RNA id: AMCG00020869


Basic Information

Item Value
RNA id AMCG00020869
length 2468
RNA type mRNA
GC content 0.63
exon number 8
gene id AMCG00020869
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35405143 ~ 35412795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCGGCTGCTAGCAATCGGACAAAGAACGTTAGTCACTGACGCCATTGTGGCTCGAGCACAGGAAAAGGCAAATGGCACCCAGGGTCGGGAGTTTGGAGCCAAAATGGCGATTTCTAGGAGCCAGATTCCACACGCTCGCTGTATGACTCGATGAATCGTTCCCGGCAGGGTAGGCTGCAGCGCGGAGGGGGCATCACATGACTCGCACAGAGCCCAGCTGCCCAAATCCAATATGGTGGCTAGCTTGGCAGGCTTACGGTTCTTGTTGATTATTGTGTTCCTCTGCGGGTTGGGGTTCGGCGCCAACGGCCAGCTGGCCCCGCAAGTGCTGGGGCTCAGGCTGGAGGACCCCGGCGGCCAGATCTTCATGCGGAAGGGGGTGCTAACGGCGCCCTACGGAGCCACTTTTCAGCTGCGGCTGTTTGGGTCTCACTTGCTTAACGAGACCTGGCCGCTAGTAGCGTTCGCCGAGGAGCCGGAGGGGGAGGCTGGTGCCCCCGACCCGTGCGAGGGACAGGGCGCCAGGAGCTCCGCTGTGTTCAGGGTCGAGAGCGGCTTTCACCCTGATGGGGAGTCCAGCGGGCTGATTACAGTGAAGACCGAGGAGAGGAGAACCGCCGTTAAATCCGAGGGAGGAGGGGGTTTATATCGCTTGTGCGTCGGGAGCGGCGAGAAATGGGCATCATTTGGGCAGGATAGGCTGCTGGTGGTGGAGGAGCCGCCTGAGCCCGACTACATCCCCGTGTGGGGGCTGGCGCTGGGCGtcgcgctgctgctgctggcctGCGCCGTGTTCAAGAGCCTGAACCTCAGCCTGCTGTGGCTGGACCCCCTGGAGCTGTACGTGCTGCACAGCTGCGGCTCCGAGCGGGACAAGAAGTCGGCCAAACGGCTGGAGCCACTCCGCCGGCGGGGCAACTTTCTCCTCTGCTCCCTGCTCTTCCTCTGCGCCCTGGGGCACTCCGCCCTGGGGGTGCTGTTCTACCGGGCCCTGGGCTCCGTGGCCCCCGCGGTGTTCCTCTGCGGCTTACTGGTGTTCCTCGTCTCCGAGCTGCTGCCCCACGTCCTCTGCTCCGGCTACGGGTTCAAGCTTGCGCCTGGGATGGCGTGGCTGGGCCAGGTGTGCATGGTGCTCACCTGCCCGCTGTCCTGCCCGCTGGGGCTGCTGCTGGACCTGGCGCTGCGCCGTGATGCCAGCACCTGCTGTGTGCGGGAGAAGATCATGGAGATGATGCGGACCAGCGACCCGTACAACGAGTTTGTGAAGGAGGAGTTCAGCCGAGGAGCGCTGCGGACCAAGACCGTGGAAGACATCCTGACGCCGCTGAAGGACTGCTTCATGCTGTCCTCCGTCGCCGTGCTGGACTTCGGCACCATGTCGGAGATCATGCAGAGCGGCTACAACCGGGTGCCCGTGTACGAGGACGAGCGCTCCAACATCGTGGACATCCTGTACGTCAAGGACCTGGCGCTGGTGGACCCGGAGGACCACACGCCCATGAGCACCATCACCAAGTTCTACAACCACCCGCTGCACTTCGTCTTCAACGACACCAAGCTGGACGCCATGCTCGAGGAGTTCAAGAAAGGTAAGTCCCACCTGGCCATCGTGCAGAAGGTGAACAACGAGGGGGAGGGAGACCCGTTCTATGAGGTGCTGGGGCTCGTCACGCTGGAGGACGTCATTGAGGAGATCATCAAGTCTGAGATCCTGGATGAGTCGGACGGATACATGGATATGAAGGTGAAGCGCCCCCTCCCTCCTATGGAGCTGCCACAGGCCACCCCCCGGGAGGACTGCTCTCTGTTCAAGGTACCTGAGGGAGACCTGAAGGTGCGCACCTCCCCACAGCTGCTGCTCGCCACACACCGCTTCCTGTCCCGAGGCAAGGCTGAccgactgtAGGTGGAGCACTTTGGTCCCCCCCGTGTGTCAGAGAAGGTCTTGCTCCATCTGCTCAAACACCCCAGTGTCAACCAGGAGGTGAAGTTCGACCCCAGTAACCGGCTGAGCTCCGAGCACTACCTGTACACCCGCAACCACCCTGTTGACTACTTCATACTGCTGCTGCAGggtcgAGTGGAGGTGGAGATCGGAAAAGAGGGGCTGAAGTTTGAGAACGGAGCCTTCACCTACTACGGCGTCTCTGCCCTGACGGCACCATCCTCAGTGCACCAGTCCCCTGTGTCCACGCAGCGCCGGACCCCCCAGGATCCCTTCGAGCTGGCAGACCTGAGCCCCTCGGCCTACTGCCCCGACTACACCGTGCGCGCTCTGACTGACCTGCAGTTCATCAGGGTGACCCGGATGCAGTATCTGAACGCCCTCATGGCCTCCCGTATCAGCACCACGACCCCGACCCCGACCCCGACCCCGACCCTTGACCCCCCTGAGATCAAGGTCGTCCCCAACAGCCAGACCAAGCTGCTCAATGAGAGGAACGCCAACACAGGGCGTCAGGCATAG

