AMCG00020055


Basic Information

Item Value
gene id AMCG00020055
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8053819 ~ 8071930 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020055
CAGGGGACTCCCAGTGGCTCATCTATTATGCTGCTTTGCTGAAATAAAAGAAGAGCTGCTAGGACGACTGCAAGCAAAACGCTGTTGGAGCCGCTGAGGGGaaaaAGGTCACGAGGTCTGGCCCTGAGATGGGATGTGGGTCCCCTTTGGGGAGTAAAGAGCACAAAGAGGAATACAGAGCCCATTGAAGACACGGGAAATCACAGACAAAGAGAGCGACAGCAATCCCCGGAAGGATGTCGGCCGTCACCTCAGCCATCCAGGCTCCGCAGTCCGGTGTCAACCCCCCACCACCTGAGTTCACGAACCCCAACAAGCCGGGCCGGAAGACCAATCAGCTGCAGTACATGCAGAACGTGGTGGTGAAGACGCTGTGGAAGCATCAGTTTGCTTGGCCTTTTTACCAGCCTGTGGATGCCATTAAGTTAAGCCTCCCGGATTATCATAAAATAATCAAGAATCCTATGGATATGGGGACTATTAAGAAGAGACTGGAGAACAACTACTACTGGAGTGCCAGTGAATGTATGCAAGACTTCAACACCATGTTTACTAACTGTTACATTTATAACAAGCCCACTGATGACATTGTCCTGATGGCTCAAGCACTAGAGAAGATCTTTCTCCAGAAAGTGGCCCAGATACCACAGGAAGAAGTGGAGCTCCTTCCACCAGCTCCCAAGGGCAAAGGTCGGAAGCCAGGAGGTGCACCTAGCACTGGAAgccagcaggtggcagcagTGTCTTCAGTCTCGCCGCCTGCGTCTTTCCCCAACACCTCTCCCACTGTCTCACAGACACCAGTTATTGCAGCAACTCCAGTGCCAACAATAACCCCCAACGTCGCGCCTGTTCAGCCACCACCACCCCCTGCGGCTCCCATGATGCCCGTTGGTCCTCCAGCACAGCCAGTTGTCAAAAAGAAGGGGGTGAAGCGGAAAGCAGACACCACGACGCCCACCACCTCGGCCATCACCGCCAGCCGCGCAGAGTCGCCCACCCCACTGCTGGATCCCAAGCAGGCGAAGGTGGTCTCGCGGAGAGAGAGCACGGGCCGGCCCATCAAGCCCCCCAAGAAGGACCTGGAGGACGGGGAGGTGCCCCAGCATGCGGGCAAGAAGGGCAAGCTGAACGAGCACCTAAAGTACTGCGACAGCATCCTGAAGGAGATGCTCTCCAAAAAGCATGCTGCCTACGCCTGGCCCTTCTACAAACCGGTGGATGCCGAAGCCCTAGAGCTGCACGACTACCACGAAATCATCAAGCACCCTATGGACCTCAGTACCGTCAAAAAAAAGATGGATGGCCGGGATTACCAGGACGCCCAGGGTTTCGCAGCAGACATCCGGttaatgttctcaaattgtTACAAGTACAACCCACCAGATCACGAGGTCGTAGCCATGGCAAGGAAACTGCAGGATGTTTTCGAGATGCGCTTCGCCAAGATGCCCGATGAGCCGGCCGAGCCGACGCCCCCCGCCGCGCCGCCGGCCGCCCCCGTGGTCAGCAAGAGCACGGAGAGCAGCGAGAGTAGTGGGGACACCTCCTCCGACTCCGACAGCTCCGACTCCGAGGAGGAGCGGGCCACCCGGCTCGCCGAGCTGCAGGAACAGCTGAAGGCAGTCCACGAGCAGCTGGCCGCCCTCTCCCAAGCGCCGGTAAGTAAaccaaagaagaagaaggagaaggagaaagagaaaaagaagaaagacaagGAGAAGGAcaaggaaaaacacaacaaggGGAAGGTGGAAGAGGAGAAGAAGGCCAAGTCGACACAGCCGGCGAAGCAGGCCCAGCAGAAGAAGGCGCCGACCAAGAAGGCCAACAGCACAACTACAGCAACTAGGCAACCGAAGAAGGGGGCTAAGCCACCAGCTGCCACCTACGAGTCTGACGAGGAGGAGGACTCGTTGCCCATGACATATGACGAGAAGAGGCAGCTCAGCCTCGACATCAACCGGCTGCCGGGGGAGAAGCTGGGCCGCGTGGTGCACATCATCCAGTCCCGAGAGCCCTCTCTCCGGGACTCCAACCCGGACGAGATCGAGATCGACTTTGAGACGCTCAAACCTTCCACACTCCGCGAGCTTGAGCGATACGTCAAGTCTTGTTTACAGAAAAAGCAGAGGAAACCTTTACCTGGCACAGGGAAAAAAAGTGCGAAGTCTAAGGAGGAACTCGCtcaggaaaagaagaaagagtTAGAAAAGAGGCTGCAGGACGTGAGCGGACAgctgaacaacaacaagaaaccGCCCAAAAAAGGTACCTGTGTTTCAGGGTTGAACTCGGTCTGA

