LOC122330247 (LOC107588032)


Basic Information

Item Value
gene id LOC122330247
gene name LOC107588032
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 9756148 ~ 9766264 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043227113.1
gaaaaaaatctagtGTTGCAATCACCACTGAGGTTCTCGGTTCTCAGGAAGCATTGTGTGATTCATGAGGTGCATATTTTTCACTTATAAACGGATATGACAGACTTGCTGTGGTCAGATCATCCAAAATGGATTCAAATCCACCAGTTTGCAGGTTAAGAAACCACGTACTAAGTGCATGTTTTGCTTGGATTACATTCTGCCTGATTGTATGGCAACTGAATTGTTTCCAAATCGGAACATTTCATCTCCCTGCCCCTAAACCATTTTCTCGAAAAAATTATTCATCACCAGTATCAGTGTTTGACATGGGAATCAGTGATGaggagtgggaaagactacagAAGGCTCTTAACTGGCCCGGTCCAGATCAACTAATCACTCAGCTGAATCTGACCACAAGTCCAGTCCACTCGACATTCTCTGTTGTGGAACCCAAAAACAGTTACAAAGTAGGAGAAAACATCTCCGTTATTATCACAGCTAGAGACCACAACAAGAACCCGAAAACATATGGAGGAgattttttcaaagcaaagctTTTCAATTCAGAGCTAAAGGCGAGTGTGTACGGGGAGGTTGTGGATCATCGTAATGGGACTTACTctgttgttcttcttcttccctGGGAAGGTCAGGCACAAGTTTTTGTGCGTCTTGAGCACTCCAGTGAAGTTGTGCAGATTCTTAAAAAATACAGGGAGTCTTCATTTCCACGCAGCCACTATAATGGCCACTTTGAAGGGCTAGGACCAGACAAAAAGATAATAAGGGAAGTAGTACAATGTAATATTAAGTGGGGTGCAGAAGGAAACTGGAGAAGAGGTAACTGCTGTTGTGAGTATAAGGATATTAAAACAGGAACCCTGTGGCAATGTGAGAGACCCAAGAAACTTCCCTGTAACAAACTGGTTCATCACTCAAAAGGAAGTTTGGAAAACCCATTAAATCCATTTGAGAAGGGTCTTTTTGCAAAGGCATTAACAAATGTTCCCATTACTGGAGACAAACAAGTCATCAATATCCTTCCCAACACTGCAGGCATTGgcAAAACGGAGAAATGCAGATCTGGCTTGACAACACCAGTTCCAGCGGGGTTCTATTTCAAAGATGTTTGGACGTCTTTTGTATGCAACACTCAACAGTTTAATTCTTCAAAAATGTGGAACTGTCTACAAAATAAGATTGTCTACATGATGGGAGACTCCACCACAAGGCAGTGGTttgaattttttgaaaataaagtgcCAGGCATAAAAAGAATGGACCTCCACACTCCTCGTTTGGCGGGACCCCTGATGGCtgtggaattaaaaaataatatcattattcACTGGAGGCCTCATGGTGTTCCTTTGCGGTTTACTATAATGCCTATGACCGACCTGCATTATATCGCCAATGATATTGATAAAATAGCCGGTGGTCCTCATGTAGTCGTTGTCTTTACACTCTTTGCCCACCTGGTGTTTCAtccaataacattttatgttcatAAAGTGGCCAAAATCCGTCAGTCTGTTGTAGCGCTGCTAAGTCGCGCGCCAGAGACCACCGTCATCATCAAGTCTGGAAACACTGCAGGTCTAAAGGACATTTTTCAAAGTGACTGGTATGCGGTGCAAGAAAACATAGTGATGAAAGAGATGTTCAGAGATATTGATGGAGTAATCTACTTTGATGTCTGGCAGATGACTTCCTGTCACTATCTCACTGAAAATGTTCACCCAGGACCTGTTGTCATAGCTAATGAAATCAACATGTTTCTCTCATATGTCTGTCCTGcctaaaaaacaatatttgttttttcatctaaagcataaaataaaaatacgttGCATTAGAAACTTAATAATATTAACttttgtgtaaatatacatttagtaaataaagtgcttttgtatGTTATAATAATCTGTACATTAAATGCCTTTTATGTTGCCAAAATACTTTTAAGCATG
