AMCG00020818


Basic Information

Item Value
gene id AMCG00020818
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34420834 ~ 34426849 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020818
GCCGGCGCTGTGCGGGGCGATGGCGTCCTACTTCGACGAGCACGACTGCGAGCCCACCAACCCGGAAGAGCAGTCTCTGATGCAGGGCATGGATATTGACCTGGCCATAGGCCCCGACGATGTCTCGGAGTGGGACCAGCGCCTGCCCCCCCCGGCCGCCAAACGGATAATCCAGAACCTGTCTTTGGTCACCATCACCCCCGCGCAGGCAGACAAGGGACTGAAGTGCCCAGTGTGTCTGCTGGAGTTTGAGGAGGATGAGACGGTAAGGAAGATGCCCTGTGAGCACCTCTTCCACTCTGGCTGCATCCTGCCCTGGCTGGGCAAGACGAACTCCTGCCCTCTGTGCCGCCTCGAGCTGCCCACAGACAACCAGGGATACGAGGAGTTCAAGAAGGAAAAGGAGAGGAGGAAACAGCGAGAGCACAGGCTGGAGAATCTGCATGGAGCCATGTACACATGAGGACTGCCctgcactgaaacacacaccTCTCTGACTGAGGCACTTCCCTACCAACAAGAATAAATTACTGCTGGCTGTTTTAAAGCAAGACTAGTGTTCAGCTCCAGACAGAGGgatttacaaatgtgtgtgtgtgtgtgtgtgtgtagggtaGCATTTATAGCCAGTCCAGGAACTTTAATGTCATACCTTGTTTTAAGACTGTTTAAAGGTTTAAAGTTCAGGTTACTGATCAGTTTTTGTCCGTTTCATATCACTGGATGATATGCCAGGGACCTGTTTTTATAAGATTAAGTGGATAATGTGTGCAGGTATCAATAGTATTCAAAACACCTGACACGCTTCTCTCGCACTCCAAAGAATGTAAACATGGCATTTGATTTAGTTGTATAATCAATGTAGATTAATTTCTGTACTTTAGACTGGACTGTACCCTCGGTTATCTATCTGTCCTCAAGGCCTCTGAATGCTGTGTGCTTGGCTGCCCACTGAACTCTGACCCTGGGGGTTAATCTGTGATGCATTCCACATTCACAGCCTGGATCACAACCGacagactgtactgtaccaACTACACTCTTAGACCCCGTCCAAATGGGAAAGTACACCGATTCTCTCAAGGAAATTTCATAATTCAAAAGGAACTGAGAAAACCGAGTGACGAAAATGAAGTGAGGGTTTTGATCCATTCCTTCTCCCGCCTGTTGGGAAGTAACCATGCTTTGATTTAAAAGGGTTTTAACTcctactgtaaaaataaatattaaaatgtaatgcagtcaAAGCAGAATGTCTTCTTGTTTGaggttttttaattttgtaaataaaatatactccTTCGCA

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K22378 RNF181; E3 ubiquitin-protein ligase RNF181

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020818 True 1306 mRNA 0.47 5 34420834 34426849

Neighbor

gene id symbol gene type direction distance location
AMCG00020816 NA coding upstream 2167 34413614 ~ 34418667 (+)
AMCG00020817 NA coding upstream 18710 34393701 ~ 34402124 (+)
AMCG00020814 NA coding upstream 63697 34342691 ~ 34357137 (+)
AMCG00020808 mthfd2,LOC106580352,LOC107728122 coding upstream 182554 34233825 ~ 34238280 (+)
AMCG00020809 NA coding upstream 217919 34198498 ~ 34202915 (+)
AMCG00020823 NA coding downstream 18430 34445279 ~ 34450197 (+)
AMCG00020825 NA coding downstream 23679 34450528 ~ 34451727 (+)
AMCG00020824 NA coding downstream 25362 34452211 ~ 34456901 (+)
AMCG00020819 LOC107597267,LOC107654641,LOC107741205,LOC105890027,LOC107663217 coding downstream 35617 34462466 ~ 34475645 (+)
AMCG00020827 NA coding downstream 54530 34481379 ~ 34493390 (+)
G65877 NA non-coding upstream 153734 34239889 ~ 34267100 (+)
G65873 NA non-coding upstream 158905 34222346 ~ 34261929 (+)
G65831 NA non-coding upstream 358239 34062152 ~ 34062595 (+)
G65829 NA non-coding upstream 369797 34049994 ~ 34051037 (+)
G65670 NA non-coding upstream 1538716 32879099 ~ 32882118 (+)
G65954 NA non-coding downstream 85808 34512657 ~ 34512879 (+)
G65956 NA non-coding downstream 87197 34514046 ~ 34515896 (+)
G65962 NA non-coding downstream 100018 34526867 ~ 34527075 (+)
G65978 NA non-coding downstream 250062 34676911 ~ 34732379 (+)
G65994 NA non-coding downstream 320044 34746893 ~ 34748114 (+)
AMCG00020820 NA other upstream 9214 34404534 ~ 34411620 (+)
G65830 tet3,LOC106906237 other upstream 361369 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 460252 33954806 ~ 33960582 (+)
G65705 NA other upstream 1312408 33107873 ~ 33108426 (+)
G65691 NA other upstream 1431389 32946731 ~ 32989445 (+)
G66008 NA other downstream 357363 34784212 ~ 34787474 (+)
G66060 NA other downstream 540995 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 720754 35147603 ~ 35149418 (+)
G66149 NA other downstream 736964 35163813 ~ 35164985 (+)
AMCG00020874 NA other downstream 1320307 35747156 ~ 35750446 (+)

Expression


Co-expression Network