RNA id: XM_043226044.1


Basic Information

Item Value
RNA id XM_043226044.1
length 3440
RNA type mRNA
GC content 0.46
exon number 4
gene id klf6a
representative True

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 8873506 ~ 8880132 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAAGTTGACAGAGCGCAGCGCTTTGCGTGAGTTCAGTGTTTGCAAATACAGAGTGATCTCAACAGACGGACTAGCGGACTCTGAGCAAAGCGACGGCTGCACTGCGTTGCTGTTGCACGAAGAGGACGCTTGCTTGTCACACTTTATCTCCGATTCGTcaagatacatatatatatatatatttttctgtcttttattgcCTGAAACGTGGGATTGCAATGGATGTTCTACCGATGTGCAGCATATTTCAGGAACTTCAGATCGTTCACGACACTGGCTATTTCTCTGCATTGCCATCGCTTGAAGAATACTGGCAACAgACCTGTTTGGAGCTGGAGAGGTATTTGCAGAGCGAGCCGTACGTCTCGGCGTCTGACCTCAAGTTCGAGGGCCAGGAGGATCTTTGGAGCAAGCTCATCTTGGCTTGTGGAGATAAGGGAGATGGGAACGGCAACCTTCCCGGCGTCAAGGAGGACGACAATCAGGACTGCCAAATATTAGAAACCAACAGCATGAATTCGGATGCCAGCAGCGAGGCGTCTGACAGTTCGGAGGAGCTCTCGCCCACTCACATCTTTACCTCCAACCCGCTGGGCTCGGTTCTGACGGAGTCAGCGCATCACTTGAGTTCCTCTATCATCAGCACACCTCCGTCCTCGCCAGAGACGCCCCAGGAGCCTGGCGTCCCGCAGGTCTGGGGCTCCACGCAGACTGACTTGCACGTGCCGGTGAAGATCCGGCCAAACGGACTGGGGAAGGCCTCGGATAAGGCCTCTGCGGGAGGGGACGCCTCTCCGGACGGCAGGAGGAGAGTGCACAGGTGTCACTTCAACGGCTGCCGGAAGGTTTACACGAAGAGTTCTCACTTAAAAGCACATCAGCGGACTCACACAGgTGAGAAGCCGTACAGGTGTTCATGGGAAGGCTGCGAGTGGCGCTTCGCGAGGAGCGACGAGCTAACCCGACACTTCAGGAAGCACACCGGTGCAAAGCCATTTAAATGCAGTCACTGTGACAGGTGTTTCTCCAGGTCAGACCACCTGGCCCTGCACATGAAGAGGCACCTCTGAGCGGGCCGTAGCTTCACGCTGGGGATATGTTGTGTCCTGACCAGCTTCCTGGTTGACCTGGCCCTGCGAGAAATGGAGGGGGGAGTGTGTTCCAGCCAAAGCATGCCATTTTGCACCATATCCTGTGCCTCCGTGAGCCCCGGGATAAAGGCGGACTGACTGGTTGTTGAAACGAAAAAAGGAAGGGACAAAATCACGTATGAAGAAGAACCGAggatgatttattaaaaaaaaaaaaaaagaaaaagtaaaaaaaaaaaacacaaaaaaaaaaaaagcgaatgAATGGTGTGTTGTATGGTGCATGATGTTTCGGGACAACTCCTGGACTATACACTGgtacttttaaaacaaatcctgtTTGACGTGAGCGGATGATTGTCCCGTGTGCAGAGAAGGGTGGGAGGGGGGTACCAGTGTATCGCTGTGGGCTGAATGGTGTCGGGGAACAAGTTCCGTTTTTGTTTCCGTGCGGTATGCGAGAACCGTGAGTGAAGCCGTGAGACTGAGAACTCCTGTCTGACGCCCCCGGGCTCCGGGATTCTGGGGGGCGTAGCGGCCAGGGTTTCACCCCCCTCCCGCCCCCATCTAAAGGAGGGGGGATGGAAGCTCGGTCCTGAATGAAAGTGGCTTTTTTGGTGTTCGGTGCAGCTACTAAATGTGCAATGTGTTCGGTGGCTTGTCCTTCGACAGGCTACAAAAGCTCATTTGTAGTTCGTTGTATAAGCTGTGTGCTTAGAGATGTAACACAATTATAACTTCACTATCATAAACAGGTGTTGCATGGTATTGgggtttgtatttttttttctttttctttctttttttttttgtaattgggACTGCAAATAGATTCCAATAAAGCGCAGCTAAATACAATTGGGTTAAATGTTACAATATTGTACATAAACGCATTGATCATTCTTCAAATtccctcttttattttttttctttccggTGGAGGGAAGAATCCTATCCGTCGGCGACCATTTCATACAAAACTCGTTTTTTGTCATCTTAAAGACCGAgttctctctttctatctccaTTTTACCTGTTGTTAATGCACTGTTGGCCTTAATGGTGCCTTATGCAAGTGACCTTTCCCATTGGGGGGTCACAAAATGTCTTGTATaagtgattgaaaaaaaaaaagctttattaagGCTCTGTTTCACCTGAACATGCACCTTTCCTATTTCCGAGGCCACTGTAGTCAAGCCCTTGTAGATacgtaatatattattattcttattcttattcttgAGCATGCGATTTCATTATTATACTTCCCTCACATTTCTAGATCTGCGATTGTAGAGCACTTAAAGTAAGGATTTGGTATCTACTGAACGTTTCGAATACGCTTCAGAGCTATCCGTGGAGGTGTGCGGCGAGACCAAAAAGCTCTTAAAGTGCGAAAACGGCTCGTTGTGTAACACAAGGCCGAACGTTTGTGGAACGCCAACCCCCTCCCGGTCCCCCGTAACCaagaataaaggaaaaaaacgGCTAaagatttattgtaattaacaAGCTGCAGTCAGACAGGCCTTGCCTTGTACTGCCTCTCTGTAATGAATTGCTGAAGGCCCTGCCTGCTACAGACTGCTGACTCGGGCAGTTCGATATTGACCTGTCTGGATGCCGTTGTTTTAGTCCAGCGACAGTATTGTGGAAACAGTGCACAGCCATCCAGAAAGATAAAGATATATCACCCCCCTTTTCAACATTTACAATGGAAAGCCTCTCGGCTGGCTGTGCGCGTTTCTTTCGCGATCTGAAATGTAAACCATAATGCTTTCAGGGACCAAACCGTCGATTAAATTTATTGTACATAGTTCTATGCTTGAATTATTCGAGTGTAATTGCTCCGGTTTCTTGAGCGATGGAGGTTTGACACTGTTGCATGTCGAGCAGCTACGTGGATACGGATCGTTTCGGCGGGAGAAAAGTAACTTGAAGCAGCTCGCGCTGCCATTTAAATCAGACCAGCCAGGGTTTTGTGGGCAAAGAACGTCGCGTCTTTCCAACAGTGGCCAATATTAGAGTGGTAATGGAGCCTTAATCAAGTTTTCCATTTTGCTTGCTTCAACCAACACTTTCTATCACTTATCTTTTCTCTCATGAATCCCTCTTGTCTAAAGAATATTTgtacaaaagaataaaaacacacaaaagttaggatgaaaaatacaaaaaggaaaaaaaaaaaaaacgacaacttttgtaagatttttatttgtttttgtttttttgttttttgctttatatgacttttatttgaaattgttttgcaaaattgttatatttctgtatgaatgtattttttattggaaTAATAAGAAATTCTTATCGGACAAGtttga

