zic1 (zic1,LOC107588038,LOC107557563)


Basic Information

Item Value
gene id zic1
gene name zic1,LOC107588038,LOC107557563
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 9343567 ~ 9346857 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043226554.1
TTATCTGCAGGAATGATTGCGACTATCAGTCTGAAGCTCACCGCCTGACTGAGGAGGTGAAAGTTGCGCCACAGGAAGATAAACCGCAAAAGACAATATTGCACATGATTTGCGTGCGCATCGGATGAGCAGGAGAGGGAAATTCCTCTCCACTAAAAGTAAATAGGAATAGGGGATCGGAGTTCGCCTCGCCTCGCACAGACTCGAGTCAGAGAAATAGCAAGCAGAGACAGTTGCTAGAGATTCTTCCTCTCTCAGTCTCCTCCGCTGCAGACTGAAGATGCTCTTGGACGCAGGACCACAGTATCCCACCATTGGAGTGACTACTTTCGGCTCCACCAGACATCACTCAACAGGCGAAGTTACAGATAGAGAAGTGGCTTTGGGTATCAATCCGTTCGCCGACGGTATGGGCGCTTTTAAAATCAACCACAGCTCCCACGACCTCGGCTCCGGGCAAACGGCGTTTTCCTCGCAAGCGCCGGGCTACGCCGCCGCCGCTGCCCTGGGACACCATCATCACCCCACTCATGTCAGCTCGTACTCCACCGCCGCTTTCAACTCCACTCGGGACTTTCTCTTTCGCAATCGAGGCTTCGGAGACGCCACGAGCGCGCAGCACAGCCTGTTCGCCTCCGCCGCTGGAAGTTTCGCCGGACCGCATGGACACTCCGACGCCGCCGGGCACCTGCTCTTCCCGGGACTGCACGAGCAAGCGGCCACGCACGCGTCCTCCAACGTGGTGAACGGTCAGATGCGCCTGGGCTTTTCCGGGGACATGTACGGCAGGGCCGAGCAATACGGTCACGTCGCGAGCCCCAGGTCCGAGCACTACGCCTCGACGCAGCTGCACGGCTACGGCCCCATGAACATGAACATGGCTGCCCATCACGGGGCAGGGGCCTTCTTTCGCTACATGAGACAGCCCATAAAGCAAGAGCTCATCTGCAAATGGGTCGAACCGGAGCAGCTGACGAATCCGAAAAAGTCCTGCAACAAAACTTTCAGCACCATGCACGAGCTCGTGACCCACCTGACCGTGGAGCACGTCGGGGGAACGGAGCAGTCGAATCACATTTGCTTTTGGGAAGAATGTTCCCGGGAAGGGAAACCGTTTAAAGCGAAGTACAAACTCGTGAATCACATCAGAGtgcacaccggagagaaaccgtttCCGTGTCCGTTCCCCGGCTGTGGAAAAGTATTTGCCAGATCGGAAAATCTGAAAATCCATAAAAGAACACACACCGgTGAAAAACCTTTCAAGTGTGAGTTTGAAGGCTGTGACAGACGCTTTGCGAACAGCAGCGACCGCAAGAAACACATGCACGTCCATACTTCAGACAAACCGTACCTCTGCAAAATGTGTGATAAATCCTACACACATCCCAGCTCCCTCCGGAAACACATGAAGGTTCACGAGTCGTCGTCTCAAGGATCCCAACCCTCCCCGGCAGCCAGCTCCGGCTACGAGTCCTCCACGCCGCCCACCATCGTGTCCCCTTCCACAGAAAACCAGAGCAGCAGTTCCATATCACCAGCGTCGTCCACAGTTCACCACACGAGCAGCCACAGCACCCTTTCGTCAAATTTTAACGAATGGtacgtgtaaatattttcaaaaagacTGCAGAATTAAGACTGCTTTGGAACCAAGACTCAAAAAAAAGTCAGCCTATTCTCGCGTGGacctacatacacacacaatgtgaAGAATCTGAAAAGGTTTTCTCAAACCCGCAGAGAGCTGCGCATGGACTGGGTGTGCGACGCTCCCGacagcttttttaatttttaattttattttcttctttctgttttttttttttttctccccttcaTATTTTCGGAAGACTGCACAGAACTCCAATTGCATGCTATACCAGCAGGTcacagcctgttttttttttttttttgttttttttttctctctcctccttcttctttttGTACATAAAGATTCGCCTagttcaaaatgtaatattttattttgtaaatagtCATAATACAGTTTAAGGGAATTTGTGAAAAAACGTGGTCCCTAGATATATGGAAAATGAGATGGTTTTACGAATATTTGCGATGAATAGTCTTGACTGAAAAGAATGTTATAGTTTATGTGTACCAAATGTGAATTACCCAGTATTACCACAGTCTACACGTTTACCTAACCGATTAGTATTAATGTGCTTTTGTATCCAGTGCAACATTTCGTCTCCAGTCCAGTCTGAGTAGCACACAGTTGTTGTTATTTAATGTCATGTCGATAAACCGTGTAGTGAAAGCCTGAAGCTCCGTGTCAATCTTGTTTATGTaagtgataaaatataaaactatctGTCTGCTGCATTGGCAACTGCAAGAAATTATTACTTGTATATAACTCAATTTTCCATATTTATCCGCATGTAAAGGACCGGTAACACATGTTAGAGATAATCGGTATTTATGGAAAATGCGTTCGTAGGGTATGTAAAATTTAgtttacaaaataatgtttggtTACTTTTCGTACAACATTAAAGAATTAAAcgtacaacaaaaacaaaaa

