RNA id: TU82953


Basic Information

Item Value
RNA id TU82953
length 2285
lncRNA type read_through
GC content 0.44
exon number 2
gene id G66342
representative True

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 35798710 ~ 35857028 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTTATAAGTTAGAATTTATTCCACAAACACGACACTGTTAAAACGAACCTGGCGATGGCTTGGCATGACATGTAGAGATGCAATGGCAGTGGACAATTCCAACAGTgtcattttaatacagtaatacattcCCCCGTCAGACATCAACCAAATGAAATCCATCCCACTGCCCACCAGTCAGCAAGTGCCTTTGTGTCTCTCAAgaataggagaaaaaaaaaaagttacatttagcTGTCGATTTAGGCCACAATTGCAGCTCTTAAGATATATTAAAACAGATCTCCAGTTTCCTCAATCTACATTCCAACACACAACCAAATATGCATCACAAAACCAATGActtcaaaacagaacaaaaacgcATTCTCATTTGGTAATTTCCAGACATCTTTTGAGTACCAGCTGTCGTACCTTTTTTATTAGGAAAAGTACCCCACTTAAGAAGCTTCTGCATACAGGTTACTATACagcctacaaaaacaaaacaaaacctaaaataacACTCAGAAAACAAGTGCAAATCAGAAATGCAAAGGTTTCCAGAAAGACTTTGTTTCCACGTTGGGTGCTTCTGGGTCGGAGGCAGCAGCTATAGAATCAGGTTTAGAGTCTGTACACTGTTCGCAATAAACCCTTTTAATGATAGCGGACACACAGGACTTAAATTAATATAGACACTTCATGTGGGATCTTCAGCCAAGAGATTGattaataacactttttttttttttttttttaagaaaaaatatttatccaAAATCTTATTAATAAGCTAGAagtcataataaaaaataaaaaaaaagacacacccAGTATTGTTCTTCAGACCTCAGTGCAGACACCAATCAGCGTGCGGAGAAAGAAACATCGAATCATGAAGAGCAACAGAAAAGGTTTGCTTTCTAAAAACTACTGTATTCCACCTGCTCGTGACTAAACCAATTCCTCCATCTGTGGCCTACgcttaagattaaaaaaaaaaaaaaaactcctgcaAACAACTAGGGCAAATGACAGCCCTACTGCACAGTTTCTAAGTAGGAGTTTTCCACTCTTACTCTCATTTTATTCGATGTGTAACCTTGGGTCTCTCTAGTGCAGGTCTGAGATGCAGGAAGAAACACTGCAAACTAAGAGAACATGATAAAGCAAACTATATTATCATGATTGAACCAAAACGTGGATTAACcgttgtaaaatgttaaaaaataataattcaacagCAGTTTTCCGTGGCTCTTTACCCGAGCACTATATACCCACGAGGGCTCTTGTCGAGGCGGGCGTGCTCTGTGTGAGACGCGTGTTGGCGCACGCCCAGGACAGAGAACCGCTGCAGGCTTCTGACACTCACTTGAAATGTCATGGGGCCGGATTGAAGCCCGGCGCCACTGCAAGAGCAGCGCTCTCACGGCATCCCGGGGTCTGTTGGCACGGCTGCGCCCGCCTGACCAGGGATGTCAAGACTGAAACCACAGCCACCTACAGCCTGAATGTGGCAGAGGCCTGATTAACAGCCCAGCTGCCCAGGTTGAGCCCCCATTCCCGATTACTGCTGCATGCCTTCTGTCCTTCATTAGGCCTGACTAATTCTCCAAACATGAGGCGTCCAGGATCTCTTCTGTGATCGAGACCCAGTTTAGTACAGTCCTTGGTTCGTCCTTCACAGAGCTCAAGTGgatcagaagaaaaagaaaacgggAGGCTGTGTGCTGCCCCCCGGTGTGCTGTGGAAGTATTACATTAGAGGGGACATGGAGGGATGCTTCAGTCAGTGCTTTTTTTAGTTTGAGGGAATAGAGATATGGTTCCATTCTTGAGCCAATAgctaaataaagcaaatgtgtttgtcaGCGAACGTGACCGGGATCACAGACTCTGGCAGGATGGATCTTGCCCACGGCCGAACCCGGTGCTCACGTTGtcgcacacactcactcactcactcacacactcacacactggaGAGAGGTCCACAAAGCAGGGCCAGTATGCCCACTGACCGCAAGGTGCAGCAGTATTAACCCAGGCTTGTCCTTGTGTAACGACTTTCACCCCTCCCAGTTACAACCACtgacaatttttcttttttcacttttctttaaaaaaaaaaaaaaaagcatataaaGCAGCGCTCCATCAGCCAAGGCTGCAGTGAGGAAATGACCTGACCTTGATGTTTGAAGGACgctcttgagagagagagagagagagagagagagagagagaggcagagagagagagagagagagagagagagggagagagagagagagagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82931 lncRNA upstream 30139 35768241 ~ 35768571 (+) True G66325