>XM_043227114.1
ATCATCAAGCctagtttatttcagttaactgaGGATTATATTCACGAGGCAGGAAGTTGTAGCAGAGGAAGCAATCACAGTTCATGCAGAGGGTGCATATTTTTCACTTATAAACGGATATGACAGACTTGCTGTGGTCAGATCATCCAAAATGGATTCAAATCCACCAGTTTGCAGGTTAAGAAACCACGTACTAAGTGCATGTTTTGCTTGGATTACATTCTGCCTGATTGTATGGCAACTGAATTGTTTCCAAATCGGAACATTTCATCTCCCTGCCCCTAAACCATTTTCTCGAAAAAATTATTCATCACCAGTATCAGTGTTTGACATGGGAATCAGTGATGaggagtgggaaagactacagAAGGCTCTTAACTGGCCCGGTCCAGATCAACTAATCACTCAGCTGAATCTGACCACAAGTCCAGTCCACTCGACATTCTCTGTTGTGGAACCCAAAAACAGTTACAAAGTAGGAGAAAACATCTCCGTTATTATCACAGCTAGAGACCACAACAAGAACCCGAAAACATATGGAGGAgattttttcaaagcaaagctTTTCAATTCAGAGCTAAAGGCGAGTGTGTACGGGGAGGTTGTGGATCATCGTAATGGGACTTACTctgttgttcttcttcttccctGGGAAGGTCAGGCACAAGTTTTTGTGCGTCTTGAGCACTCCAGTGAAGTTGTGCAGATTCTTAAAAAATACAGGGAGTCTTCATTTCCACGCAGCCACTATAATGGCCACTTTGAAGGGCTAGGACCAGACAAAAAGATAATAAGGGAAGTAGTACAATGTAATATTAAGTGGGGTGCAGAAGGAAACTGGAGAAGAGGTAACTGCTGTTGTGAGTATAAGGATATTAAAACAGGAACCCTGTGGCAATGTGAGAGACCCAAGAAACTTCCCTGTAACAAACTGGTTCATCACTCAAAAGGAAGTTTGGAAAACCCATTAAATCCATTTGAGAAGGGTCTTTTTGCAAAGGCATTAACAAATGTTCCCATTACTGGAGACAAACAAGTCATCAATATCCTTCCCAACACTGCAGGCATTGgcAAAACGGAGAAATGCAGATCTGGCTTGACAACACCAGTTCCAGCGGGGTTCTATTTCAAAGATGTTTGGACGTCTTTTGTATGCAACACTCAACAGTTTAATTCTTCAAAAATGTGGAACTGTCTACAAAATAAGATTGTCTACATGATGGGAGACTCCACCACAAGGCAGTGGTttgaattttttgaaaataaagtgcCAGGCATAAAAAGAATGGACCTCCACACTCCTCGTTTGGCGGGACCCCTGATGGCtgtggaattaaaaaataatatcattattcACTGGAGGCCTCATGGTGTTCCTTTGCGGTTTACTATAATGCCTATGACCGACCTGCATTATATCGCCAATGATATTGATAAAATAGCCGGTGGTCCTCATGTAGTCGTTGTCTTTACACTCTTTGCCCACCTGGTGTTTCAtccaataacattttatgttcatAAAGTGGCCAAAATCCGTCAGTCTGTTGTAGCGCTGCTAAGTCGCGCGCCAGAGACCACCGTCATCATCAAGTCTGGAAACACTGCAGGTCTAAAGGACATTTTTCAAAGTGACTGGTATGCGGTGCAAGAAAACATAGTGATGAAAGAGATGTTCAGAGATATTGATGGAGTAATCTACTTTGATGTCTGGCAGATGACTTCCTGTCACTATCTCACTGAAAATGTTCACCCAGGACCTGTTGTCATAGCTAATGAAATCAACATGTTTCTCTCATATGTCTGTCCTGcctaaaaaacaatatttgttttttcatctaaagcataaaataaaaatacgttGCATTAGAAACTTAATAATATTAACttttgtgtaaatatacatttagtaaataaagtgcttttgtatGTTATAATAATCTGTACATTAAATGCCTTTTATGTTGCCAAAATACTTTTAAGCATGC
