RNA id: XM_043226941.1


Basic Information

Item Value
RNA id XM_043226941.1
length 7798
RNA type mRNA
GC content 0.46
exon number 11
gene id rreb1a
representative False

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 7868824 ~ 7914978 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtgtgtgtgtgtgtgtgggatgcttgtgtgtgtctgcagctTCAGTAACACACGTCCCCTTGGAGACTAGAGCAGGAGCAACACGTGATACTCCGCCTTACTTATCAGCTttagaggagagagagagacgcggTGGGAGGAAAACGAAATAAGCGTTTTCCTCTCTCCTCCCTAAAGCATCTCGGCGTGGGGGGAACTCGGGAGAGTGGGGAACTCAAACGCAAAGTTAACGAACTTTGCACATCTTTTGCAAACGCCATTTTGATTCCTCTCCGGAACAACTTTTGCagcttctttctgttttttttttttctctctctctcctcagctcatcatcaccatcatcaccatGTCTCGGCGAAAGCAACCCAACCCCAACAAAGTCAAACtTATGGAAAATTCAACAGAGGAGACAAGAACGGAATCTGCAAAGTGCACCCTATCTAGGGAGGAGGCGGAGCAAAGCGATGAGCGCCAGAGCCCCGCCCCCACaggaacacaaacaaaacacacagGAAGCCAAAGATGACAGCGGGTGTATCACCTGTCCACTGTGTGATAAGAGCTTTCAGACCCAACACCAGCTCACCATGCACATCCGCCAGCACAACACCGACAGCGGGACTTCGGACCACTCTTGCAGTATCTGCGGGAAGTCTCTGAGCTCGGCTAGCTCTCTGGATCGTCACATGCTAGTGCACAGCGGAGAGAGACCCTACGAGTGCTCTGTGTGCCATCAGACTTTCACCACCAATGGTAACATGCACAGaCACATGAAGATCCATGAGAAGGACTCTGCTAGCTCCATCCCCAGCAGTCCGACTCTGTCTCCACCTAAACGAAGACGTCACTCTGCAGCCAAACGCAAACTAAGCCACGATGAAGACATTGAGAAGTCCGAGGAGACAACCAGCAAAAAGGTCAAAGAGGATAACATTGTAGATGAGCAGAGTTTGAATAAAGGACAGGAAGAAGTCTTGACCTGTCCTATCTGCTTCAAGACCCTCACCTGCAGAAACGACTTTGATGCCCACATGGAGACCCATCCTGACACTACACTGAGATGTGATTTATGCTGCATCTCGTTCCGCACACACCGAAGTTTGCTCCGCCACAATGCAGCTACCCATAAGCAGCTACCCACAGACCCCAACGGACGACCCTTTATTCAGAACAACCCATCCATCCCTCTTGGTTTTAATGATCTAGCTTTCATTGACTTTTCATGCCAGAAGTTCCCGCAAATTGCCCAGATTTGGTGTGAAACCAACCTTCGGCGTTGTACTGGCAAATTCCATCGCTTTGTATGTGACACATGCGATAAGGCATTCCCTCTCAGCTCTGCTCTAGACTTGCATAAAGCCTCGCATGAGACTTCCAGTGGCACCCAAGAGACTACTTCACACTTAACTATGAAAGATGAGCTTCCCACTCCTGAGAAAAGTAGCTTCATGGACTCTTTGGGCTTGCAGCACATCTCTCAGGTTAAGCCTGCCCCCTCAGAAGAGGATGTCCAGCAGGCCAAGCTTGATAGTATTCGGGTTATCCACGTAGAGCAAAATCAGTCCTCTGTACCTCAGGAGGCAGGCATTGTTGGAGGGGTTAACCTGTCTCTTGTAGACCCAACGACTCTTCATGGTCTGTCCCATCAAGACGCTCTCAAACTGCTGTCCCTTCAGCCCTTCCAGACTGGTTTTCTGGTGCAGCCAGATGGTGGTATGGTAGTGAAACCAGTTTGTGGTGAATCCAACGTGGAACTCGCTGATATACAGCAAATAATCAAAGTAGCTTCTGCTGCTCCTAACCAGATCACTCTGCCACCTTTATCCAAGGCGCCTTGTAGTGCTATGCAGTCGGGCTACAAGCAGATGCCTCCACTCAAGCCAAAACCCTTGGTGGCTCCCAGAACCAGTATGGTAGCTTCAACTCCTCCACCCCTATTGAACACCCAGCAAGCTTCCCTGGGCTGTATCAGTCCTAGCCTCCCACCCCCTGCCAGTCATCCTCTCAAAACAGTTCGGGACCTCTCCCCATCTTCCTCGTCCTCTTCTGCCAACAACCACGCTCCGGCAGAGAGGATACAAATGGAGGCAGAGTGCATGGGAGATGCCCATACCCCAATGGACATGGATGAAAGACATATCAAACAGGAGAACGGCAAATTAGAAGAGACCACTGGAAAAAAGGGAACATCTCAAAAGGGCTCGTACCCCTGCCGATTTTGTGACCAGGTCTTTGCATTTTCTGGTGTACTGCAGGCACATATGCGATACCATTTGGGCATCCTACCCCACCAATGCAATATCTGCGACTATGTTGCCCCTGACAAGGCAACGCTAATCCGTCATTTGAGGACGCACAGTGGTGAGCGTCCCTATGTCTGCCGGCTCTGTCATTACCCGTTTACTGTCAAGGCTAACTGTGAGCGCCACCTTCGCAAAAAGCACATGAAAAACAATCGCAAGGAGATTGAGAAAAACATTAAGTATGTTACCTCGTCCACGTCCACAGCAGACGTACTGGAGCAGGCTGGAACTAATGAAACTACCTGTCGCTTCTGTGGGGAGGACCTAAAGACGTTCAGAGCCCTGCAGATACATTTGCGCACACACAACGGCTGCCAGCGAAAGCCATTTGAGTGCAAGCGTTGTGGTGCAGCTTTCCTTGCTAAGCGTAACTGTATCCATCACCTTCTGAAACAACATCCAGAGGTCCAAGAGCAGGATATTGAAGAGCACATAATCACTCTTCTAGCTGCATCAACCCAAAATAGCCCAAATCCATCTCCTCTCAATGGGGTTTCTCCTAGCACTGTAGTGCAGCCTATCAAAGTTGAAGACCTTAGCTTTTACAGTGTAGATATGGATCAACCTCTGGACTTCTCTAACAAAAGCCATGGGGGCAGCAGTGCCGGAAGTGCGAGTGGATCTCCTGGGATCAAAATTGAACCCGTCTCTTATGACTCTAGCATGGAACCAATTGACCTCTCTATTCCTAAGAATCCTGTGAAGAAGTTTAAACAAGACATTGAGGCCACATTGCCAAGAGAGGTTAAAAAAGAACAGTCCTCCATTAGCATACTTGCACAGGCTCTTCAAGCCGAGAAGTCCATTGATGAGAAGTCTCAACCTCTTGGATGCTACCAGGTCCCTGTTGCTTTGTCCTCTCTTACTGGTAGCACTAATGCTGCAGGAAGGCACTTGCGTTTAAAGCCCCTGCTTCCTAAACcttcctctgctgctgtgaAGGAGCTTCCACCACTAGCATCCATTGCTCAAATAATTTCCTCAGTTTCTGGTGCCCCTGACCTTCTTAAGCGGGATAACACTAATAGTCTTCAGGCTGATTCTGACACACATGGCAAGCAAGAATCACCAGATATTTTGACAGAAGAGCTCTCACTAGAGAGCTCAAAGAAGAGGACCAGGAAAAGGCCATCCAACAGCACAGCGAAGGAGAAACCTGTAATGAATGCCACAGACCCAAGTATTGATTTAGAGTCTAGTGGGGAGTTTGCTAGTGTTGAGAGGATGTTGGCAACCACTGATGCCAACAAGTTCAGCGCCTATCTTCAGACCAACACAATTGAGCTGGCAAGAAAAGGCGGGCAGCAGCCAGGTGCTAGTGACGAGAAAGAGGTGAAAGATGAGAAACACTTGCCAGCCCAGCAGACTGTTCAAGCCCAGCAGTCCAAAGGAAAGAAGAATGCATACTCAAATTCTGTGCAAAAGATGACTTGCCCCTTTTGTCCCAGAGTTTTCCCTTGGGCCAGCTCACTTCAGCGTCACATGTTAACACACACAGGTCAAAAGCCATATCCTTGTCCCCAGTGTGATGCCTTCTTCTCGACCAAGTCCAACTGTGAGCGACATCTTTTACGCAAACATGGCATTTCCAACAGAGTGCTTCGACGCAACGGTGCAATACCCAAGACTAAGGAAGCAGAGGAAGGCTCACCAGAGAGTGCAGAGAGCACATCTGAGACTGAGCTGCTTATGAGCGAGGCAATGGATCTCACAAGATCAGACTCAGAAAAGCCTGAAGCATCGGATGCTGAGAAAACTTCACCAGCTAAGCCGACAGAGGCAGCCGTGGTAGAGCCTCTTCCTCACAAAGAGGAGGAGGACCCAACAGCCCTAGAGACTTTGAAGCACAATGACCCAGAAAAAGAGGATGGCGATTCCCATAGCAATAAGACCCTTGACTTGACCTTTGTTTCTAAGCAAAAGGATTTCAAGATCACTGAGAAAGACCAGCCACAGTCCTCCCCTGCAGCAGATAGTGACGTGTCTGACAAAGCAACACCTCAGGAGGAGTCCAAATTCACCTGCAAAATTTGCAAGAAGATCTTCCGCTACGCTGCCACTTTAACCAGACATGAGAAAGTTCATCAGCTGGATGTAGCATCAGACTCCACTAATGGACCTGAACAAAGCCTCACGAAATCAGATGATCCAATTGTGCCTTGTGAAAATAAGAAAGAGGTTGCAGAGGAAGAGGTGGAGAGTGTAAGGAAGAGCACAGCAGAGAACGAGGGAATGGGCAGTGTGGGGGAGAGCGGATCTGAGGAGGATAAAGAGGAGAGGAGTGATGAAGAGGGAGCTGCAGCTGAACCAAAGAGTGCTGAGGGAGAGACCGAAGAACCTGGCAGCAAgccggacaagaggaaaaaggTGTGCAGTATATGCAATAAACGTTTCTGGAGCCTTCAGGACCTCACCAGACACATGCGTTCTCATACAGGAGAGAGGCCTTACAAGTGTCAGACATGTGAGCGAACTTTCACCCTCAAGCACAGTTTGGTCCGACATCAGCGAATCCACCAGAAACTCCGGGGAGCGGATAGTGACGGTTCATCTTGTGGGGTCACAGGTGGACCAGACGAGGACTGCTTTAGTGGGCGCTCAGCTAGCGAGAGCGAGTGCACACCCACCAGCACCAATCCACCCTCTGAGAACGAAAGTGAATTAACAGATACTGTGAAGGGGGAACCCACCTCacaggagaaagaggaggattGTCTACCCTGTGCGGAAGAGTTTAAACTAACCTCCAAGACAGGACCTGCATCAGCAACAGAGACACCCAAAGAACCTCCAGCAGAGAAACAAGCGTCGGATTCACCCACCGCATCTGACATAGAGCCGTCGGAGGGATTCATCCAAGGCTTACTGGAGATCCACACCAAGCCCACTACTGAGCAAATTTTGCCCACCCCCGAGCCGCCGCTGCTTGGCGTAGAGTGAAAAGCAACTCTTTCCTAGTTTAGCTTATCATGTGTTGAAATGTGCTGCAACAAGAAGCAGTGCCATATAACAAGTACATTTCAATGAGAAAAAAGAAGCAATGACTCTTTACAAGTGCCTTTCTACTTTTTTTGCTATATCTTTATCAGCATTTATCTTGGTCGAAAGTtgatttttatagtattttacaatgatcgttataatttttttggggggggttgtAATCCTGAGAAAACTACTTCAAGCAATATATGAACAAATTTGCATATTGTTTTGTACAGTTCAGAGGCAGCGGAATCCGTCTTATGAAAAGCAAGTATATGCCCTTATCCAGCGATGGCTGAGGACATGTTTCTACTGAGAGGCTTGTACCCAAGTGCATAACTGGAATACACAAAGACGACTTGTTCACCACAGGGcttctatgtttttgtttgtcctctTTAATTTGCCAGTTTCCTATTTTGTGTAATTCCTTTAATGACAGAGGCTTCCAgagttattgttttattacagaGCTCTGTTATTCTGGGTGCTGCGTTGTGTAAAGATGTTTTGGGGATACAGCCAAGCAAAAATTCAGAGAGTCATCCTCGGAAAGATGTTCAGCAGGTGTTGCATCAAGTATGGGCAATGTTTGCTCAAAACAGGTGATGAATGTCCAGCTGTGCTGATTGTGTCAATATCCTTAGATAGCATTAacgtttcttttcttttttttttggcacgaAAGGATGGTTTTTACTGAGGGAAGGcaatgtttttagatttaagGGCTTTTGAATTATGTCCCTCAAGCCCTGCCTCAGCTCCTTaagaatacaaaaatgaaaaaagcaaaattaCAGGAAGCCCATGAGTTATGTATCTGATGTACTTgacagaaatatgaaatgtgtaCCTGTGTCCAGGGTTACCGTCTTCCAAAAGCATCACTTTTTAAGCCTTACTCTTGCATCTGAGCATTTAGGCAGGCGTCTCACTTTCTGCCGGGCTCACGAACTAGAATTCTTGGTGTACTTGAACCCTGTCGCCCTGCTGCCTCCTGTCAGGATGTCGTCCTGCAGCGCTCCTCAACTAGGAGGACCCCATGTCAATCACAAGTTCTTTCTTTTGTAGTGTTGGATCTCTTTGACCTCTCAGTTTTATGAACTCGTAAAGAAACCTCAGACACAAACAAAGCAAACCTCAATGGGCATGGAGACTGTATGAAATTGTGTGGACTGGTAAGCATCTTCGATTATAGGTCTCCTTATTTCCTGGAGCAGTCGTTTTTCCCAAACAGATGCCTACCGATTGGCACGCGTCCGAAGTGCGATGACGGtatgcaaaaagaaaacaaacaaggaAAAGGAATATTGAACCAATAGTGGGGATGGGGAGAGAGTTTGCTCCTGATTGGATATCAGGTTGTGTGCGCCCCCTAGTGGTGAAGATCTAACATCTCTGCTCAGGCACGAGACTTGTAGTATTGGATGAACTTGAATGCAATTGCAATCGCTTTCTCTATCTGTGTATTCCGGGACTTCTGCTTCTCCCGATGCCTTTTCCTGGGTtcatgtgagtgtgttttgttgGTTGTGTAGAAGTGATTGGTTTCCTGGTAAGAATGCTCAcagattgtttttaatgtatttattatgacCCAGGGTCGGGTGAAGAAGTAAATGCGGAGAAGCCATGTATTAACACAATTATGCTGcataaaaaatgattcaaattcaATACTTAGCATCCCAGCTTTGATCTGGGTccttgattgattgattgatgatgatgatgataataatcaCTTTTGATCCGAAAGCTTTATGTAGAtctttgtatgcatttttttttagaatgtgtGGTCTGTTTCTGTtatctttattatattattattatgatgattattTCAGTTTGACAGAGAGATACAAGTTGTTTTCATTGATATATTCTTTTGCGTATAAAACTGTGAAATTTACTGTTATTCTGCTATGGGTGAATCTGTAGGGTAGTTTTGCATGATAACCTTTTTATGTTGttcagttttaatttctttttttttctgtttggccccactctgtctcactctcagggttcataacaaaaaaaggtttctcAAATCATCGTTTTTCTTGCAACAAAAAATTCTCTTCACCTATGATTTCTGAATATGTTGAATCGTCAATCACTACTTTTTTAGCACTTGACTGTGAATTCAAATGAACAGGGTGGAGTTATCAAATCCACATTCCACTCATGGGTTTTCTACAAGATATAGcctcctatttttttttttcccctggttttttattttaatcttccCTGTCTCTTTAGAAGAATGCAGAGGAATGGAGACCTGTCACTATTTGACGTGTTGACTGATGTAAAAGGGAGCTTTGTGTCGCTGCTACATCCCCAAAAATAATTCTACTGGACTTGAATGGAACCAGAATCACCAGAACATTTTTGGTACACTACTCTTGTTCTTCGAATGAGTGCTTCAGAATCAGAAATGTAAGCTGTTCTGTATCAAAACTATTCAAGcaataaagatatattaaagGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239178 lncRNA downstream 9519 7858335 ~ 7859305 (-) True G161491
