G66319


Basic Information

Item Value
gene id G66319
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35758108 ~ 35761032 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU82924
cacatatatatacttcATGTATAATCTTGCACTTTATTCAAAATTTGACATGTGAGTGTTCTCTCATTTTTGGACTTTGGggcaagagagaaaaataaaatgaaaggagaCGTATGCATTTACCTGTACTTCAAGAAGGGGGGTAAGGGGAGGTGAAATAGTGTTCAGGAAAGGAGGGATTTAAATAGAAAAGGCACTTTTACACTTACAGCAACCAGTAGGGCCGTCCTCTCTGCAATTAAAACTGCAGCAAGAGGGAGCGCATGTAAACAGGCCAGCTTCTCTGTACAACACTGGCCAAAAAGATCTGCTGCTCAGGCCGCCAGAGGGACGAGCCCACGGTCGCGCTCACCTATCCAGTCAAGAATAATCCACACCAGCCAAAACCCTGCGGGGACCCCAAGGCTTTTCTGTACGACACCTCGGCCCACAGGGAGTGCTGGAACAAATGAATTAtggcatttgaaaacaaaaacatcttttggaataaaataaaagctgccTTCTGGAGCTCTGGCTTCTCTGTATCGACGCAGAGCTTCAGAGTACAATAAATAGGAATACAACAAGAAACTTCAAGTATCGAAAGCTTTCCAATTAAGACACTTTTTCAGAGGTCGTGATGGGAGCCGGTTTCTCTGTATCTACACCGGCTGTCAAGACGGAAAAGGAgtcttaattttttcttaaataaccATGTGTGTCAAAAGTGAAAACTCAAGCAAAAGACAACTGCCTTTAAAAGGAGTGATTTTGCAGTTGGTGGAATTAACTTTCTTATAAAGAAAGGAACTAAACCCTTTAATACCAGTGTGTTCGATCCTGCAGACCGTGGATCCCAGGGGCCACCCCCCCACGACTTCTCTGTATTACATCGTGAGGGCGCCGTGGTCTGACTGGAATAATGTGGAATAGGTTTTGACAGGTTTGGCCAACACGTCAACTGTGATGCATAGCGGCTTTAAAAATGACCCTCATCTCAAATTGTGCCATGATACAAGTCTGTCCTccacagagagagcagagaaaaAGATGGGGGCAGGGAGGAGCAGGTTTTTAAAACTACACAGACTCCAGGATAAGCCTACTAGCAGACCGACTATAAGCAACCATGCACTGCAGAGCTTCACTTAAAATGTGGTTGTGTGCGCGCAATTTATTACTGTATAAATCTTTTAAATGTCTCCATATACTGGGAAGACCTGGGAGGAGAGACCAATATCCAGGTCCACTGAGCGAAAAGCTTCACAAGCTCCAAGCAAGCACATCTGGCATTTCATAGGGCAACATTAAGGAcattcaaatttcttcaaatCCTACCATTTAggtttcccccccacccccccaaaggTTGACTTATGGAAGAAAGAGAAATTGTGCATTGCTGATGCAGATACTGTAACCTTCAAGTAATCGCTTTAGTTTTTGGGTGCACTTTCAACTTTGCTAGACCATGAAAGAGTGCCATGAAGTTGGGTACATTAGACGGGCAGGGAACTCAGGCCTCTTATGTCAAATGCAGTGATTTTCAGTGAACAGTtctaaaaaggcaaaaaaaatctaatctagCTGCAGAGTGGAAGAGGGACGGTGGGGGATGAGCCACGTGTCACAATTATTCGAGGGATGCCAGGTGCAAAAGcttaatggggggggggaaaacTAATGCAAGGATACATACATCCAGAGGAGCAAGTGCATTTAGGAAGCAGACGGTTCTAATGGTCCCAGCCACACAGACGGAGACTAAGCCAGCAGTCCAGACTGCTCAGAGTGGTAATGAGTCAGAAATGGGATGTGAAAACAGGGTTTGGggatttgagtttgtttttttaggaaaaTTTTGGGCCTTTTCCCCCCTAAGACCTGGAAGGCTTCTCTGTAGTATACACCAACAGGcctggggaaaaaaagcttAACAGATTTAGTATTTGAGCTTTTTGGGCACCTCCCAAGGGAAGGAATCCCTACCAAAGTGGCCATAGGCTGCCGTCCTCTGATAAATGGGTTTCTTCAGGTCCAGATCCCTGGAATACACAATTCACAGATTTAACAGCCATCTCTGCAGGATTGTCCTTTATGCACGTACACCGATTATAGACACCTAATTGGGTCATGACCTGTTCAATACATTTGTCTGCATGCGAGACCTCAAAAAAGATTAATGTGCAATTTGTACATCAAAAGTGGGCAGAGTGGATAACCTAGATCACCATAGCGATGAATGGGTTTCAACAGCCCACACTTTTGTTGCAAGTCACTCAGCTGGATACGAATGGCAGATCACGAATTAAAAGCAGTCTCTCCGCTTTGTTCTTTTTAAGTTAAGATACCGTCAactccaggaaaaaaaaaacaaaagtgtgacTTACCATGCTAATCAATCCTCTTCAGTGGGAGATGAAAACAGTATTCTTGGGTCCTGTTATCTACCAGTTCACTGCCTTTCCTGTACTGCAACTCCTTACGTTAATACCACATCTCTGCACTTTACGGTCTCCATTACCTTATGAATAAACTACAACTTATAAACTATCAATTTCTCCAGCTTTCAGAGCAGGAAGTGAAGAGGCACCAGGCCGTGGAGTTACAGTAACTGAGAGAAAGGTCACAGTGATTGACCCTTGCATTCACACAGCGGGGAGAGGGGTTCTACGCTACACAAACTGCCCTGCCGCTCTGGGGAGTGGACTTTACCTGACGATAACCCCAGGTCGGAGGTCAAAGTTCTTCCTGACAATGTCCAGCAGCTCCCTCTCGGTCTTCGGGGAAGTGCCATAGTGgaagatggagatggagagcgGATGGGACACTCCAATTGCGTACGCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU82924 True 2830 lncRNA 0.45 2 35758108 35761032

