AMCG00019796 (rala,LOC103042957,LOC105025131,LOC107565693)


Basic Information

Item Value
gene id AMCG00019796
gene name rala,LOC103042957,LOC105025131,LOC107565693
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 45158209 ~ 45173918 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019796
TCTGGTCCCATTTGTTATTGTAACTCATCTCTCTCAAGATGGCAGCAAACAAGCCCAAAGGACAGAACTCCCTGGCCCTACACAAGGTGATAATGGTTGGCAGTGGTGGTGTGGGGAAGTCTGCACTGACGCTGCAGTTCATGTACGACGagTTTGTGGAGGACTATGAGCCAACCAAAGCAGACAGCTACAGGAAGAAGGTGGTGCTGGATGGGGAGGATGTGCAGATTGACATCTTGGACACTGCTGGCCAGGAGGATTATGCTGCTATCCGGGACAACTACTTCCGGAGTGGGGAGggctttttgtgtgttttctccaTCACAGAACTTGAGTCATTTGCAGCTACAGCAGACTTCAGagAGCAGATTTTGAGAGTGAAGGAAGATGAAAATGTACCATTTTTGCTGGTGGGCAACAAGTCCGACTTGGATGACAAAAGGCAGGTGTCTGTGGAGGAGGCAAAAACACGAGCAGAACAGTGGAGCGTCAACTATGTGGAAACGTCCGCAAAAACGCGAGCCAATGTGGACAAGGTTTTCTTTGATCTAATGAGAGAGATACGTGCACGGAAAATGGAGGACAGCAAAGAAAAGAAtgggaaaaagaagagaaaaagccTTGCTAAGAGAATTCGGGAGAGATGCTGCATTTTATAATGGGCAGAGCTGGAGACTTCtccaattgttttttgttttttacatttttatttctccctcCTGCCTCTTGAGCAGTTGGTTTATGTGCATCCCTGGCTTGAGATACCCAAAACATCAGTTGAATATTTCTTGATGGAGGGAGATACAAATCGCAAAAAAAACCTACATTAAATGCGCATGAATTTGGAGCTACTTCAGGAAgcaaatgtacatttcataagGTGCCAGGAAaataagcacttttttttttttttttttt

Function

symbol description
rala Enables several functions, including Edg-2 lysophosphatidic acid receptor binding activity; enzyme binding activity; and guanyl ribonucleotide binding activity. Involved in several processes, including actin cytoskeleton reorganization; membrane raft localization; and positive regulation of cellular component organization. Located in several cellular components, including cell surface; cleavage furrow; and focal adhesion. Colocalizes with endocytic vesicle. Biomarker of pancreatic ductal adenocarcinoma.

NR:

description
PREDICTED: ras-related protein Ral-A

GO:

id name namespace
GO:0007265 Ras protein signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07834 RALA; Ras-related protein Ral-A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019796 True 918 mRNA 0.44 4 45158209 45173918

Neighbor

gene id symbol gene type direction distance location
AMCG00019798 NA coding upstream 92921 45064638 ~ 45065288 (+)
AMCG00019797 NA coding upstream 222600 44925531 ~ 44935609 (+)
AMCG00019795 NA coding upstream 380105 44769645 ~ 44778104 (+)
AMCG00019792 NA coding upstream 393405 44740078 ~ 44764804 (+)
AMCG00019790 NA coding upstream 422344 44723767 ~ 44735865 (+)
AMCG00019803 NA coding downstream 32298 45206216 ~ 45237401 (+)
AMCG00019804 NA coding downstream 83390 45257308 ~ 45258959 (+)
AMCG00019812 LOC106590186 coding downstream 1490289 46664207 ~ 46771569 (+)
AMCG00019811 NA coding downstream 1649328 46823246 ~ 46836213 (+)
AMCG00019814 NA coding downstream 1667530 46841448 ~ 46844186 (+)
G37300 NA non-coding upstream 182783 44952385 ~ 44975426 (+)
G37274 NA non-coding upstream 221453 44884806 ~ 44936756 (+)
G37279 NA non-coding upstream 252770 44901806 ~ 44905439 (+)
G37268 cunh7orf25,LOC107722560,LOC105900630 non-coding upstream 303691 44851784 ~ 44854518 (+)
G37231 NA non-coding upstream 376267 44781117 ~ 44781942 (+)
G37373 NA non-coding downstream 110203 45284121 ~ 45284395 (+)
G37440 NA non-coding downstream 645567 45819485 ~ 45822121 (+)
G37455 NA non-coding downstream 806901 45980819 ~ 45981041 (+)
G37486 LOC107575789 non-coding downstream 1191409 46365327 ~ 46393098 (+)
G37514 NA non-coding downstream 1371253 46545171 ~ 46546349 (+)
AMCG00019785 NA other upstream 714453 44435922 ~ 44443756 (+)
G37105 ssr1 other upstream 1101606 44053074 ~ 44056603 (+)
G36954 NA other upstream 1824896 43330292 ~ 43333313 (+)
AMCG00019758 NA other upstream 1887017 43261894 ~ 43271192 (+)
AMCG00019755 NA other upstream 2195551 42960656 ~ 42962658 (+)
G37372 sugct,LOC107687505 other downstream 105537 45279455 ~ 45569937 (+)
G37561 LOC100136012 other downstream 1617109 46791027 ~ 46791485 (+)
AMCG00019820 efr3a other downstream 2448850 47622768 ~ 47658001 (+)
G37779 NA other downstream 3276710 48450628 ~ 48451167 (+)
G37962 NA other downstream 4384564 49558482 ~ 49561383 (+)

Expression


Co-expression Network