G65873


Basic Information

Item Value
gene id G65873
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 34222346 ~ 34261929 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82357
tgttttgtttctaaaactccctcaaagtttatttaaatttacagcAAGCTATTGTGcacaaaaatactgtatttcagtCAAAAAGGatttatcatttgtttgttttctaaggcACAGATCTCATTTatggaaaaatgtatagaaaataaaatagaatttaaaacagaagaatctacagtgaataaaaaaaaggaaggacCACAAGGATCTACATATTCCACACAAAAAGTATTTaccctcaaaaacaaaaaaaagatgcatgaactttcaaaataaaacaagaaaatgttatacattataAGCTTAGgcattgaaaaaaaatctgcttttacATTAATTGGTCCAAAAGAAGTTCACATATTttcctgaataaaaaaaaaaaaaaatcccacttATCAATTTTAACCATAACACGTAGAAATGAAAAAGTGGCTACTCCtcggattaaaaaaaaaagaaaaaacggtaCTCACAAAGAATttagtaacattaaaaaaataaaaataaccaaaacaatgtaaacCAGAGAAACAGAACCAGTCTTGTATATCTTGTATTTGACTCCCAGCAGGAATTTCTTTCAAAAGGCATCTTGTGGCACTGCCATAGATTAGACAGCAGGTGTAGGTCGAGTCTGACAGTAGCTCCTGTAGCTTATCCACAATACAGCATGAAAATTATTTCTAAAAACGGATTCCTGTGTCTGAATCCAGCCAAGTTTCTTCACCAACTCGGACCTTCTGAGAAAGGCCAAGACAAAGAGAAACTCCGGGATCAGATATGACACCAGTTAGACCAGCAGTCATTCAGGGAGGCAAGACCCCAACCGTATTTTGCACTGGATTCACAAAGAGCCTGCGATCAAACTGAGCCACACCTCTGCCCACTTCCACTgaacaaaagcaatacaaatatattcctaataagacaaaacaacaaaaacaacacgtTGAGCTTATCCCCATGCAGAGAGGCTCGGATCTCGGGGACCCCCTGTGTATATAAACCGGCAGCCATGACAGggcctgggggtgggggtcagttcattttttccccacttccCTCTTTCAGGCCCATTCCCAGTTCCAGTTCTTGCCCTGGACATAACAGGCCCGGATGGAACGGGAATCGAATTGAAAAAGGAATTGCAAACTGAATTTTGATGGAAAGACAGAGTTGACCCAGACCCAACAGTAAGCAACACTGTTAGTAAGCAGCCTGAGGTCTGGGGCAGATGACACCAGCCtagaccacaacacaacacagagctaATATACCCAGCGCTGGCTGCCGTAGGAAAAACTCATTCCTTACAAGCTGTGTATACTGCTGGTATTTTTCTGAAACCCCTTAAAAACATACCactatggaaattaaaaaagccACATTAGAAAACAAGAGGCAGGGTCTCTAATAATAACCCTGATACAGAGGCAGAGTCACATTTTAAGCAGTCTGCAGCCTGGTCTTTGCAGGggtttcattaataataataataataataataataataataataataataataataatgaaaggtaTTTCAGAACTGCATGAAACGATTATTCCAATTCAGGTTTCCTGGGAGTATACAACAATAAATACTATCAGGGACTTGAATTTCCCTGAGGAAGTCCAATTTAGCCATTAAGTGGGATtaaccatttttttgtttgtttataatgtaaacagttgcTGCATGCGAACAAGACcagtatttgaaatgtaaaagctTGGGTCAGGTGATGTTCTCGGCATCTCGCATTGGTACAGCAGTCCGATTTCtcctcattcattcattcatttaaaatcagtCCCGTCCTTCAATCGGAAGCACCGGACTCCTCCCAGAAAACCCTGGAGATCATACAATACGTTTCACGCAGCTTCCCCTTGTGCAGTTACTTAAGACAGAAAAGActataaacaaaattaagtcGTTTATAAACACCCGAGGAATATCTGCAAAACAGTTTCCATTATTTCAGACGAACCTGaatgtcacttttttttcttccccaaacTCTGCGTCTCTGCGGTTGTTTATAAGCACTTCAGAAAGCAAAGTCAACCCTCCAGCTAcagtttatattaataatttgtttcaaGTATCAGTTCTCCTTTTTGTATCACTTTATCAAAGAGGCACTGTAGCCAAGAGGTTCACCTTCAGAAACAAGGATTATAAATGTCATAAACACTGAATTGTTCaggatatatatagatatataaagtGAATTCTACTCTATTCCTGTTCCAAACCTGTAAAACAGCTTTTCAAGAGAACaatgataattaaatatacCCTCCTTCATTTGCATTCAATAACTGCCATCTTTCAATCTCTCAGATCTTTTCAACCTttcaatgcattacaaaaactCTGAATTAAGTGGATAATCTAATTAAAATCTTTAGTTTTAGACAAAGAGCACTGTTAGGTTTGGATACTCTGAAATACGCTAGCAAAGCACCGTCAAAACAATTTGCCTCCTCTGTTCCATGTAACAGGACGGAGGGTAAACCTCTGAGCGATGAAGCAAACGGAAGCGTAGTTTCACTTACAACcgaaacgtttttttttttttgttttttttcttgatttttttattttctcctacagaCAGCCCTCTTAACCCTAATATGCCAGTTGGCTATCCCAGCAGCTTTGGAGGCGAGCTGCTGCGAGATTAAGGCCCTCCGCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82357 True 2706 lncRNA 0.38 2 34222346 34261929