Neighbor

gene id symbol gene type direction distance location
AMCG00020875 NA coding upstream 21119 35727752 ~ 35736989 (+)
AMCG00020872 NA coding upstream 341263 35416052 ~ 35416845 (+)
AMCG00020869 NA coding upstream 345313 35405143 ~ 35412795 (+)
AMCG00020868 NA coding upstream 356584 35376270 ~ 35401524 (+)
AMCG00020863 LOC102779543,LOC108260282,LOC102217523,LOC106917416,LOC103149690,LOC106950839,LOC103473804,LOC101061943 coding upstream 401592 35354706 ~ 35356516 (+)
AMCG00020883 LOC106579887,LOC106585549 coding downstream 59124 35820156 ~ 35827073 (+)
AMCG00020884 NA coding downstream 90607 35851639 ~ 35859695 (+)
AMCG00020891 NA coding downstream 148320 35909352 ~ 35926494 (+)
AMCG00020893 tmed4,LOC107093818,LOC106566412,LOC101466713,LOC102209141 coding downstream 169590 35930622 ~ 35937150 (+)
AMCG00020892 ddx56,LOC107751685 coding downstream 176410 35937442 ~ 35950175 (+)
G66290 NA non-coding upstream 41859 35716045 ~ 35716249 (+)
G66258 NA non-coding upstream 204878 35552903 ~ 35553230 (+)
G66231 NA non-coding upstream 324550 35433268 ~ 35433558 (+)
G66151 NA non-coding upstream 587833 35167068 ~ 35170275 (+)
G66072 NA non-coding upstream 731879 35025003 ~ 35026229 (+)
G66325 NA non-coding downstream 7209 35768241 ~ 35768571 (+)
G66342 NA non-coding downstream 37678 35798710 ~ 35857028 (+)
G66348 tmem127,LOC106585551,LOC107713035,LOC107699648 non-coding downstream 52711 35813743 ~ 35817779 (+)
G66395 NA non-coding downstream 243587 36004619 ~ 36074421 (+)
G66524 NA non-coding downstream 963862 36724894 ~ 36725129 (+)
AMCG00020874 NA other upstream 7662 35747156 ~ 35750446 (+)
G66149 NA other upstream 593123 35163813 ~ 35164985 (+)
AMCG00020855 NA other upstream 608690 35147603 ~ 35149418 (+)
G66060 NA other upstream 749786 34967844 ~ 35008322 (+)
G66008 NA other upstream 970634 34784212 ~ 34787474 (+)
G66362 NA other downstream 106361 35867393 ~ 35908402 (+)
G66506 NA other downstream 493667 36254699 ~ 36256511 (+)
G66551 NA other downstream 1153783 36914815 ~ 36917436 (+)
AMCG00020942 NA other downstream 1806004 37567036 ~ 37575856 (+)
AMCG00020954 NA other downstream 2356030 38117062 ~ 38137073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G202401 NA non-coding NC_047606.1 CM018552.1 25505355 ~ 25565927 (+)
tiger barb (Puntius tetrazona) G161751 NA non-coding NC_056722.1 CM032091.1 9031218 ~ 9034283 (-)
mexican tetra (Astyanax mexicanus) G176874 NA non-coding NC_035916.1 CM008319.1 17021651 ~ 17024488 (+)