AMCG00020883 (LOC106579887,LOC106585549)


Basic Information

Item Value
gene id AMCG00020883
gene name LOC106579887,LOC106585549
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35820156 ~ 35827073 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020883
acattttgcacaCATTTCTAATTCGGATTCATCTTGTTATAAACCTGTACACATTGTTTGCTTGGTTATGTGTTAGGGTGCCGGGTGGATCAGATTACACAATTCTGTGCGCAATTTGTGTCCGTTTTTAGCTGCTACTTCAGGGCGTCTAGTGGCAGTTGTTTAGCGGATAAAGTCACTTTACACAGTCCTGAGCCCAGGAAGATGAAAGACACACTGAAACTGCTCACTAAATTCAGCGGCCATCCGGACTCCCGCTGCTGGTTCGTGGCGTGGGATCCTAAGGGTACCTTGCTGGCCTCGTCCGGGGGAGACCGGGCCATCCGGATATGGGGCCGAGAAGGTGACACCTGGGTGTGCAAGTCGGTTCTGGAGGACGGACACCAGCGGACGGTGCGGAAAGTGGCGTGGTCGCCGTGCGGGACCTACCTTGCCTCGGCCAGCTTCGACGCAACCACGTGTATATGGCGGAAGAAGGAAGACGAATTCGAGtgcctGACCACACTGGAGGGCCACGAGAACGAGGTGAAGTGTGTGGCCTGGGCGCCATCCGGCAACCTGCTGGCCACCTGCAGCCGAGACAAGAGCGTGTGGGTCTGGGAAGtggaCGAGGAGGACGAGTACGaatgtgtcagcgtggtgaacTCACACACGCAGGACGTCAAGCATGTGGTGTGGCACCCCAACCAGGAGGTCTTGGCATCGGCCAGCTATGACAACTCTGTGAAGCTGTACCAGGAGGAGGACGATGACTGGGTGTGCCGCGCCACGCTGGAGGGCCACGAGTCTACCGTGTGGAGCCTGGCCTTCGACCAGAGTGGAGGGCGGCTGGCCTCCTGCAGCGACGACCGCACCGTCCGCATCTGGAAGGAGTATCGCCCCGGCAACCAGCAAGGTGTGGAGTGTAACGGGACTGACCCCACCTGGAAGTGCGTCTGCACGCTGTCGGGGTTCCACTCGCGCACTGTCTACGACATCTCCTGGTGTCATCTGACCGGTGCTCTGGCAACCGCCTGCGGTGACGACGCGATCAGAGTGTTCGAGGAGGACGCGACCTCTGACCCCCACCAGCCCATTTTCTCCCTGACGGCCCACGTGCCCAAGGCCCATGGCCAGGACGTCAACTGCGTGGCCTGGAACCCCAAGGAGGCGGGGCTTCTGGCCTCCTGCAGCGACGACGGAGAGATTGCCATCTGGAGCTACCAACCGCAGCTCTGAGCAGGGGCTTCCTCTGTGGGAGGAGCTGATTAGGACTAATGGTTTATATACTGTCAGGGCAGGGGGTGATTAGTGCTATCGAGAAGTGACTAATAATTTAAATCCATGCACCCCTTATTAACAAACCCTGCTGGACGACTGTACAATCGCAGAGTTATGTTCTTGAGTTGTGTTGTGCAAAAGGCAACCAAGGACCAAcccaatttatatttttagcaaCTGCTGACTCCTTGTTGAGAGCAAGAATGAGGTGAAACTAACACCCTCAGAACTGACAATCCTGCCTGTTTGTGGGTCATTTGGtcttcttaaaatattaaataaaacttggGTTTAAGGTCAGGTTTTATGTGCATTTTCACAGAGAGCTATAGGGTGCATCACAGTGGGCTGAAACAAAACAGCCAAACGCAGTGCTATCAAGACTATCACTTAACACTCAATACCTTTAACAGTCTGTTACCATCTTAAGCACTTCAGTGTTAATGGTTTGGAAAGAGCCCAGGACCCGCCAGGCTGTGGATGTGCCTTGTATAGACAGAACCTCTTCCCTGTCCACTGCTTTAGCACCAACGCCAcagaagcaacaaaatgtaatttgttcgTTTATTAAGTGTTAATAAAGTTTACAGTATAT

Function

NR:

description
PREDICTED: probable cytosolic iron-sulfur protein assembly protein ciao1-A isoform X1

GO:

id name namespace
GO:0016226 iron-sulfur cluster assembly biological_process
GO:0097361 CIA complex cellular_component

KEGG:

id description
K24730 CIAO1, CIA1; cytosolic iron-sulfur protein assembly protein CIAO1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020883 True 1855 mRNA 0.54 7 35820156 35827073

Neighbor

gene id symbol gene type direction distance location
AMCG00020875 NA coding upstream 83167 35727752 ~ 35736989 (+)
AMCG00020872 NA coding upstream 403311 35416052 ~ 35416845 (+)
AMCG00020869 NA coding upstream 407361 35405143 ~ 35412795 (+)
AMCG00020868 NA coding upstream 418632 35376270 ~ 35401524 (+)
AMCG00020863 LOC102779543,LOC108260282,LOC102217523,LOC106917416,LOC103149690,LOC106950839,LOC103473804,LOC101061943 coding upstream 463640 35354706 ~ 35356516 (+)
AMCG00020884 NA coding downstream 24566 35851639 ~ 35859695 (+)
AMCG00020891 NA coding downstream 82279 35909352 ~ 35926494 (+)
AMCG00020893 tmed4,LOC107093818,LOC106566412,LOC101466713,LOC102209141 coding downstream 103549 35930622 ~ 35937150 (+)
AMCG00020892 ddx56,LOC107751685 coding downstream 110369 35937442 ~ 35950175 (+)
AMCG00020890 NA coding downstream 131556 35958629 ~ 35986692 (+)
G66348 tmem127,LOC106585551,LOC107713035,LOC107699648 non-coding upstream 2377 35813743 ~ 35817779 (+)
G66325 NA non-coding upstream 51585 35768241 ~ 35768571 (+)
G66319 NA non-coding upstream 59124 35758108 ~ 35761032 (+)
G66290 NA non-coding upstream 103907 35716045 ~ 35716249 (+)
G66258 NA non-coding upstream 266926 35552903 ~ 35553230 (+)
G66395 NA non-coding downstream 177546 36004619 ~ 36074421 (+)
G66524 NA non-coding downstream 897821 36724894 ~ 36725129 (+)
G66528 NA non-coding downstream 979247 36806320 ~ 36806577 (+)
G66602 NA non-coding downstream 1246606 37073679 ~ 37074634 (+)
G66696 NA non-coding downstream 1461441 37288514 ~ 37288841 (+)
AMCG00020874 NA other upstream 69710 35747156 ~ 35750446 (+)
G66149 NA other upstream 655171 35163813 ~ 35164985 (+)
AMCG00020855 NA other upstream 670738 35147603 ~ 35149418 (+)
G66060 NA other upstream 811834 34967844 ~ 35008322 (+)
G66008 NA other upstream 1032682 34784212 ~ 34787474 (+)
G66362 NA other downstream 40320 35867393 ~ 35908402 (+)
G66506 NA other downstream 427626 36254699 ~ 36256511 (+)
G66551 NA other downstream 1087742 36914815 ~ 36917436 (+)
AMCG00020942 NA other downstream 1739963 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 2289989 38117062 ~ 38137073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_10051106_10054840 NA coding CI01000010 null 10050850 ~ 10054840 (-)