RNA id: TU239150


Basic Information

Item Value
RNA id TU239150
length 4422
RNA type TUCP
GC content 0.40
exon number 3
gene id pard3aa
representative False

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 7390095 ~ 7838521 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAACCGGCTGGCACCCAGCAACCATGACCGGATACAGCGACTACGACAAGAGTTCCAGCAAGCCAAGCAGGAGGAGGAACCAGATGACCGTCGTCGATCCTACAGCTTTCAACAACAACAGAGGacCAACACGGGTTCTTATACACCCACGGGGCGGCACTCGGTTTCTGTCGAGGACCAAAtgcagaaacagagagaggacagagactCTTTCACACAAGCCCAGAGGCAATACAACTCCTTACCGCGACAACCACGCAAAAACCCAAGCACCGTGTCTCAAGACTCTTGGGATAAAGTCTATCCTCCCGGCGAAGTCTTTCAGTCCGCCAAAGAGAACCCGCGTTACTCCAGCTACCAGGGATCCCGCGCTACGAACGGCTACCTGGGCCCTGCCGCCTCGGGCCTGAACGCTCGCGTCCTCCTCGAGACTCAAGAGCTCCTGAGACAGGAACAGAGGCGAAAGGAGCAGGAGGCTAAAACCAAGCTACCTACAATGGAGGAGACACCAACTTCAAGCCAAAAGCCTGTTCCTGCTCCACCCAAAGGCCCCTACCGACAAGACGTGCCACCCTCGCCCACCCAACTCGCCCGGCTCAACCGTCTACAGACCCCTGAGAGCCGCCCCTTCTACTCCTGAGACGACAGATCAAAACTGTAGGAAACTGTATGACAGCAATAATACTGAATGGAGAAAGACAGGGCTATAACATGGAGACTGCGTGGAGGATTCTGGGTAAATCgttgtttttttactctttGTACACACTGAAGATCTTCGTCAACTATCCATCTCACATTCCggcttttgaaaaatgtgtatgtgtttgttgaATTCATTGACGTTATGGCACTAGGCACTCTTGACAATCACAGGACAGTCGCCCAAGGCTTTGATCCATGGTTGTTTCCACCGTATTGTGACCTACAGATCTTGTTTTTGTCAGGTGTGCTGAGAAAAACAAGCAGGTGGGTAAATTTAACCACACCTGTCAGAGACACGTCTAGGTcttatttcaaaagaaaaaatgcaatatttagcTATAAACCTAAGCTTGCTCCTAGGTCTGTAAAGTTTGttgtttacactttatttcaatagtcCTCTTTAGACATTCTACAAACAGTAAatactttgcaactacatgtcaactagcagtcattagagtattagtagactgcctacttaatattttctaacactttatttttagaaatattccaCAGCATACTGAATATAAGAAACTTTGCAGTGATTGTCAAATTATTCTATAAatcctaacagtctactctgtgtgttagtagacatgtagttgtaaATTAATGAGTTATTTAAAGTAAGTACAGTGTCTAAAGTGGACTTAGTTTTTCCTTGCACTGAGATATTTTCATCTATAGCATCCTGCTCATTACGttcttttatgtatttagaaacaaattaagaatttgcTCCCACAacttgtataaatatttaacaatttaaacatACCCTCATTATTTTCGCTGAGAACGAGATTTTTGATGTGTTGCGCTAACGAGAGTTTTGTGGATGTAGGTGTACAGTGTTCAGGGTGAGTGTACTCCAGCAGTGTAGCTGAACTCGGCTAATAGAGTGCAGAAGGGTTATGACCCCACAACCCTCCGACTCTCTGCTACCGAAACCCCCATTAACCCATCATACTTTTCAATCTCTCCTCGTGCGTCGCCTCCCATCTCCACCCACTTCATAAGTGGTCCTCCTGATTTTCCTCGAGTTAGTGGCCTCTGTTCCTACACTACTAAAATagtaaatgtacagtaaattgacaaaaattcATGAATTAGAGAATTCTGCTTTTCACATCTCGTTTAAAATGCTGGCCACGCTTTATTTTGCTAgttcactttagacattctactaactacaTGTGACTTtctaactacatgtcaactccATGCcagctaattctcattaatCTCTAACTACCCGACTCTCAGAGCAGACTGTGAGGGTAGGTTTAGTAGAAGAAGCTGACATATACTTGTGAAGTTTcttatgttgtggacccatcagaataaaaagtttgaagttattaaacagacagtctactaatactctaatgactactagttgacatgtagttgcaaagttacttctagttagtagaatgtctaaagtttCCAAAATCCTCCAGAACAGCAAAAAGTTTGGTTTGGTGCTACTAGTGGAAATAGTTCACCTTTTTAAGTCAACGTGAAGCAAAGTTCTTCAATAGCTATGATTTTATCCTCCTATTTTTATGGTAACTTCGTAATACTGCGTGAAGAAACTCTGGACAGAAACAccattataaaaatgtgcataaaaaggGAATGATTTCTTTCTCTAATAAGAAACCCATTTAACGCATAAATATTGTAGCGTACTTCAAAAAAGTCATGTGGCTTTGCCTCAGCAGTGCATGTTATTGCGTAACTGAACTAACCAGCACATCGTTCTCATCACAAACCGCCTCAAATGCTGTTTTAGCCATTCGAAAATGCCTGAAACAAACTCATCGGAATAGTTTGGAATAATAAAGTTCTTTGCATGACTGCGTTCTAAAAAATCAGGTAACAAAGAAAACATCATGACGCGTGTTATGGCGTTTCGTCCATGTGCTCTGAGACACAAGACAAGTCATTTATTACGTAAGCTTCCCTGCTTGCTGCAACTTTCActgatgaaagcaatgttttatttgcaaatgtgaccctggagcacaaaaccagtctcaaatgttcatttttcaaaactgGTATTTGTACATCATATAAAAGCGGAATAATTAAGccttccattgatgtatggtttgttaggatgggATAATATTTGACtaagatgcaactatttgaaaatctggaatctgagggtgcaaaaaaatcattatattgagaaaatcacttttaaagttgtctaaataAAGTCCTTTGCAATGCATATAACTAatcaaattcacaaaatatattcatggaacaCTATCTTTGcctaatataatattataaaaagaaataatttaatttaagtggTTGGATGGGAGGGGCTTAAAATAGGAGGGATTGATGATGTCATCCAAAATGGAAAATCGTCTTAAATAATGgagcatgtttttacattttgatgaaagacGATATTacaatgttgtttattttggatgatgCATAACACCAGGAACGTGTTAAGTTTAAAGCTTCCTATCAAGACTGTATACGTGTGGCTTCCaggcagtgtgtttgtgtgtgtttgttacttTTATGACTCTGACCTCTGCCATCATACAAACCGTCTTTGGTTTCAACGGCTCAAGCAGAGACTAGCTCTGTTCAGCACTTTAGTTTTTTATCGCACGGATCACCAACACAACACAGCTCAGGTTACAGCTGACGGATACAGCCCAGAAcctgtttaaaagaacacttCACCTAGTGATAAAAAATTATGTCTCTCTCTGccatgtccttccaaacctgtttgccttacttcatgtatatatatatatatataaaagaaagtcCATTCTTGAATCAGAAAAAGTCTTTTTCACCatgactgtccctttaaatgcagCTGCCTTTTAACTGTTCATTCAAAAATCCAAACCTCTCTAACAAAACGTCATGTGACTTTTATGCGCgctgtatgtttttttgatattcgtgcgtgtgtgtgggttttGCGTGGGATTGTGGATCACCAGTGCCTGTAACATGACTCTCTGTTGTCTATGAACTGTATCTTGGCAGGCACATGAAACACTTGGCCACATTTTTCAGAGCTAAAGCTAAAAGAGCTCAATAAGCTCTCACAAAAGAGAAAGCCAGGCCCATTGACCGGTGTACTTTCCTCCATATCTCTTCCTGTCGTCTCGCTCCGTCTCGGATCCATTCATTGTGGAAAATGTTCAGCATATCTCCTCTATTCTTCTCTGACTTCGGTACTTCCTCCCAAAATTGTTCTGGGTTCTGTGGTACAACATGATGTGCTTCTAATATTGTTTCTACAAACAGACATTTCCAGAACagcagctgttttctttttttttttttttgtgctggcTGCATGAGACGTTCTTGACAGGAAGTGCCTGtaaagagtgatttttttttttttttgtatgttaaaaGTTTAAGGTGGCGccaaatgcacatattttttaaaataaaattattgtattcCTGTGTCTTTCTCTGATCACACagcatttgttttaatcattaaaagaaagcaaagattaatctgcacattttaatgtatttgtatgaCATTTTGTCGTCTGTGTGTATGTCGTAGGTACTATGGTGTTTGATTGCTGTATGCACAGTGAAAATGGTTTTTACACAAAGTTTTTACCTGATGTGTCAAAATATACACAAAGCTTCTCTGTACATATCAAATCTATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239002 lncRNA downstream 286049 7103152 ~ 7104046 (-) True G161358