>XM_043227115.1
TGAGGTTCTCGGTTCTCAGGAAGCATTGTGTGATTCATGATTTGCAGGTTAAGAAACCACGTACTAAGTGCATGTTTTGCTTGGATTACATTCTGCCTGATTGTATGGCAACTGAATTGTTTCCAAATCGGAACATTTCATCTCCCTGCCCCTAAACCATTTTCTCGAAAAAATTATTCATCACCAGTATCAGTGTTTGACATGGGAATCAGTGATGaggagtgggaaagactacagAAGGCTCTTAACTGGCCCGGTCCAGATCAACTAATCACTCAGCTGAATCTGACCACAAGTCCAGTCCACTCGACATTCTCTGTTGTGGAACCCAAAAACAGTTACAAAGTAGGAGAAAACATCTCCGTTATTATCACAGCTAGAGACCACAACAAGAACCCGAAAACATATGGAGGAgattttttcaaagcaaagctTTTCAATTCAGAGCTAAAGGCGAGTGTGTACGGGGAGGTTGTGGATCATCGTAATGGGACTTACTctgttgttcttcttcttccctGGGAAGGTCAGGCACAAGTTTTTGTGCGTCTTGAGCACTCCAGTGAAGTTGTGCAGATTCTTAAAAAATACAGGGAGTCTTCATTTCCACGCAGCCACTATAATGGCCACTTTGAAGGGCTAGGACCAGACAAAAAGATAATAAGGGAAGTAGTACAATGTAATATTAAGTGGGGTGCAGAAGGAAACTGGAGAAGAGGTAACTGCTGTTGTGAGTATAAGGATATTAAAACAGGAACCCTGTGGCAATGTGAGAGACCCAAGAAACTTCCCTGTAACAAACTGGTTCATCACTCAAAAGGAAGTTTGGAAAACCCATTAAATCCATTTGAGAAGGGTCTTTTTGCAAAGGCATTAACAAATGTTCCCATTACTGGAGACAAACAAGTCATCAATATCCTTCCCAACACTGCAGGCATTGgcAAAACGGAGAAATGCAGATCTGGCTTGACAACACCAGTTCCAGCGGGGTTCTATTTCAAAGATGTTTGGACGTCTTTTGTATGCAACACTCAACAGTTTAATTCTTCAAAAATGTGGAACTGTCTACAAAATAAGATTGTCTACATGATGGGAGACTCCACCACAAGGCAGTGGTttgaattttttgaaaataaagtgcCAGGCATAAAAAGAATGGACCTCCACACTCCTCGTTTGGCGGGACCCCTGATGGCtgtggaattaaaaaataatatcattattcACTGGAGGCCTCATGGTGTTCCTTTGCGGTTTACTATAATGCCTATGACCGACCTGCATTATATCGCCAATGATATTGATAAAATAGCCGGTGGTCCTCATGTAGTCGTTGTCTTTACACTCTTTGCCCACCTGGTGTTTCAtccaataacattttatgttcatAAAGTGGCCAAAATCCGTCAGTCTGTTGTAGCGCTGCTAAGTCGCGCGCCAGAGACCACCGTCATCATCAAGTCTGGAAACACTGCAGGTCTAAAGGACATTTTTCAAAGTGACTGGTATGCGGTGCAAGAAAACATAGTGATGAAAGAGATGTTCAGAGATATTGATGGAGTAATCTACTTTGATGTCTGGCAGATGACTTCCTGTCACTATCTCACTGAAAATGTTCACCCAGGACCTGTTGTCATAGCTAATGAAATCAACATGTTTCTCTCATATGTCTGTCCTGcctaaaaaacaatatttgttttttcatctaaagcataaaataaaaatacgttGCATTAGAAACTTAATAATATTAACttttgtgtaaatatacatttagtaaataaagtgcttttgtatGTTATAATAATCTGTACATTAAATGCCTTTTATGTTGCCAAAATACTTTTAAGCATGC

