AMCG00020043 (nup188,LOC102792001)


Basic Information

Item Value
gene id AMCG00020043
gene name nup188,LOC102792001
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 7766925 ~ 7785992 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020043
ATGGCCAAGGCGATGGTGCACCAGGAGAGTTGGCTCCACACCACCGAGTGGACACAGAGAACAATGGTGAACACCACGAGCGACTCCACGATCACGGGgAGCAGTAGAGAGCTATGGACCATCTTGTTGGGAAGATCTGCACTGAGGGAACCAGCCCAGGTTGAGGCAGAGCTGGACAGAAACTGGGAGAGACTGCTTTCAGGCTTATGTTACTACAAGCCACCTAGTTCATCTTCTGCAGAGAAACTAAAGTCAGAAAAAGATGTTGCCCAGTCAATGAAAGACTTTGGTCTCAGGATCAGTAAAGTATTAGGTCTTGATGAACAGCAAAGTGTCCAGATATTGCAGTGTTACCTGCAAGAAGACTACAGAGGGACCAGGGATGCCTTGAAGTCTGTGTTGCAAGATGAAAGACAGAGCCAAGCCCTGCTGATAAAGATTGCAGACTATTACTATGAGGAGAGGATCTGCTTGCTGCGCTGTGTGCTTTTGCTCCTGACGTACTTCCAGGATGAAAGACATCCGTACAGGGCCGAATATTCTAACTGTGTGAATAAACTGGAGAAAGACCTGGTTTCAAAATACAGAGCGCAGTTTGAAGACCTGTTCAGAGCTGAGGCACCAACATGGGAAACTCATGGAAACCTCATGACGGAGAGGCAGGTGTCCCGCTGGTTCCTGCAGTGTCTTCGGGAGCAGGCCCTGCTGCTGGAGATCATATTTTTGTACTATGCATACTTTGAAATGGCACCCAATGACCTCGTGGCTTTCACCAAGATATTCAAAGAGCAAGGGTTTGGACACAGACAGACCAACAGGCATCTGGTGGACAAGAGTATGGACGCACTCGTTGATCGAATTGGGTACTTCAGTTCTCTTATCCTGGTGGAAGGAATGGACATTGATTTCCTACACAAGTGTGCCATTGAGGATAGGACTGAACAGCATCAGTTTTCAAACACTCCTGAACTCTGCAAGGAAATGGACCAGATGTTGCTCAACTTTGGAGACATTCCCCATCATGCACCTGTGCTGTTGGCGTGGGTGCTGCTGCGCCACACTCTCAGCCCGGACGAGTCCAGCCCAGTGATCAGAAGGATAGGAAACACGTCGCTGCAGCTGGGAGTTTTCCAGTACCTGACCCGCATGCTCCGAGCCCTGGGCAGCAGTGGCAACAATTGCACAGCCAGTACAGCGCGGATGTGTATCTATGGGCTTATCTCCTTTGTCATCACGTCATTTGAGGAAGAAACGTTAGGAAGCCAACAGAAACCAAACGTCGGCCTTGGAATGATTTTGGACAGTGCAGTGGGGATGTTTCCTCAGAAAATTGGTCCTCTTCTTCAGCTTCTTACTGCCTTGTTGTCGGACAAATCCACCGCTAAAAAGGTCTACAGCTTTCTGGATAAGATGTCATTTTACACCGAGCTGTACAAACACAAGCCCAATGACATCCTCTCGCGTGAAGATGAGACGCTGTGGAGGAGACAGGCTCCCAAACTGCTTTATCCACTCGGACTAGGCCAGACGAATCTGCGCATGCCCCTGGGCACGCTGGGTCAGGTGATACCAGGTGAGCAGGGCTACATGGTGCGCTGGGACTACTCCTACAGCTCCTGGACTCTCTTCACCTGTGAGATCGAGATGCTGCTGCACGTTGTCTCCACCGCGGTCAAACCCATCCTGGACCTGGTCCACAAAGTCATCAGCACAGACTGGTCCATTTCGGACTGCCTGCTCCCGATCACATCCCGTATTTACATGCTTCTTCAGCGacTGACATCAGTTATAAACCCCCCAGTCGATGTGATCGCTTCCTGTGTGAATTGCCTCACGGTGTTGGCTGCACGATTGCCTGCGAAGGTTTGGGCAGCCTTACTTCACACAGGCTTTCTGCCCTTTGCCTCAACCCCTCTGACCAACATGGCCCAGTCCATCAGTGCGGAAGGCATGAAGGCGGGGAACTATGGCAACCTCCTCATCCTGATCGAGCAGCCCCAGGGGGAGTATGCCGTGACCATTGCCTTCCTCCGCCTGGTCACCACGCTGGTCAAGgGGCAGTTGGGCAGCACTCAAAACAAAGGCCTTATTCCCTGTGTCCTGTTAGTTCTGAAAGAGATGTTACCCACTTATCACAAGTGGCGCTACAACACGTATGGTGTGCGAGAGAGGATCGGCTGCCTGATTCTAGAGCTGATTCACGCCATTTTAAATCTGAGTCCGGAAGGGGAATCCCAAGGAAGtgcaccAAGTTTGCAGTCCCTCTGTATATACAGCCTGGCTAATACAGAAGCAGGGCAAGCTGTGGTCAATATCATGGGCATTGGAGTGGATACCATTGATGTTGTTATGGCAGCCCAGCCCAGCAGCGGGGGGTCGGAGGGTCCGGGGCAGATGCTCATTCAGACTGTGAAGCTGGCCTTTTCAGTCACTAACAATGTCATCCGGCTTAAGCCTCCATCCGATGTCGTCTCTCCCTTGGAGCAGGCCTTGACGCAGCACGGTGGCCATGGGAATAACCTGATTATCGTCCTGGCAAAGTACATCTACCACAAACACGACCCAGCATTGCCACGTCTGGCTATCCAGCTGCTGAAAAGATTGGCAACGGTGGCGCCCATGTCGGTGTACGCCTGTCTGGGCAGCGATGCGGCTGCGATACGTGATGCCTTCCTGACGCGCCTGCAGAGCAAGACCGAGGACATGAGGATCAAAGTCATGATTCTGGAATTCCTGACTGTTGCTGTTGAAACCCAGCCGGGTCTCATAGAGCTCTTTCTCAACCTGGAAGTGAAGAACGGCGCAGAAGGGTCAAAGGAGTTTCTGCTGGGGGAGTGGAGCTGCCTGCAGGTGGTGCTGGATCTCATTGACTCCCGGCAGCAGGGAAAGTACTGGTGCCCACCCCTGCTCCACCGTTCCGCCCTGGCCTTCCTCCACGCCCTCTGGCAGGACCGCCGAGACAGCGCCATCTCCGTGCTGCGCACCAAGGAAAATTTTTGGGAGAATTTGACAACACCTCTTTTTGGTACACTCCCCTCTTCAGAGACAACTGAGcctTGTGTCCTTGAAACATGTGCCTTGGTCATGAAAATAATTTGTCTAGAAATCTACTATGTAGTCAGGGGTTCTCTGGAGCAGTCACTGAAAGACACCCTGAAGAAGTTTGCCAGTAGCAAGCGCTATGAGTACTGGTCAGGCTATGTGAAGTCCCTGGTTTGCCACATGGCTGAAACAGAGGAGGACGGGAGTCGCACATTCACCGAGTGCCAAATGTTAGTGTCTGCCTGGAGGATGCTACTCATCATCTCCACCAGTCATTCTGATGTAATGCATTTGACAGAGGATAATACCAGACTGCAGCTGTTCATGGATGTCTTAGAGGGGACCAAAGCTGCCTTGTTGGTTCCCATGTCTGTGCCCTGCCTGCGTCTGGGATCGATGCTGGCCACGCTGCTTCTCATCCTGCTCAAACAGTGGAAGAGTGTTATTGGATTGGCTCCCGAAATCCTCCAGCCTCTGGCCTTGATATTGGAAAGCATCTTGCAAGCGGACCAGCAACTTATGGACAGAGCCAAGGCCAAAGTGTTTTCTGCCCTTATTTCTGTACTTCAGATCCAGGGGCTTAATGGCAGTCAGCTGCCCCAGCTCCCACAGCTCCTGCTGTGCATTTGTGAGACCATCCAGGAGGAGGCGCTGGCCCTGATGGACAGCACGCGCCACACCGCCCTGACCGGGGACAGCACGCCCGAGGACAAAGACAGCATGGAGACAGACGCGGCTCCCAAGGCCCTGCACAAGGACCAGAGGGATGGGGTGTGCGTCCTGGCTCTACACCTGGCCAAGGAGCTGTGTAAACTGGATGCGGACGGAGATCACTGGCTGCAGGTGATGCGCAAGATCCCTGTGCTACCCTCCATACTGAGCGCCCTGGAGCTGAGCCTGCGGGGTGCCGAAGCGGTGGCGGGGGCTGGAGTCATTCAGAGTACCTGCCTGCCTCTGCTCAGCGTCTATGAAATCTCCAGCAATGGAGCCACACAGGGCTCTGGTTTCTCCCGGAAGTCGCAGGACGCCCCCTCCTGGCCGGGGGTGTATCGCCTTTCCATGTCCCTGATGGAGAGCCTGCTCAAGACCCTGCGCTACAACTTCCTTAACGACGCGCTGGATTTCGTAGGTGTCCATCAAGAGCGGATACTGCAGTGCTTGAACGCCGTGCGGACAGTGCAAAGTTTGGCGTGCCTCGACGAAGCCGATCACACAGTGGGCTTTCTGCTGCAGCTCTCGAATTTCTGCAAAGAGTGGCAGTTCCACCTGCCCCAGCTGCTGCGGGACGTCCAGGTCAATTTATGTTACCTTTGCCAAACATGTACTTACCTTCTGCACAGCAAGAAAATGCTCCATCACTACCTCCAGGCCAAGAATGGAGATGCGGTTCCCCCGGGCCCCCGGCCTCAGCGTGCCCCACAGACCCCCTCCAAGCAGCCAAGCTCGGAGCGAGAGGAAGCCGAGCAGAGGGCTCTCCTGGCCGTGCAGTGCAGCCTCCTCAAGATCCTCAGCAAGACGCTGGCGGCTCTGCGCCACTTCACTCCGGACTTCTGCCAGATCCTCCTCGACCAGTCTCTGGACCTGGCTGAATACAATATTCTATTTGTCCTGAGCTTCAACACACCTGCGTTTGACTCGGACGTGGCACCCTCGTTTGGAACCCTGCTGGCCACCATTAATGTGGCGCTGAGCATGCTGGGAGAGGttgagaagaagaaagaacCCGCGTCCCTGAGTGTGGCGTCCTTCGCGTCCTCCGAGGAAACGCAAGCTCTCAAaTCACTCCTGATGTTTAGCATGGAGAACTGTTTTTACGTGTTGATCTCTCAAGCGGTGCGGTACCTGAAGGATCCCACAGTCCATAATCGAGACAAGCAGAGGATGAAGCAAGAACTCAGCTCAGAACTGAGCACCCTGCTGTCCACTCTGTCCCGTTACTTCAGGCGCGGCTCCCCCTCCTCACCAGCGGCAGGCCtgcacccctccccccaaacCAAGCCCCCCACTCCGGGGACCAAGCTGGGCCTGGAAGGGCAGGAGCCAATCGTCCAGCTGGTCCAGGCCTTCGTCAGGCACGTCCAGAGATAGACTCCGCCTCCCGACCCGTGGTGGCTGCTTCGATGTGTAATTCTTTCCTCTACCTTTTCTCAGGAAATGAGATACGACATCTATATCCATCATCACACAATCTGTACGGTACTACAGGAAGTGCAAGACTGGTAGTAAACATGTTGACATTtaacacaacaaatgcattattatttttataagtaTAAAACTGAACCGAAAACCTAAATCACATTTTGGACCTGCAAACAAGAACTTTTTATAAATGATAATTTTGCTTAACTTGGTAAACAAAGGAGAGGAAAGCAGTTGGACAGTTACcttatttattaacaaattcTTACCTGGATATTAGCTGTCTGCCTTCTGCTGCCTCTGCTTGAGGAGGAAGATTCAAAATAAGCAAAATCAGTTTATTCTTTGTATACCAAGTTCTTCTAAATAGTCAGATATACTAAATGTGTTCTCAACTAAGTGCTGAGTTGtttacagatacaaaataagatgcattcagtccatctttttttttttttttctttcccagagAGATTTTTATTTGTTCCATCACTTGAAGTAACAGTAAAACTAAAATTACATGTCGAGCATATCAGTGAATGCACCCTCCTGCAACAAGATCCCTTTTTAAATCATGGCATTTTCTAGGCAaagatatcaaaataaattggtAATGACACCCAACAAAAACGaaccaaatgtatttgtgaaaatgtgcagCTGTGCTGTCATGTCAACagtatttttataaaaagatGTATTTCTACTCTGGATAACTGTTGGGAAGCATGCAAGGGAGAATGACAGTAGACTTTGTATGTACAAACTAAACAATTTGGTAGACTTGTGTAAGCCAGTGATACTGTTCCATACTCAGGGCTTGTGAAACAGTTTGTTGTATGTGGTGTTTGTGACATCTTGAAGAATcctcatgaaaatgacaagcAGTCTTTTTGGTTCAAAACTGTTTATCTGGAAGTCTTGGATCGTCCTGCAGTGCTGCTCACACTTATTTATATGAactcctttgttttttgtggtacTTTTGCCAAAACCTAACCCTCTAACATTGTggacaaatgcatttaaattataccAAAAAGTATGTGAATCTTTCACTTTCTCCTAAAACGATTTGTATCTtcctcatttttgttttaatagaaaGCCTTCCTCTGTTTAAATCCAGTACATATAAATAGTGCCCTTAATACCGTAAAGATGTGTAGAATAATCCTTATGAGATGGTTCCAAAAGTAACGTATGTCAAGATGTGCCACAGTGGCAATGAAACCAGATTGCTGTAGTGCATTGCAGTGAATGTGTTGTCATATTGTGAATTGACACAGTttgggaaatattttaaaagttaaaatctACACTCAAGTCGGTTGCATTTAAATATCTTCTCCTTAAAGGAGCAGgtgaaaatattttgatatagCTAATCAAATCGGAGACGTCGGGGAGATGTCAGTGGTTTGGAAGTTCTACCCCGACTGTACAACATACTGTCAAGACAAGTCTGTCTGAATGGGCTTTCAGACACAACTGACACGATAAAATGGTGCCCAAGTGGAGCGGAGGTTTTATCGGTGCTTGCATTTATAGTAGCTTATTGAATTCTAGCTTTATGCTGGCATTGCTGCCTCTTCAATGTGTGATATGGACCATCATATCTGCGGATGCTCTCGGTTAAAAACCCAAGCCATACTTGACATCTCGGTGCCAATATCAGCCCTTGCATATCTCTTGTATATTCACACTTGTGGCTGGTTTTAATGCCTATCGACCACCTAGTGTTTTAGGTAACATTTTAGTTGAGGTGGTTTCagagtatgtatttaaatggttaATAACATGACATTTAGCAGTAGAGTACTGTGTTAATAAGTGGTTTATAGTCATGCTTGAATGCATGTTATTAACCATATGTATGTCATCCGcatataaatgtgctgttagATGTAACCAAGAGATATAAGCATGTTCATGAAACattattaattgtaaaatggCAACCCCTTTAACTGAAgcttgttttataaatgtatttttttgtaccATCATCATTTCTGTACACCAAGATGATGTCAtttttgcttattgtatgtTTTACGCACCATTGGAGCTCTTAATGTTTTGGGAGAATGCCGTTGTTTGCTTCTGAATGACAAGTACAGTGTGCTCAATGtcagatgtatgtatttgtgtgggAGTGCGTTTTATATGGGTAtgcaattgaaaagaaaaaaagtactGTATACATTGGATGACAAAGAAACTGCCGACATTTGTACCTGAAAATTCAACTTTTTGTCTTCTTATAATTTCTATTTATACAACTATTAAAAACTTTTGTAGAACA

Function

symbol description
nup188 Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore inner ring. Orthologous to human NUP188 (nucleoporin 188).

NR:

description
PREDICTED: nucleoporin NUP188 homolog

GO: NA

KEGG:

id description
K14311 NUP188; nuclear pore complex protein Nup188

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020043 True 7492 mRNA 0.48 43 7766925 7785992

Neighbor

gene id symbol gene type direction distance location
AMCG00020038 NA coding downstream 197320 7537932 ~ 7569605 (-)
AMCG00020039 ntng2a,LOC103151468,LOC107664998,LOC104943762 coding downstream 251234 7507361 ~ 7515691 (-)
AMCG00020033 NA coding downstream 313850 7445481 ~ 7453075 (-)
AMCG00020034 NA coding downstream 322431 7429012 ~ 7444494 (-)
AMCG00020035 NA coding downstream 381163 7364054 ~ 7385762 (-)
AMCG00020051 NA coding upstream 6306 7792298 ~ 7797939 (-)
AMCG00020050 lrrc8a,LOC104923672 coding upstream 13930 7799922 ~ 7810406 (-)
AMCG00020054 vav2 coding upstream 95828 7881820 ~ 7927867 (-)
AMCG00020055 NA coding upstream 267827 8053819 ~ 8071930 (-)
AMCG00020057 rxra coding upstream 304313 8090305 ~ 8116036 (-)
G60540 NA non-coding downstream 194094 7572597 ~ 7572831 (-)
G60387 NA non-coding downstream 966175 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 1071149 6679178 ~ 6695776 (-)
G60356 NA non-coding downstream 1277548 6487309 ~ 6489377 (-)
G60345 NA non-coding downstream 1322192 6443275 ~ 6444733 (-)
G60610 NA non-coding upstream 67009 7853001 ~ 7854373 (-)
G60656 NA non-coding upstream 258617 8044609 ~ 8047241 (-)
G60723 NA non-coding upstream 1007976 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 1012972 8798964 ~ 8799167 (-)
G60730 NA non-coding upstream 1021028 8807020 ~ 8809893 (-)
G60516 NA other downstream 204333 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 1295491 6467271 ~ 6471434 (-)
G60348 NA other downstream 1300339 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 1305497 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 1594451 6159577 ~ 6172474 (-)
AMCG00020066 fam69b,fa69b other upstream 1026793 8812785 ~ 8828109 (-)
G60746 NA other upstream 1053219 8839211 ~ 8839945 (-)
G61170 NA other upstream 2969476 10755468 ~ 10756419 (-)
G61269 NA other upstream 3909699 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 4215708 12001700 ~ 12052211 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_018616 nup188 coding NC_007132.7 CM002905.2 4540127 ~ 4606386 (+)
grasscarp (Ctenopharyngodon idella) CI01000187_00524240_00540701 NUP188 coding CI01000187 null 523860 ~ 540701 (-)