TU239171 lncRNA downstream 31712 7836489 ~ 7837112 (-) True G161487
TU239165 lncRNA downstream 315222 7553095 ~ 7553602 (-) True G161481
TU239002 lncRNA downstream 764778 7103152 ~ 7104046 (-) True G161358
TU238997 lncRNA downstream 764866 7103303 ~ 7103958 (-) False G161358
TU239260 lncRNA upstream 41423 7956401 ~ 7956637 (-) True G161546
TU239252 lncRNA upstream 50946 7965924 ~ 7968043 (-) True G161538
TU239275 lncRNA upstream 118473 8033451 ~ 8033681 (-) True G161558
TU239311 lncRNA upstream 123782 8038760 ~ 8082867 (-) False LOC122330139
TU239313 lncRNA upstream 149753 8064731 ~ 8066583 (-) True G161591
XM_043225636.1 mRNA downstream 13090 7839930 ~ 7855734 (-) True cul2
XM_043225637.1 mRNA downstream 30303 7393185 ~ 7838521 (-) True pard3aa
XM_043226231.1 mRNA downstream 636563 7171518 ~ 7232261 (-) False nrp1a
XM_043226789.1 mRNA upstream 4574 7919552 ~ 7920991 (-) True ly86
XM_043226975.1 mRNA upstream 65845 7980823 ~ 8028824 (-) False LOC122330133
XM_043226978.1 mRNA upstream 98029 8013007 ~ 8028824 (-) False LOC122330133
XM_043226977.1 mRNA upstream 98029 8013007 ~ 8028824 (-) True LOC122330133
XM_043226976.1 mRNA upstream 98031 8013009 ~ 8028824 (-) False LOC122330133
TU239150 other downstream 462141 7390095 ~ 7406683 (-) False pard3aa
TU238971 other downstream 771985 7090532 ~ 7096839 (-) False ralaa
TU238949 other downstream 863416 6945186 ~ 7005408 (-) False G161327
TU238957 other downstream 901225 6945186 ~ 6967599 (-) True G161327
TU238790 other downstream 1398723 6396171 ~ 6470101 (-) True G161224
TU239703 other upstream 2016317 9931295 ~ 9932802 (-) True G161893
TU239863 other upstream 2365819 10280797 ~ 10286608 (-) True G161992
TU239881 other upstream 2481106 10396084 ~ 10413468 (-) False myo3a
XR_006247939.1 other upstream 2536581 10451559 ~ 10458476 (-) False zgc:174877
XR_006247941.1 other upstream 2539020 10453998 ~ 10458476 (-) False zgc:174877

Expression Profile