Function

NR:

description
PREDICTED: NXPE family member 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043227113.1 False 1961 mRNA 0.40 9 9756149 9766264
XM_043227114.1 True 1985 mRNA 0.40 9 9756148 9765515
XM_043227115.1 False 1855 mRNA 0.40 8 9756148 9766236

Neighbor

gene id symbol gene type direction distance location
zic1 zic1,LOC107588038,LOC107557563 coding downstream 409291 9343567 ~ 9346857 (-)
agtr1b agtr1b,LOC107681633,LOC107588039,LOC107739124,LOC107717774,LOC107557561,LOC107663725 coding downstream 522201 9224012 ~ 9233947 (-)
cpb1 cpb1,LOC107687549 coding downstream 532330 9218824 ~ 9223818 (-)
fzd8a fzd8a,fzd8,LOC107739125,LOC107717597 coding downstream 700743 9052785 ~ 9055405 (-)
klf6a klf6a,klf6,LOC107717335,LOC107687512,LOC107739128,LOC107663727 coding downstream 876016 8873506 ~ 8880132 (-)
dipk2ab dia1b,cunh3orf58,c3h3orf58,LOC107687522,LOC107739121,LOC107588034,LOC107741829 coding upstream 312537 10078801 ~ 10108057 (-)
chst2b chst2b,chst2,LOC107566295,LOC107675126,LOC107588116,LOC107739140,LOC107687551,LOC107741833 coding upstream 408337 10174601 ~ 10177491 (-)
pcolce2b pcolce2,pcolce2b,LOC107588030,LOC107675309,LOC107687553,LOC107566300 coding upstream 456831 10223095 ~ 10235432 (-)
acbd5a acbd5,LOC107739116,LOC107758260,LOC107675165 coding upstream 478078 10244342 ~ 10255386 (-)
pdss1 pdss1,LOC107739114,LOC107758317,LOC107675251,LOC107687541 coding upstream 528512 10294776 ~ 10302071 (-)
G161839 NA non-coding downstream 294191 9430290 ~ 9461957 (-)
G161833 NA non-coding downstream 334117 9421690 ~ 9422031 (-)
G161758 NA non-coding downstream 710241 9045613 ~ 9045907 (-)
G161751 NA non-coding downstream 721865 9031218 ~ 9034283 (-)
G161737 NA non-coding downstream 862781 8893148 ~ 8893367 (-)
G161878 NA non-coding upstream 81129 9847393 ~ 9847860 (-)
G161973 NA non-coding upstream 369183 10135447 ~ 10158815 (-)
G161981 trpc1,LOC107687523,LOC107588031,LOC107739119,LOC107675135,LOC107758253 non-coding upstream 444887 10211151 ~ 10214096 (-)
G161985 NA non-coding upstream 523911 10290175 ~ 10294158 (-)
LOC122329558 NA non-coding upstream 562405 10328669 ~ 10341363 (-)
LOC122330139 lyrm4,LOC107692762,LOC107570464,LOC107653796,LOC107713738 other downstream 1673218 8038747 ~ 8082930 (-)
pard3aa pard3,LOC107713921,LOC107734328,LOC108431315,LOC107692754 other downstream 1917627 7390095 ~ 7838521 (-)
ralaa ralaa,rala,LOC107565693,LOC103042957,LOC108268083,LOC101477841,LOC107655676 other downstream 2659309 7090514 ~ 7096839 (-)
G161327 LOC107713878 other downstream 2750740 6945186 ~ 7005408 (-)
G161224 lancl2,LOC107561957,LOC107693471,LOC107566172,LOC107655705 other downstream 3286047 6396171 ~ 6470101 (-)
G161893 LOC107563058 other upstream 165031 9931295 ~ 9932802 (-)
G161992 NA other upstream 514533 10280797 ~ 10286608 (-)
myo3a myo3a,LOC107687530,LOC107675224,LOC107739129,LOC107758395,LOC107570047 other upstream 599909 10366173 ~ 10436463 (-)
zgc:174877 zgc:174877,LOC107687531,LOC107709772,LOC107588023 other upstream 685295 10451559 ~ 10458476 (-)
dpp6a dpp6a,dpp6,LOC107755713,LOC107664663,LOC107655790 other upstream 900247 10666511 ~ 11010248 (-)

Expression


Co-expression Network