TU238999 lncRNA downstream 286137 7103152 ~ 7103958 (-) False G161358
TU238997 lncRNA downstream 286137 7103303 ~ 7103958 (-) False G161358
TU239000 lncRNA downstream 286296 7103152 ~ 7103799 (-) False G161358
TU238994 lncRNA downstream 288012 7101252 ~ 7102083 (-) True G161356
TU239165 lncRNA upstream 146412 7553095 ~ 7553602 (-) True G161481
TU239171 lncRNA upstream 429806 7836489 ~ 7837112 (-) True G161487
TU239178 lncRNA upstream 451652 7858335 ~ 7859305 (-) True G161491
TU239260 lncRNA upstream 549718 7956401 ~ 7956637 (-) True G161546
TU239252 lncRNA upstream 559241 7965924 ~ 7968043 (-) True G161538
XM_043226231.1 mRNA downstream 157834 7171518 ~ 7232261 (-) False nrp1a
XM_043226230.1 mRNA downstream 157835 7171518 ~ 7232260 (-) True nrp1a
XM_043226233.1 mRNA downstream 157836 7171518 ~ 7232259 (-) False nrp1a
XM_043226232.1 mRNA downstream 157836 7171518 ~ 7232259 (-) False nrp1a
XM_043226624.1 mRNA downstream 221904 7141975 ~ 7168191 (-) False itgb1a
XM_043225636.1 mRNA upstream 433247 7839930 ~ 7855734 (-) True cul2
XM_043226941.1 mRNA upstream 462141 7868824 ~ 7914978 (-) False rreb1a
XM_043226935.1 mRNA upstream 462141 7868824 ~ 7914978 (-) False rreb1a
XM_043226940.1 mRNA upstream 462141 7868824 ~ 7914978 (-) False rreb1a
XM_043226936.1 mRNA upstream 462141 7868824 ~ 7914978 (-) False rreb1a
TU238971 other downstream 293256 7090532 ~ 7096839 (-) False ralaa
TU238949 other downstream 384687 6945186 ~ 7005408 (-) False G161327
TU238957 other downstream 422496 6945186 ~ 6967599 (-) True G161327
TU238790 other downstream 919994 6396171 ~ 6470101 (-) True G161224
TU238691 other downstream 1269208 6100744 ~ 6120887 (-) True LOC122330195
TU239703 other upstream 2524612 9931295 ~ 9932802 (-) True G161893
TU239863 other upstream 2874114 10280797 ~ 10286608 (-) True G161992
TU239881 other upstream 2989401 10396084 ~ 10413468 (-) False myo3a
XR_006247939.1 other upstream 3044876 10451559 ~ 10458476 (-) False zgc:174877
XR_006247941.1 other upstream 3047315 10453998 ~ 10458476 (-) False zgc:174877

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013810 True 2867 lncRNA 0.35 2 NC_007124.7 28427477 ~ 28444818 (-)