RNA id: XM_043226231.1


Basic Information

Item Value
RNA id XM_043226231.1
length 5348
RNA type mRNA
GC content 0.48
exon number 17
gene id nrp1a
representative False

Chromosome Information

Item Value
chromosome id NC_056722.1
NCBI id CM032091.1
chromosome length 21790128
location 7171518 ~ 7232261 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGGGCTTTGCATATGTGTAATCAAACCAATGAGAATCCCCTGCGCGTCTGGCACACGGCAGAGCAACAAACTCTAGGAAGAGGAGAAGCGTAATTTAGGGGGTGTATCCCTTGTTTAAGACGCTGTTATGGCAAAGCCAATCGCCAGATGTTTGTGTTCCTCACTCAGATTTTGAGACTAAGCAGAACGCCGGGTTACTACGCGGAGGCTGATTCGCGTATCCAAGCCACTTTTAGCCAAAGTCCAGCTACGCGCGATCTCCCTCGCCCGCTTTACGCGCAGGATTACGCCCGTCTGCTCGTCTGCTTCGCGGAGCTGCGACGCTTTTTCTGTCATTCTTTAACAGGCTGAAGGAAATGGCAAAGGAGAGAGGATCGCGGCTGGGAGAGCGCAGAGGAAACCAGAGCTGAATGGCAGGATGCAAGCGACCTGAAGACGCACAAAACCCCGCATTTCTACAGCTCTCGGACCCTTTTACGCCTCCTTTTGGTTTCCTTCCTTCCGAACGAGAGGATTTACCCCTGCACGGCCGTTTGAGGattttgctttttcttcatttttccgttttgtattattttcacaCGCAGAACTCAAGGAATCGAGGATGCATTGTGGATTAGTGTTGATCCTCTTTACGGGAATCTTTCTCATCGTCAGTGCTTTCCAAAATGaCAAATGTGGGGACAATATCAGAATCACTAATGCGAATTACCTCACTTCACCCGGTTATCCGGCGTCTTACTACCCGTCTCAGAAATGCACATGGGTGATTACAGCTCCGGGACCGAACCAGAGGATTTTGATCAACTTCAACCCACACTTTGACCTGGAAGACAGAGAGTGCAAATATGACTATGTGGAAGTGAGAGATGGAGTGGATGAGAGCGGGCAGCTGGTCGGGAAGTACTGTGGGAAGATCGCTCCCTCTCCTGTGGTCTCCTCTGGGAACCAGCTCTTCATCAAGTTTGTGTCTGACTACGAGACTCATGGCGCTGGCTTCTCCATCCGCTACGAGATCTTCAAAACGGGTCAGGAATGCTCCAGGAACTTCACCTCCAGCAGCGGAGTCATCAAGTCGCCGGGTTTCCCAGAGAAGTACCCCAACAACCTGGATTGCACGTTCATGATCTTCGCTCCCAAGATGTCGGAGATCGTTCTGGAGTTCGAGAGCTTTGAGCTGGAGCCAGACAAGCAGCCACCCACTGGAGTGTTCTGCCGCTACGACCGCCTGGAGATCTGGGACGGCTTCCCTGGAGTTGGTCCTTACATTGGCAGATACTGTGGACAAAATACTCCAGGACGGATCATATCCTACACTGGAATCTTGGCTTTGACAATCAACACAGACAGTGCTATTGCAAAAGAGGGATTCTCAGCTAACTTCACTGTGCTGGAAAGGACAGTCCTGGACGACTTTGACTGCACCGAGCCTTTGGGTATGGAAACTGGGGAAATCCATTCCGACCAAATCATGGCCTCATCCCAGTACAACCCCAGCTGGTCACCGGAACGATCTAGACTCAACAACCCCGAGAATGGTTGGACCCCTGCAGAGGACTCGAACAAAGAATGGATTCAGGTTGATCTTGGATTCCTGCGCTTTGTCTCGTCGATCGGCACACAGGGAGCCATCTCTCAAGAGACCAGCAAGAAATACTATGTGAAGTCCTACAAGGTGGATGTCAGCTCAAACGGAGAAGACTGGATAACTATTAAGGATGGCCCAAAACAGAAGATTTTCCAAGGGAACACCAACCCCACCGATGTAGCGAAAGCCATGTTTCCTAAGCCCACGTTGACGCGATACCTCCGTATCCGACCCTTCTCCTGGGAAACTGGCATCGCCCTGCGCTTTGAGGTGTACGGATGCAAAATCTCAGAGTACCCATGTTCTGGAATGTTGGGAATGGTCTCAGGCCTTATCGCGGACTCTCAGATCACAGTTTCATCTCACACCGATCGCACATGGGTGTCAGAGAATGCTCGTCTGCTGACCAGCCGTTCGGGATGGACGTTGCTGCCACAGCCCCAGCCGTATGCGGATGAGTGGCTGCAGATAGATCTGGCTGAGGAGAAACTGGTCCGGGGGTTGATCATCCAAGGAGGCAAACACCGTGACAACAAGGTATTCATGAAGAAGTTTCGGCTGGGCTACAGCAACAACGGATCTGACTGGAAAATGGTGATGGATGCTAGTGGCAACAAGCCCAAGATATTTGAGGGGAATTTGAACTATGACACGCCAGCGTTGAGGACAGTGGAGCCTATATTGACACGCTTTGTTAGGGTGTATCCAGACAGAGCCACTCCTGCTGGGATGGGACTTAGATTGGAACTCCTGGGCTGTGAAATGGAAGTTCCTACAGCGCCCCCTACTACACCCGCTTCCTCCACCACGCCATCAGACGAGTGTGATGATGACCAGGCTAACTGCCATAGTGGAACAGGTGATGACTACGACCAGACAGGTGGAACGGCTGCACCAGAGACGACCACAGAGACAAGCACCGTTCCAGCGTTCCTGTGGTTTGCCTGTGACTTCGGCTGGGCTAGTGGTCCTTCATTCTGTGGCTGGATGTCAGAGGACAGCGGTTTCAGGTGGCAGATCCAGTCCAGCGGCACCCCGACTCTAAACACCGGCCCAAACTTGGACCACACCGGCGGATCAGGGAACTTCATCTACACGCTGGCGACAGGTGCTCAGGAGACGGAAGTGGCTCGGCTGGTGAGTCCGTCCGTGTCGGGCCAGGACTCGGACCTGTGCTTGTCCTTCTGGTATCACATGTTTGGCTCTCACATCGGCACGCTACACATCAAACAGCGCAGAGAAAGCAGCCAGGGCTTAGCTGATGTCCTGCTCTGGACGGTCAGCGGTCATCAAGGCAACCGCTGGAGGGAGGGCCGCGTGCTCATACCCCACTCCAGTAAACCCTACCAGGTGGTCATCGAAAGTGTGGTGGAGAGGAAGAGTTGGGGAGACATTGCTGTGGATGACATCAAGATCTTGGACAATCTGAACATGGCCGACTGCAAGGACCCAGATGTCCCAGCAGAGCCAATTCTACCTGAAGACAACTTCAATGAAATCAtcgTGGACATCACGGACTTCCCGGACATTGTGGAGAACCACGAGATCAGCGGCGCCGGAAACATGCTGAAGACCCTGGACCCCATCCTCATCACCATCATCGCCATGAGCGCTCTGGGGGTCTTCCTCGGGGCCATCTGCGGAGTGGTCCTGTACTGCGCCTGCTCTCACAGCGGCATGTCCGACAGGAACTTATCAGCCCTGGAAAACTATAACTTTGAGCTGGTGGACGGCGTCAAGTTAAAGAAGGACAAGCTCAACTCACAGAACACGTACTCGGAAGCGTGAGGCGCCGGCCAATGAGAGGGAACCTCTCCTCAGGGAGGGCGGGGCTAAAACGGACTGCCAAAGCCATCCGGTTGGACGAGGACAAGGCTCTGTGGTTCAGAGAACCAatgggaggaggaggaggaggaggactgGGACTGAGCCATGCTTTTCTCAGGAGCTGCAGTGAACGGAACCTACCAGTAGGGGACACTGTGTACAAAACATTGAAtacaaggagaaaaaaaacacaaaatgaaaaataagaatatgtacagatgattgaaatgattattttaattttttattttgtattatgtttgggttgatcatttttacaaatcGGATGCTGGTGTTGAGaccaatatataataatgttataaagtatttatctttttttgtttgtttgtttttggtaggaggaaaacaaaaacatttatttttatttttaaagattgtttTACGCTTTAAGgagatgtgtaaaaaaaaaaaactacaaaaaaaccccaaatgaACCATATATGTCCAAGGGAAGGTAAATACCCCTCGGTAGGGTGAGGATCAAAGGGTGTGGAAAATCATCCCGCCCCGTTGCATTCTGGGTATGGTTCAGTCAGTGCCTTTGGTACATCTTTTTTGGCCTCCTCtgttgtggttttatttttttggtgttttcaACCCTTTAGTTGTCGGTCGAATCTGCAAAACCAATCCCGGTAAATCCATAGCGCTTTAATGTTGAAATCCTGCATATTGTAcataagttttaatatattttaatgcccTTTTCAAAGAAACGagtaaaaggagaaaaaaaaaagaaagctgcaGTATCCCTTTTTTCTTGGGTTGTATGTTGTAAATACAATCGTCTGACTgttttgtgaaagtgaaacGTGTGCTTTTTCCCGTCCTGTTGGGTTGTTTTTCGCTACGCTCCCAAAAGATGCGGCCCTTGTTCGAAACGGACGACCCCGGCGCGCGCTTCATCACCTGGGCGGGTTTCGTTCACCTGGATCACAGATCTCTAATCGCCGTATCCTCTGTAATCGCATTCAGGATGTCTGTCTATCCAGcataccaaaaaaaacaagaaaagaaagggATCATCATTGCCTTGATTCGAGCGCTCGAACGCATGTGGTCTTGAATAAAGCTCTCATTTTTAAGAGTGGTGCTATTAAATGTGGTCACGCATCGCTTCTGTCATTGGCCTTGTGTCTGTACCAAAGGACTGTTGCCTCAAACCGCAGGGTCCAAGCCGGAGACCgcctcatctcatctcatctcatctcgtCGGATTATTCTGGACTGCTGGAAGGGTCTGGTTTTAGCAACGCCGTACACACGTAGTTTAACTGATAACAGGGCTTCACTGCTGACAATACTAATGTTTTCTACAGGTTTCTCGGTATGTTCATGTACTGTGCTGTATACTGTGGCCAACACTTTGGTTTTTCCCGTTTCTTTCCGGTAGTTTCCGACGACGCGAGTCCTCGTGCCGATGCTACACGTGTGTCAGCCGAAGCCGTTTAAAGGATTCTGTGAGAAAGCATACTGTAGCATCAACGAAAAAGAAACAATGTTGCACTGATCGATATATTTGATGAAGTTTATGTGTTTATAGCATTCGTTTGTAAAAAagacaactgaaataaaaaagacagtgttcgtttttttttttaatatagtttcaGAATGTGTAATGCGATTCTGAAATGGTCAACTATCGAGATGTTTTCATTATTGAAAAAGGTATACAGATTTCCTATAGTAAAGCTCCCTTTTACCTGACCCCGATGATCTCTTTTGGTTTTTGTACTGTCGTTGAAATTTTGTGccgatttccttttttttttcctttcttttctttttttacgaGAAGATGCGGAAGcaaagaaaacttttattttcaatactGCCTCTGTACGTTGCTGTTgtaggaaggaaaaaaaacaaaaatgaataaaaacagcaagGCCTTAAAACGGA

