RNA id: TU239527


Basic Information

Item Value
RNA id TU239527
length 2333
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G161751
representative True

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 9031218 ~ 9034283 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cttgatcgtgttaggatccttgctgtctaCGGGTGGTCCCCCATCCAATTAAATCCATAATGAGTCACGGACTGAATGATTCAAACAACTCTCTTCCCGGCTCTTCCCACAATCGCACAAACCGTTATGTATCAATGTGACAAGCCGTTAGGCGCAATTTCCAAAGGCTCTTGCCATCCTTTTGAAAATCCGATTCTCTTTCCACTCCCTTATTCACATACCCATCACAAATCAATGATAGGTTTCAATCAGGGTTACGCAGCGGGTTCGAGTACCATTTAATGGTGTATTTGAGGTTGGGTTGGCTAACGGTGCTGTCGTCCAGGAAGATCGTCGAACAGGAGCTGTACTTGCGTCTCATTGGGCCGGATGGATGTTGCTGAAACACAAGGACACACAGAGTGCAAACAAGAATATCATTtattctcaaacacacacacaggctgaaaATTCGGCCACCTGCAAGCCATTATCATCTCATTTATACCTGGCTGATTCTCGCTTAATGCGTGTGCGTTAGTGTGGGTTAGAGTCCCAATCCGTTACAATGCAACACACGCTACTGTATTACGCGAGATTTCAAACTGATAAGCGACATTAGCGATGCGAATAAATCATTACAACGTTAAAACCGACTCGATATCACAGTTTAAGGAAAGTAAAAAGAGCAATGAGCAAATATTTACCTTCGACTCCGCAATGTGTGTTAACTTGCAAAGTAACAGAACACATTAAAATAGGAACAAAACATAAGCTATTCATTGCAAGTTGTGTATGAATAGCATGCGGTGATGAAATGAAGAAAATCGAGCTATGCATATTAAAGGAATGGTCCacctaaaaatgacaatttagcCGCTGTCagaccatccaagatgtagatggctttgtttcttcatctgaaattttatattacatCACTCGCTCGCAGGTGGATCCACTGtagtcaatgggtgccgtcaaaatgagattCCAAACAACTGATGAAGTGGTGTGGGTTACTTGTGGGTTACTTGTGGtgtttttttctccaaagtttggactcttattctgacggcacccattcaccgcataGCATCGATTGGCGAAGGTGACGTAACGCTATACGTCTCCAAATCTTCTCcattgaagaaacaaactcttctaCTTTTTCGAACGGCCTGAAGGTGCATTTTCGACAAACCgtcattttttggtttctttacAACATTTATATAGAACGAATAAGAGTGGATCAGAAAAGCAAGGCTGTTAATGATGCGACGCAATCCCGGAGGCTCATGCAATACCGGTTCGTGCATTCTGTGGGATTCGATTAGTTCGGCGGGTTGCTGTGACGTCTTCATCGCAGAGACGAGCGTTACGACAAACACGAAACACGTACGCACTGGCTGCTGCTACTTACATGGTTGACGTACAGACTTTTCCGTTTTTCCCGAACTGTGAAGAGAAACACACAATTAATAACACTAGCGCTGCAGTCGcttctgagagagaaaaagacaggtCTTTAACTGTTGGACGGTGTTTCGTTAACAGTTTAGGGGGCagagttaaaaaagaaaatgcgcTTTAATTAAACTGTCCTTAACGTATCTTGCTGGTCTCTTAGAGAGAGCTCTGACTATCAGCGTGAAGTCTGGTCCAATTTAGGGCTTGTTCTAGCAAAGAAACATCCAATTAAGCGAAAGCATGCTTCGGTTTTGATGCAAAGAGCTACTGATTGTGTACAGTCGAAGACATAACCTTTCaaagtatacttttatttgtataaaagtgCTTAACTCATGCATGCTCAAACGTTTCATCAACGTAAAGGGTCTGCACTATTATATACGATAAAAAGGTCTTTATAGGGATTAATGCAAGAGTTGCGTTCTCTCTTAAGCCATGCACATGATATTCTTGGCAAAAAGCTATTGTggccacaaataaaaaatgtgttcccttattttattactattattatttaaaattcctTGCCATGTTTaagcaaaattaataaatatagaatttgtTCCGTTATTTGAGTACATCATGAGCATGTTGTACTGATTTGTAccttcattttaatgaaatcaaaataaaggagcatgtttttaatttgtggccacaacgtgttttttttttttttttttaaatcaagtatCTATCAGTGAGTAAATCTAGCAGCACACAAATGATCATGCAGCAGTTGCACAGCACACTAGTGATGTCTACCAAGGGTTTGGACTCTCTCAAAGCTTCATAaacctttctatttatttgcCATTGTTCGTGTAAGAAAGTTTAATGTATCTAATACTGTAACATTCCTAAAAAGCTTCTTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239509 lncRNA downstream 137851 8893148 ~ 8893367 (-) True G161737