Neighbor

gene id symbol gene type direction distance location
AMCG00020809 NA coding upstream 19431 34198498 ~ 34202915 (+)
AMCG00020806 NA coding upstream 66835 34151480 ~ 34155511 (+)
AMCG00020800 NA coding upstream 182083 34033190 ~ 34040263 (+)
AMCG00020799 NA coding upstream 202387 34015287 ~ 34019959 (+)
AMCG00020802 NA coding upstream 215543 33999477 ~ 34006803 (+)
AMCG00020814 NA coding downstream 80762 34342691 ~ 34357137 (+)
AMCG00020817 NA coding downstream 131772 34393701 ~ 34402124 (+)
AMCG00020816 NA coding downstream 151685 34413614 ~ 34418667 (+)
AMCG00020818 NA coding downstream 158905 34420834 ~ 34426849 (+)
AMCG00020823 NA coding downstream 183350 34445279 ~ 34450197 (+)
G65831 NA non-coding upstream 159751 34062152 ~ 34062595 (+)
G65829 NA non-coding upstream 171309 34049994 ~ 34051037 (+)
G65670 NA non-coding upstream 1340228 32879099 ~ 32882118 (+)
G65594 NA non-coding upstream 1536026 32629723 ~ 32686320 (+)
G65579 NA non-coding upstream 1636632 32563430 ~ 32585714 (+)
G65891 NA non-coding downstream 154666 34416595 ~ 34480123 (+)
G65954 NA non-coding downstream 250728 34512657 ~ 34512879 (+)
G65956 NA non-coding downstream 252117 34514046 ~ 34515896 (+)
G65962 NA non-coding downstream 264938 34526867 ~ 34527075 (+)
G65978 NA non-coding downstream 414982 34676911 ~ 34732379 (+)
G65830 tet3,LOC106906237 other upstream 162881 34059111 ~ 34059465 (+)
AMCG00020796 tmem230a,LOC106565272,LOC106579885 other upstream 261764 33954806 ~ 33960582 (+)
G65705 NA other upstream 1113920 33107873 ~ 33108426 (+)
G65691 NA other upstream 1232901 32946731 ~ 32989445 (+)
AMCG00020783 dock5,LOC106585561 other upstream 1477611 32707933 ~ 32744735 (+)
AMCG00020820 NA other downstream 142605 34404534 ~ 34411620 (+)
G66008 NA other downstream 522283 34784212 ~ 34787474 (+)
G66060 NA other downstream 705915 34967844 ~ 35008322 (+)
AMCG00020855 NA other downstream 885674 35147603 ~ 35149418 (+)
G66149 NA other downstream 901884 35163813 ~ 35164985 (+)

Expression


Co-expression Network