RNA id: TU82924


Basic Information

Item Value
RNA id TU82924
length 2830
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G66319
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35758108 ~ 35761032 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacatatatatacttcATGTATAATCTTGCACTTTATTCAAAATTTGACATGTGAGTGTTCTCTCATTTTTGGACTTTGGggcaagagagaaaaataaaatgaaaggagaCGTATGCATTTACCTGTACTTCAAGAAGGGGGGTAAGGGGAGGTGAAATAGTGTTCAGGAAAGGAGGGATTTAAATAGAAAAGGCACTTTTACACTTACAGCAACCAGTAGGGCCGTCCTCTCTGCAATTAAAACTGCAGCAAGAGGGAGCGCATGTAAACAGGCCAGCTTCTCTGTACAACACTGGCCAAAAAGATCTGCTGCTCAGGCCGCCAGAGGGACGAGCCCACGGTCGCGCTCACCTATCCAGTCAAGAATAATCCACACCAGCCAAAACCCTGCGGGGACCCCAAGGCTTTTCTGTACGACACCTCGGCCCACAGGGAGTGCTGGAACAAATGAATTAtggcatttgaaaacaaaaacatcttttggaataaaataaaagctgccTTCTGGAGCTCTGGCTTCTCTGTATCGACGCAGAGCTTCAGAGTACAATAAATAGGAATACAACAAGAAACTTCAAGTATCGAAAGCTTTCCAATTAAGACACTTTTTCAGAGGTCGTGATGGGAGCCGGTTTCTCTGTATCTACACCGGCTGTCAAGACGGAAAAGGAgtcttaattttttcttaaataaccATGTGTGTCAAAAGTGAAAACTCAAGCAAAAGACAACTGCCTTTAAAAGGAGTGATTTTGCAGTTGGTGGAATTAACTTTCTTATAAAGAAAGGAACTAAACCCTTTAATACCAGTGTGTTCGATCCTGCAGACCGTGGATCCCAGGGGCCACCCCCCCACGACTTCTCTGTATTACATCGTGAGGGCGCCGTGGTCTGACTGGAATAATGTGGAATAGGTTTTGACAGGTTTGGCCAACACGTCAACTGTGATGCATAGCGGCTTTAAAAATGACCCTCATCTCAAATTGTGCCATGATACAAGTCTGTCCTccacagagagagcagagaaaaAGATGGGGGCAGGGAGGAGCAGGTTTTTAAAACTACACAGACTCCAGGATAAGCCTACTAGCAGACCGACTATAAGCAACCATGCACTGCAGAGCTTCACTTAAAATGTGGTTGTGTGCGCGCAATTTATTACTGTATAAATCTTTTAAATGTCTCCATATACTGGGAAGACCTGGGAGGAGAGACCAATATCCAGGTCCACTGAGCGAAAAGCTTCACAAGCTCCAAGCAAGCACATCTGGCATTTCATAGGGCAACATTAAGGAcattcaaatttcttcaaatCCTACCATTTAggtttcccccccacccccccaaaggTTGACTTATGGAAGAAAGAGAAATTGTGCATTGCTGATGCAGATACTGTAACCTTCAAGTAATCGCTTTAGTTTTTGGGTGCACTTTCAACTTTGCTAGACCATGAAAGAGTGCCATGAAGTTGGGTACATTAGACGGGCAGGGAACTCAGGCCTCTTATGTCAAATGCAGTGATTTTCAGTGAACAGTtctaaaaaggcaaaaaaaatctaatctagCTGCAGAGTGGAAGAGGGACGGTGGGGGATGAGCCACGTGTCACAATTATTCGAGGGATGCCAGGTGCAAAAGcttaatggggggggggaaaacTAATGCAAGGATACATACATCCAGAGGAGCAAGTGCATTTAGGAAGCAGACGGTTCTAATGGTCCCAGCCACACAGACGGAGACTAAGCCAGCAGTCCAGACTGCTCAGAGTGGTAATGAGTCAGAAATGGGATGTGAAAACAGGGTTTGGggatttgagtttgtttttttaggaaaaTTTTGGGCCTTTTCCCCCCTAAGACCTGGAAGGCTTCTCTGTAGTATACACCAACAGGcctggggaaaaaaagcttAACAGATTTAGTATTTGAGCTTTTTGGGCACCTCCCAAGGGAAGGAATCCCTACCAAAGTGGCCATAGGCTGCCGTCCTCTGATAAATGGGTTTCTTCAGGTCCAGATCCCTGGAATACACAATTCACAGATTTAACAGCCATCTCTGCAGGATTGTCCTTTATGCACGTACACCGATTATAGACACCTAATTGGGTCATGACCTGTTCAATACATTTGTCTGCATGCGAGACCTCAAAAAAGATTAATGTGCAATTTGTACATCAAAAGTGGGCAGAGTGGATAACCTAGATCACCATAGCGATGAATGGGTTTCAACAGCCCACACTTTTGTTGCAAGTCACTCAGCTGGATACGAATGGCAGATCACGAATTAAAAGCAGTCTCTCCGCTTTGTTCTTTTTAAGTTAAGATACCGTCAactccaggaaaaaaaaaacaaaagtgtgacTTACCATGCTAATCAATCCTCTTCAGTGGGAGATGAAAACAGTATTCTTGGGTCCTGTTATCTACCAGTTCACTGCCTTTCCTGTACTGCAACTCCTTACGTTAATACCACATCTCTGCACTTTACGGTCTCCATTACCTTATGAATAAACTACAACTTATAAACTATCAATTTCTCCAGCTTTCAGAGCAGGAAGTGAAGAGGCACCAGGCCGTGGAGTTACAGTAACTGAGAGAAAGGTCACAGTGATTGACCCTTGCATTCACACAGCGGGGAGAGGGGTTCTACGCTACACAAACTGCCCTGCCGCTCTGGGGAGTGGACTTTACCTGACGATAACCCCAGGTCGGAGGTCAAAGTTCTTCCTGACAATGTCCAGCAGCTCCCTCTCGGTCTTCGGGGAAGTGCCATAGTGgaagatggagatggagagcgGATGGGACACTCCAATTGCGTACGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82891 