Function

GO: NA

KEGG:

id description
K11721 BRD3; bromodomain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020055 True 2303 mRNA 0.56 11 8053819 8071930

Neighbor

gene id symbol gene type direction distance location
AMCG00020054 vav2 coding downstream 125952 7881820 ~ 7927867 (-)
AMCG00020050 lrrc8a,LOC104923672 coding downstream 243413 7799922 ~ 7810406 (-)
AMCG00020051 NA coding downstream 255880 7792298 ~ 7797939 (-)
AMCG00020043 nup188,LOC102792001 coding downstream 267827 7766925 ~ 7785992 (-)
AMCG00020038 NA coding downstream 484214 7537932 ~ 7569605 (-)
AMCG00020057 rxra coding upstream 18375 8090305 ~ 8116036 (-)
AMCG00020058 NA coding upstream 62251 8134181 ~ 8134951 (-)
AMCG00020062 NA coding upstream 230333 8302263 ~ 8305952 (-)
AMCG00020061 NA coding upstream 241883 8313813 ~ 8326375 (-)
AMCG00020067 NA coding upstream 782886 8854816 ~ 8876263 (-)
G60656 NA non-coding downstream 6578 8044609 ~ 8047241 (-)
G60610 NA non-coding downstream 199446 7853001 ~ 7854373 (-)
G60540 NA non-coding downstream 480988 7572597 ~ 7572831 (-)
G60387 NA non-coding downstream 1253069 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 1358043 6679178 ~ 6695776 (-)
G60723 NA non-coding upstream 722038 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 727034 8798964 ~ 8799167 (-)
G60730 NA non-coding upstream 735090 8807020 ~ 8809893 (-)
G60774 NA non-coding upstream 908343 8980273 ~ 9017406 (-)
G60833 NA non-coding upstream 1085997 9157927 ~ 9160733 (-)
G60516 NA other downstream 491227 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 1582385 6467271 ~ 6471434 (-)
G60348 NA other downstream 1587233 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 1592391 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 1881345 6159577 ~ 6172474 (-)
AMCG00020066 fam69b,fa69b other upstream 740855 8812785 ~ 8828109 (-)
G60746 NA other upstream 767281 8839211 ~ 8839945 (-)
G61170 NA other upstream 2683538 10755468 ~ 10756419 (-)
G61269 NA other upstream 3623761 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 3929770 12001700 ~ 12052211 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000006_08749304_08751622 BRD3A coding CI01000006 null 8748737 ~ 8753683 (-)