Function

GO: NA

KEGG:

id description
K16302 CNNM; metal transporter CNNM

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82709 lncRNA upstream 234868 35167068 ~ 35170275 (+) True G66151
TU82704 lncRNA upstream 255725 35148214 ~ 35149418 (+) True AMCG00020855
TU82612 lncRNA upstream 378914 35025003 ~ 35026229 (+) True G66072
TU82516 lncRNA upstream 654992 34749498 ~ 34750151 (+) True G65995
TU82517 lncRNA upstream 655800 34749127 ~ 34749343 (+) True G65996
TU82810 lncRNA downstream 20473 35433268 ~ 35433558 (+) True G66231
TU82838 lncRNA downstream 140108 35552903 ~ 35553230 (+) True G66258
TU82891 lncRNA downstream 303250 35716045 ~ 35716249 (+) True G66290
TU82924 lncRNA downstream 345313 35758108 ~ 35761032 (+) True G66319
TU82931 lncRNA downstream 355446 35768241 ~ 35768571 (+) True G66325
AMCG00020868 mRNA upstream 3619 35376270 ~ 35401524 (+) True AMCG00020868
AMCG00020863 mRNA upstream 48627 35354706 ~ 35356516 (+) True AMCG00020863
AMCG00020864 mRNA upstream 117325 35277860 ~ 35287818 (+) True AMCG00020864
AMCG00020859 mRNA upstream 229530 35173026 ~ 35175613 (+) True AMCG00020859
AMCG00020857 mRNA upstream 233042 35171052 ~ 35172101 (+) True AMCG00020857
AMCG00020872 mRNA downstream 3257 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020875 mRNA downstream 314957 35727752 ~ 35736989 (+) True AMCG00020875
AMCG00020874 mRNA downstream 334361 35747156 ~ 35750446 (+) False AMCG00020874
AMCG00020883 mRNA downstream 407361 35820156 ~ 35827073 (+) True AMCG00020883
AMCG00020884 mRNA downstream 438844 35851639 ~ 35859695 (+) True AMCG00020884
TU82706 other upstream 240158 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 396821 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 617669 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 993523 34404534 ~ 34411620 (+) True AMCG00020820
TU82307 other upstream 1345678 34059111 ~ 34059465 (+) True G65830
TU82915 other downstream 334430 35747225 ~ 35750354 (+) True AMCG00020874
TU82978 other downstream 454598 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 841904 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1502020 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4908318 40321113 ~ 40321821 (+) True G67108

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00076027 True 2178 mRNA 0.55 8 NW_008805502.1 1436 ~ 16007 (-)