AMCG00021701


Basic Information

Item Value
gene id AMCG00021701
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 26083778 ~ 26089986 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021701
TACACGAAACATTCCGAGGACTTCCGATAGCAAGGGAACCATATTGGATTTTGAAATGTGGTTATATGAACCAAACCAAGAGTGTGCCATGACTTCTGTCGCgtctgaaattatatttacacattagTGTTTAACATAATATAGTTcttagttaaaaatatatttccgcGCTGTTGCAATGTCCAAAAGAAAGCGACCCAGAGACGACGACGACAGGGAAGAGCGCAGAAGACACAAGGACGAGAGCAAGCACCATGACAAGTACACGACGAAGAAAACCAAAGAACTTACCCAAGAAgtgaaaaaactgaaacacgTAGAGACCTTttacGAGAAACCTCCTCCTGGTCTGATTAAGGCACATGAAGACCCAATGTATGACCTGATTAGAGAAAACAGACGCCATGAAAAGGAGATGagGATACAGCAGCTACAGCAACTGCTAGAAGACACGACCTCTGACTcggagagcagcagcagcagcagcagcaactcaTCATCATCACACTCTGACAAggacaggaagaggaggaggaagaagaaggacaagaagaagaaagagaagaaaaagaggaaaaagaagagaaagcacAAGTCTTCCAAATCAAGTGAGAGCTCTGGATCAAACTGAGAGCTTTGCCGAGAAACGCAAGGGCCAGGTCCCCAGCTTTGAGCTTCGGAGTTTCTTATGCATTCTCTCGGAAGAACTGGAGCCGACAGCCTCTGACTGGATTGTGTGCTGCGCTGGTTTGCTCCAGCACAGATATCTGCCCGTACTGAGCCTGTCAGCCCTTTGTTCTTTATTCACCAGTGTCAGAACCAGTAAATTATGCATGGATTTCCAGCTTTCCGTTTGTCAAGGGTGACAGAGTGATTAACCGTTTCTTACAGAATCATATACCACGGTTGTAATTCTGTGATGGTGTGTTATAAAAATCTGCCTTGTGTTGTTTCAGCACCATTCCTAAAGCATCACATGTGAGAGAGAAGTGGGTCATATCAATGGAATTGTGGCTAGCTTGCCTAATTAGAGAGGTGTGGTATAGGGAATGCATGcatttctgttaaatgagcaCTTTAGCACTACTATGTTCAAACAGTATGTAAatagtgtaaaataaattgtattaatgaaaTGCAAGTATGTGTTCCTCTTGTTTTTATGAATTATCTATTCAAAGACAACATTAGGCttagaggattttttttaaacatattggcTAATTAAATCTATTCACAGCTTTAAGTAAGTGTAACCAGTTGTTATGACCACACAGCTTTATGCCTGTAAGGTTGTGTTGAAAAGGTTTTGTGAATTTGTGAGTTCTATTCAGTGGTTTCTGTAAAACGTTTAACTTGTATTTACAAAGTTTCTTGTTAAGATCTTGGTCACAGATCattcagttctgtttttgtgatACACTGAttactgcaatacattttaattgaagaatGGGAGCAGAATCATGCAAACAGAGTACGTCTTGAATCAAGATGATTATGaactaaaacattaataaaacatttgaacaatagCCTGTTCtcagactgaaaaataaatacattgcag

Function

GO:

id name namespace
GO:0031231 intrinsic component of peroxisomal membrane cellular_component
GO:0005777 peroxisome cellular_component
GO:0005778 peroxisomal membrane cellular_component
GO:0005779 integral component of peroxisomal membrane cellular_component
GO:0044438 obsolete microbody part cellular_component
GO:0044439 obsolete peroxisomal part cellular_component
GO:0031903 microbody membrane cellular_component
GO:0042579 microbody cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021701 True 1570 mRNA 0.40 4 26083778 26089986

Neighbor

gene id symbol gene type direction distance location
AMCG00021698 elmo1,LOC106570440,LOC106515744,LOC107702083 coding downstream 26921 26025398 ~ 26056857 (-)
AMCG00021699 elmo1,LOC107710279,LOC107556397 coding downstream 107442 25962914 ~ 25976336 (-)
AMCG00021695 NA coding downstream 199546 25873891 ~ 25884232 (-)
AMCG00021696 NA coding downstream 284114 25719357 ~ 25799664 (-)
AMCG00021690 NA coding downstream 370012 25705576 ~ 25713766 (-)
AMCG00021710 NA coding upstream 350669 26440655 ~ 26472215 (-)
AMCG00021709 NA coding upstream 474220 26564206 ~ 26566938 (-)
AMCG00021716 NA coding upstream 553768 26643754 ~ 26656084 (-)
AMCG00021724 csk21,LOC105902032,LOC105022821,LOC107589440,LOC107693292,LOC107559708,LOC105910791,LOC107670008 coding upstream 715054 26805040 ~ 26824298 (-)
AMCG00021725 NA coding upstream 856186 26946172 ~ 26946690 (-)
G87803 NA non-coding downstream 185737 25896958 ~ 25898041 (-)
G87800 NA non-coding downstream 197801 25885334 ~ 25885977 (-)
G87767 NA non-coding downstream 274574 25803340 ~ 25809204 (-)
G87756 NA non-coding downstream 313882 25769396 ~ 25769896 (-)
G87720 NA non-coding downstream 402758 25678187 ~ 25681020 (-)
G87882 NA non-coding upstream 304965 26394951 ~ 26395179 (-)
G87883 gabbr2 non-coding upstream 328694 26418680 ~ 26418899 (-)
G87884 NA non-coding upstream 342158 26432144 ~ 26437893 (-)
G87980 NA non-coding upstream 708105 26798091 ~ 26800715 (-)
G87992 NA non-coding upstream 802490 26892476 ~ 26895336 (-)
G87806 NA other downstream 175773 25905444 ~ 25908005 (-)
G87674 NA other downstream 677240 25403650 ~ 25406538 (-)
AMCG00021668 NA other downstream 1720319 24342900 ~ 24363459 (-)
AMCG00021662 NA other downstream 1873573 24199536 ~ 24210205 (-)
AMCG00021634 NA other downstream 2585017 23495025 ~ 23498761 (-)
AMCG00021700 NA other upstream 1241 26091227 ~ 26105391 (-)
G87871 NA other upstream 62119 26152105 ~ 26154375 (-)
AMCG00021719 ndrg1a other upstream 584092 26674078 ~ 26718508 (-)
AMCG00021723 hsf1 other upstream 809977 26899963 ~ 26919844 (-)
G88242 LOC106595015,LOC106598893,LOC106597821 other upstream 2691816 28781802 ~ 28783281 (-)

Expression


Co-expression Network