAGGTTGACTCACTTAGATATGTACAACAACCGGCTACACTTCGGAGAGCAGGACGTCAGCCCATTTGAGGGTCTCTACTCCCTGGTGTTTCTGGAATTCCGCTACCAAGGTCCTGGTGGAGACGGCCTGGGGACCCTGGGACCGTCTTTCTTCCGGGGAACTGAGAACCTGCATAGCCTGGCCCTGGGCTACATGTTCATGGTCACCTTCCACCAGGATGCCTTCACCCCGCTCAGCAACCTGAGCCTCCTGTACATTGCCAGCGTCTCGCTGACCAATGTCAACCTGGGCCGCCTTTTCCGCAACCTCACCTCACTCAGGAAGCTCACACTGTACAAGACAGATCTGGACTCCCTTCCACAAGATCTGCTTCCTCCAGGCAGCCCCTTGGAGTATCTGAATGTGCGGAGCAACCACTTCCACGTCTTGGAGGAATCTCTGCTCGGGAGGCTCGTTCATCTTAGTTACCTGGATGTCAGGGACAACCCTCTGTCCTGCACCTGTCAGAACGCCTGGTTCAAAAACTGGTCACTGAACAGCCCTGACATGGAGGCGGCATATGTATACAGCCTCCACTGTGACAACCTGCCCACCTCACCCTACCTATGGCAGTTTCATGATGGAGACTGTGTCTACAACTCACTGCTCTTCAGCCTCTTCCTGTGTACCTCCCTGGGTGACCTGCTACTCATGGTGCTGGGCCTGGCCTGGCACATGCAGTGGTCCTACATCCGCTACCTCTTCCTGCTGGTCTGCTCCCGTGTTGGCGGCAGAAGGAAGGTAGAAGGGGGTGGCTTCCTCTATGATGCCTTCATCTCCTATAGCTCCCACGATGAAACCTGGGTCATGCAGGAGCTGCTGCCCCACTTGGAAGGACCTGGAGCAGgtggaagaggagaaggaggagggagaggttTCTGCCTGTGCCTACACCACCGCAATTTCCGCCCAGGTGTGGCCATCTTGGAGAATATTGAAGCGGCAGTGTACAGCTCGCGACGAACCCTGTGCGTGGTGAGCAGGGACTTCCTACGAAGCGAGTGGTGCAGTCTGGAGTTCCAGTTGGCCAGCTCCCGATTGCTCTGGGAACGCAGCGATGTCCTGTTGCTGCTTTTCCTGGAGGACATCCCTGACCACTGCCTGTCCCCCTACACCCGCCTGCGCCGGCTGCTCAGGAGCAACACCTACCTGCTGTGGCCCGAGAGGGAGCAGGACAGGGCTGCATTCTGGGTAAGGCTCCGGGATGCGCTGCATGAGGGAGCAGGGCAAGGGGCAGAGGCTGGGGGGTTTGGGGGATTGATGCGATAG

Function

GO: NA

KEGG:

id description
K10168 TLR5; toll-like receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019814 True 2739 mRNA 0.54 1 46841448 46844186

Neighbor

gene id symbol gene type direction distance location
AMCG00019811 NA coding upstream 5235 46823246 ~ 46836213 (+)
AMCG00019812 LOC106590186 coding upstream 69879 46664207 ~ 46771569 (+)
AMCG00019804 NA coding upstream 1582489 45257308 ~ 45258959 (+)
AMCG00019803 NA coding upstream 1604047 45206216 ~ 45237401 (+)
AMCG00019796 rala,LOC103042957,LOC105025131,LOC107565693 coding upstream 1667530 45158209 ~ 45173918 (+)
AMCG00019810 NA coding downstream 5733 46849919 ~ 46861698 (+)
AMCG00019817 NA coding downstream 224810 47068996 ~ 47069748 (+)
AMCG00019821 efr3a,LOC107749108 coding downstream 736106 47580292 ~ 47593154 (+)
AMCG00019830 NA coding downstream 1133107 47977293 ~ 48106133 (+)
AMCG00019831 LOC107555322 coding downstream 1291465 48135651 ~ 48176336 (+)
G37567 NA non-coding upstream 41034 46800116 ~ 46800414 (+)
G37524 NA non-coding upstream 268650 46572301 ~ 46572798 (+)
G37521 NA non-coding upstream 276350 46555190 ~ 46565098 (+)
G37516 NA non-coding upstream 290893 46548815 ~ 46550555 (+)
G37514 NA non-coding upstream 295099 46545171 ~ 46546349 (+)
G37630 NA non-coding downstream 320808 47164994 ~ 47165220 (+)
G37655 NA non-coding downstream 555540 47399726 ~ 47467840 (+)
G37678 NA non-coding downstream 842184 47686370 ~ 47686811 (+)
G37679 NA non-coding downstream 842704 47686890 ~ 47690253 (+)
G37686 NA non-coding downstream 958408 47802594 ~ 47841065 (+)
G37561 LOC100136012 other upstream 49963 46791027 ~ 46791485 (+)
G37372 sugct,LOC107687505 other upstream 1271511 45279455 ~ 45569937 (+)
AMCG00019785 NA other upstream 2397692 44435922 ~ 44443756 (+)
G37105 ssr1 other upstream 2784845 44053074 ~ 44056603 (+)
G36954 NA other upstream 3508135 43330292 ~ 43333313 (+)
AMCG00019820 efr3a other downstream 778582 47622768 ~ 47658001 (+)
G37779 NA other downstream 1606442 48450628 ~ 48451167 (+)
G37962 NA other downstream 2714296 49558482 ~ 49561383 (+)
G37964 NA other downstream 2718708 49562894 ~ 49563214 (+)
G37968 NA other downstream 2727001 49571187 ~ 49571486 (+)

Expression


Co-expression Network