Function

GO:

id name namespace
GO:0035265 organ growth biological_process
GO:0031016 pancreas development biological_process
GO:0048565 digestive tract development biological_process
GO:0021634 optic nerve formation biological_process
GO:0001889 liver development biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K09207 KLF6_7; krueppel-like factor 6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239495 lncRNA downstream 77669 8793901 ~ 8795837 (-) True G161725
TU239442 lncRNA downstream 339315 8533968 ~ 8534191 (-) True G161687
TU239419 lncRNA downstream 396453 8476719 ~ 8477053 (-) True G161671
TU239418 lncRNA downstream 397031 8476173 ~ 8476475 (-) True G161670
TU239416 lncRNA downstream 398799 8474490 ~ 8474707 (-) True G161668
TU239506 lncRNA upstream 6816 8886948 ~ 8887214 (-) True G161734
TU239509 lncRNA upstream 13016 8893148 ~ 8893367 (-) True G161737
TU239527 lncRNA upstream 151086 9031218 ~ 9033572 (-) True G161751
TU239525 lncRNA upstream 151989 9032121 ~ 9034283 (-) False G161751
TU239537 lncRNA upstream 165481 9045613 ~ 9045907 (-) True G161758
XM_043225790.1 mRNA downstream 204376 8530108 ~ 8669130 (-) True adarb2
XM_043225798.1 mRNA downstream 374184 8495872 ~ 8499322 (-) True idi1
XM_043225730.1 mRNA downstream 410006 8458635 ~ 8463500 (-) True slc35g2b
XM_043226538.1 mRNA downstream 418381 8423892 ~ 8455125 (-) True nck1b
XM_043226539.1 mRNA downstream 440449 8423892 ~ 8433057 (-) False nck1b
XM_043226900.1 mRNA upstream 172653 9052785 ~ 9055405 (-) True fzd8a
XM_043226915.1 mRNA upstream 338692 9218824 ~ 9223818 (-) True cpb1
XM_043226916.1 mRNA upstream 343880 9224012 ~ 9233947 (-) True agtr1b
XM_043226917.1 mRNA upstream 343880 9224012 ~ 9233932 (-) False agtr1b
XM_043226554.1 mRNA upstream 463435 9343567 ~ 9346857 (-) True zic1
TU239150 other downstream 1466823 7390095 ~ 7406683 (-) False pard3aa
TU238971 other downstream 1776667 7090532 ~ 7096839 (-) False ralaa
TU238949 other downstream 1868098 6945186 ~ 7005408 (-) False G161327
TU238957 other downstream 1905907 6945186 ~ 6967599 (-) True G161327
TU238790 other downstream 2403405 6396171 ~ 6470101 (-) True G161224
TU239703 other upstream 1051163 9931295 ~ 9932802 (-) True G161893
TU239863 other upstream 1400665 10280797 ~ 10286608 (-) True G161992
TU239881 other upstream 1515952 10396084 ~ 10413468 (-) False myo3a
XR_006247939.1 other upstream 1571427 10451559 ~ 10458476 (-) False zgc:174877
XR_006247941.1 other upstream 1573866 10453998 ~ 10458476 (-) False zgc:174877

Expression Profile