TU239506 lncRNA downstream 144004 8886948 ~ 8887214 (-) True G161734
TU239495 lncRNA downstream 235381 8793901 ~ 8795837 (-) True G161725
TU239442 lncRNA downstream 497027 8533968 ~ 8534191 (-) True G161687
TU239419 lncRNA downstream 554165 8476719 ~ 8477053 (-) True G161671
TU239537 lncRNA upstream 12041 9045613 ~ 9045907 (-) True G161758
TU239627 lncRNA upstream 388118 9421690 ~ 9422031 (-) True G161833
TU239633 lncRNA upstream 396718 9430290 ~ 9461957 (-) True G161839
TU239685 lncRNA upstream 813821 9847393 ~ 9847860 (-) True G161878
TU239832 lncRNA upstream 1101875 10135447 ~ 10158815 (-) True G161973
XM_043226044.1 mRNA downstream 151086 8873506 ~ 8880132 (-) True klf6a
XM_043225790.1 mRNA downstream 362088 8530108 ~ 8669130 (-) True adarb2
XM_043225798.1 mRNA downstream 531896 8495872 ~ 8499322 (-) True idi1
XM_043225730.1 mRNA downstream 567718 8458635 ~ 8463500 (-) True slc35g2b
XM_043226539.1 mRNA downstream 598161 8423892 ~ 8433057 (-) False nck1b
XM_043226900.1 mRNA upstream 19213 9052785 ~ 9055405 (-) True fzd8a
XM_043226915.1 mRNA upstream 185252 9218824 ~ 9223818 (-) True cpb1
XM_043226916.1 mRNA upstream 190440 9224012 ~ 9233947 (-) True agtr1b
XM_043226917.1 mRNA upstream 190440 9224012 ~ 9233932 (-) False agtr1b
XM_043226554.1 mRNA upstream 309995 9343567 ~ 9346857 (-) True zic1
TU239150 other downstream 1624535 7390095 ~ 7406683 (-) False pard3aa
TU238971 other downstream 1934379 7090532 ~ 7096839 (-) False ralaa
TU238949 other downstream 2025810 6945186 ~ 7005408 (-) False G161327
TU238957 other downstream 2063619 6945186 ~ 6967599 (-) True G161327
TU238790 other downstream 2561117 6396171 ~ 6470101 (-) True G161224
TU239703 other upstream 897723 9931295 ~ 9932802 (-) True G161893
TU239863 other upstream 1247225 10280797 ~ 10286608 (-) True G161992
TU239881 other upstream 1362512 10396084 ~ 10413468 (-) False myo3a
XR_006247939.1 other upstream 1417987 10451559 ~ 10458476 (-) False zgc:174877
XR_006247941.1 other upstream 1420426 10453998 ~ 10458476 (-) False zgc:174877

Expression Profile