Function

symbol description
zic1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and zinc ion binding activity. Acts upstream of or within brain development and embryonic retina morphogenesis in camera-type eye. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; neural keel; neural plate; neural rod; and presumptive neural plate. Human ortholog(s) of this gene implicated in Dandy-Walker syndrome and craniosynostosis. Orthologous to human ZIC1 (Zic family member 1).

NR:

description
zinc finger protein ZIC 1-like

GO:

id name namespace
GO:0021534 cell proliferation in hindbrain biological_process
GO:0021592 fourth ventricle development biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09224 ZIC1; zinc finger protein ZIC 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043226554.1 True 2551 mRNA 0.48 3 9343567 9346857

Neighbor

gene id symbol gene type direction distance location
agtr1b agtr1b,LOC107681633,LOC107588039,LOC107739124,LOC107717774,LOC107557561,LOC107663725 coding downstream 109620 9224012 ~ 9233947 (-)
cpb1 cpb1,LOC107687549 coding downstream 119749 9218824 ~ 9223818 (-)
fzd8a fzd8a,fzd8,LOC107739125,LOC107717597 coding downstream 288162 9052785 ~ 9055405 (-)
klf6a klf6a,klf6,LOC107717335,LOC107687512,LOC107739128,LOC107663727 coding downstream 463435 8873506 ~ 8880132 (-)
adarb2 adarb2,LOC107713870,LOC107734387,LOC107683482,LOC107687536 coding downstream 674437 8530108 ~ 8669130 (-)
LOC122330247 LOC107588032 coding upstream 409291 9756148 ~ 9766264 (-)
dipk2ab dia1b,cunh3orf58,c3h3orf58,LOC107687522,LOC107739121,LOC107588034,LOC107741829 coding upstream 731944 10078801 ~ 10108057 (-)
chst2b chst2b,chst2,LOC107566295,LOC107675126,LOC107588116,LOC107739140,LOC107687551,LOC107741833 coding upstream 827744 10174601 ~ 10177491 (-)
pcolce2b pcolce2,pcolce2b,LOC107588030,LOC107675309,LOC107687553,LOC107566300 coding upstream 876238 10223095 ~ 10235432 (-)
acbd5a acbd5,LOC107739116,LOC107758260,LOC107675165 coding upstream 897485 10244342 ~ 10255386 (-)
G161758 NA non-coding downstream 297660 9045613 ~ 9045907 (-)
G161751 NA non-coding downstream 309284 9031218 ~ 9034283 (-)
G161737 NA non-coding downstream 450200 8893148 ~ 8893367 (-)
G161734 NA non-coding downstream 456353 8886948 ~ 8887214 (-)
G161725 pfkpa,LOC107687511,LOC107588098,LOC107716838 non-coding downstream 547730 8793901 ~ 8795837 (-)
G161833 NA non-coding upstream 74833 9421690 ~ 9422031 (-)
G161839 NA non-coding upstream 83433 9430290 ~ 9461957 (-)
G161878 NA non-coding upstream 500536 9847393 ~ 9847860 (-)
G161973 NA non-coding upstream 788590 10135447 ~ 10158815 (-)
G161981 trpc1,LOC107687523,LOC107588031,LOC107739119,LOC107675135,LOC107758253 non-coding upstream 864294 10211151 ~ 10214096 (-)
LOC122330139 lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738 other downstream 1260637 8038747 ~ 8082930 (-)
pard3aa pard3,LOC107713921,LOC107734328,LOC108431315,LOC107692754 other downstream 1505046 7390095 ~ 7838521 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other downstream 2246728 7090514 ~ 7096839 (-)
G161327 LOC107713878 other downstream 2338159 6945186 ~ 7005408 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other downstream 2873466 6396171 ~ 6470101 (-)
G161893 LOC107563058 other upstream 584438 9931295 ~ 9932802 (-)
G161992 NA other upstream 933940 10280797 ~ 10286608 (-)
myo3a myo3a,LOC107687530,LOC107675224,LOC107739129,LOC107758395,LOC107570047 other upstream 1019316 10366173 ~ 10436463 (-)
zgc:174877 zgc:174877,LOC107687531,LOC107709772,LOC107588023 other upstream 1104702 10451559 ~ 10458476 (-)
dpp6a dpp6a,dpp6,LOC107755713,LOC107664663,LOC107655790 other upstream 1319654 10666511 ~ 11010248 (-)

Expression


Co-expression Network