Function

GO:

id name namespace
GO:0035767 endothelial cell chemotaxis biological_process
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0007508 larval heart development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0045765 regulation of angiogenesis biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0048538 thymus development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0051216 cartilage development biological_process
GO:0001570 vasculogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0007413 axonal fasciculation biological_process
GO:0007155 cell adhesion biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0019838 growth factor binding molecular_function
GO:0008201 heparin binding molecular_function
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU239002 lncRNA downstream 67472 7103152 ~ 7104046 (-) True G161358
TU238999 lncRNA downstream 67560 7103152 ~ 7103958 (-) False G161358
TU238997 lncRNA downstream 67560 7103303 ~ 7103958 (-) False G161358
TU239000 lncRNA downstream 67719 7103152 ~ 7103799 (-) False G161358
TU238994 lncRNA downstream 69435 7101252 ~ 7102083 (-) True G161356
TU239165 lncRNA upstream 320834 7553095 ~ 7553602 (-) True G161481
TU239171 lncRNA upstream 604228 7836489 ~ 7837112 (-) True G161487
TU239178 lncRNA upstream 626074 7858335 ~ 7859305 (-) True G161491
TU239260 lncRNA upstream 724140 7956401 ~ 7956637 (-) True G161546
TU239252 lncRNA upstream 733663 7965924 ~ 7968043 (-) True G161538
XM_043226624.1 mRNA downstream 3327 7141975 ~ 7168191 (-) False itgb1a
XM_043226625.1 mRNA downstream 3327 7141975 ~ 7168191 (-) True itgb1a
XM_043226626.1 mRNA downstream 3328 7141975 ~ 7168190 (-) False itgb1a
XM_043226687.1 mRNA downstream 74685 7090514 ~ 7096833 (-) False ralaa
XM_043226685.1 mRNA downstream 74685 7090514 ~ 7096833 (-) True ralaa
XM_043225637.1 mRNA upstream 160924 7393185 ~ 7838521 (-) True pard3aa
XM_043225636.1 mRNA upstream 607669 7839930 ~ 7855734 (-) True cul2
XM_043226941.1 mRNA upstream 636563 7868824 ~ 7914978 (-) False rreb1a
XM_043226935.1 mRNA upstream 636563 7868824 ~ 7914978 (-) False rreb1a
XM_043226940.1 mRNA upstream 636563 7868824 ~ 7914978 (-) False rreb1a
TU238971 other downstream 74679 7090532 ~ 7096839 (-) False ralaa
TU238949 other downstream 166110 6945186 ~ 7005408 (-) False G161327
TU238957 other downstream 203919 6945186 ~ 6967599 (-) True G161327
TU238790 other downstream 701417 6396171 ~ 6470101 (-) True G161224
TU238691 other downstream 1050631 6100744 ~ 6120887 (-) True LOC122330195
TU239150 other upstream 157834 7390095 ~ 7406683 (-) False pard3aa
TU239703 other upstream 2699034 9931295 ~ 9932802 (-) True G161893
TU239863 other upstream 3048536 10280797 ~ 10286608 (-) True G161992
TU239881 other upstream 3163823 10396084 ~ 10413468 (-) False myo3a
XR_006247939.1 other upstream 3219298 10451559 ~ 10458476 (-) False zgc:174877

Expression Profile