lncRNA upstream 41859 35716045 ~ 35716249 (+) True G66290
TU82838 lncRNA upstream 204878 35552903 ~ 35553230 (+) True G66258
TU82810 lncRNA upstream 324550 35433268 ~ 35433558 (+) True G66231
TU82709 lncRNA upstream 587833 35167068 ~ 35170275 (+) True G66151
TU82704 lncRNA upstream 608690 35148214 ~ 35149418 (+) True AMCG00020855
TU82931 lncRNA downstream 7209 35768241 ~ 35768571 (+) True G66325
TU82953 lncRNA downstream 37678 35798710 ~ 35857028 (+) True G66342
TU82960 lncRNA downstream 52711 35813743 ~ 35817779 (+) True G66348
TU83019 lncRNA downstream 243587 36004619 ~ 36074421 (+) True G66395
TU83173 lncRNA downstream 963862 36724894 ~ 36725129 (+) True G66524
AMCG00020874 mRNA upstream 7662 35747156 ~ 35750446 (+) False AMCG00020874
AMCG00020875 mRNA upstream 21119 35727752 ~ 35736989 (+) True AMCG00020875
AMCG00020872 mRNA upstream 341263 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020869 mRNA upstream 345313 35405143 ~ 35412795 (+) True AMCG00020869
AMCG00020868 mRNA upstream 356584 35376270 ~ 35401524 (+) True AMCG00020868
AMCG00020883 mRNA downstream 59124 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020884 mRNA downstream 90607 35851639 ~ 35859695 (+) True AMCG00020884
AMCG00020891 mRNA downstream 148320 35909352 ~ 35926494 (+) True AMCG00020891
AMCG00020893 mRNA downstream 169590 35930622 ~ 35937150 (+) True AMCG00020893
AMCG00020892 mRNA downstream 176410 35937442 ~ 35950175 (+) True AMCG00020892
TU82915 other upstream 7754 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 593123 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 749786 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 970634 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 1346488 34404534 ~ 34411620 (+) True AMCG00020820
TU82978 other downstream 106361 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 493667 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1153783 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4560081 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 5290440 41051472 ~ 41052558 (+) True AMCG00021005

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU239527 True 925 lncRNA 0.42 2 NC_047606.1 25505355 ~ 25565927 (+)
tiger barb (Puntius tetrazona) TU239527 True 2333 lncRNA 0.40 2 NC_056722.1 9031218 ~ 9033572 (-)
mexican tetra (Astyanax mexicanus) TU239527 True 2607 lncRNA 0.42 2 NC_035916.1 17021651 ~ 17024488 (+)