TU82924 lncRNA upstream 37678 35758108 ~ 35761032 (+) True G66319
TU82891 lncRNA upstream 82461 35716045 ~ 35716249 (+) True G66290
TU82838 lncRNA upstream 245480 35552903 ~ 35553230 (+) True G66258
TU82810 lncRNA upstream 365152 35433268 ~ 35433558 (+) True G66231
TU83019 lncRNA downstream 147591 36004619 ~ 36074421 (+) True G66395
TU83173 lncRNA downstream 867866 36724894 ~ 36725129 (+) True G66524
TU83177 lncRNA downstream 949292 36806320 ~ 36806577 (+) True G66528
TU83253 lncRNA downstream 1216651 37073679 ~ 37074634 (+) True G66602
TU83364 lncRNA downstream 1431486 37288514 ~ 37288841 (+) True G66696
AMCG00020874 mRNA upstream 48264 35747156 ~ 35750446 (+) False AMCG00020874
AMCG00020875 mRNA upstream 61721 35727752 ~ 35736989 (+) True AMCG00020875
AMCG00020872 mRNA upstream 381865 35416052 ~ 35416845 (+) True AMCG00020872
AMCG00020869 mRNA upstream 385915 35405143 ~ 35412795 (+) True AMCG00020869
AMCG00020868 mRNA upstream 397186 35376270 ~ 35401524 (+) True AMCG00020868
AMCG00020891 mRNA downstream 52324 35909352 ~ 35926494 (+) True AMCG00020891
AMCG00020893 mRNA downstream 73594 35930622 ~ 35937150 (+) True AMCG00020893
AMCG00020892 mRNA downstream 80414 35937442 ~ 35950175 (+) True AMCG00020892
AMCG00020890 mRNA downstream 101601 35958629 ~ 35986692 (+) True AMCG00020890
AMCG00020895 mRNA downstream 164609 36021637 ~ 36029074 (+) True AMCG00020895
TU82915 other upstream 48356 35747225 ~ 35750354 (+) True AMCG00020874
TU82706 other upstream 633725 35163813 ~ 35164985 (+) True G66149
TU82596 other upstream 790388 34967844 ~ 35008322 (+) True G66060
TU82530 other upstream 1011236 34784212 ~ 34787474 (+) True G66008
TU82376 other upstream 1387090 34404534 ~ 34411620 (+) True AMCG00020820
TU82978 other downstream 10365 35867393 ~ 35908402 (+) True G66362
TU83151 other downstream 397671 36254699 ~ 36256511 (+) True G66506
TU83200 other downstream 1057787 36914815 ~ 36917436 (+) True G66551
TU83857 other downstream 4464085 40321113 ~ 40321821 (+) True G67108
TU84041 other downstream 5194444 41051472 ~ 41052558 (+) True AMCG00021005

Expression Profile