CI01000000_03044838_03057977


Basic Information

Item Value
gene id CI01000000_03044838_03057977
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000000
NCBI id null
chromosome length 19091038
location 3044512 ~ 3058570 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000000_03044838_03057977.mRNA
TTTTAAATATGATGCCCAGAAATCAATTTGAACTTTCAAACACAACTACTGTATGATGCTCACCAGTCGATTCAAACATGTCAATGTTGCCCAAAATCTTATTTTGATGTTCAAATTTGCACAAAAATTAAAATAAAATTGTGAGTTCAATGCAACTACGATGCACAAAAAGATCTGAAATGCCAAGAAATCATTCTATTCAAACATTTTGATGATAAAAAAGGTATATCTATTTGAACATGATAATTTTTCTATAATGCCCAAAAATGCCATAGGTTTTGAAACCTAGGCCTTGGTTCTAATAAAGCCAAACAAGAAAAAGAAAGATGTGGAAAAGGAAAGGATTAATAGTTTGGATGGAGAGATTATGGGAGAAATTAGGGGGAAGGTGGATGTTGAGGGAATGTGGACATCTTCAAGGGCTGCCGGTGATGCAGGTGAAGATTGACATCTCCAGACAGCAGGTGGAGAAGATCTTTGGTCTGGAGGATTACTGGTGTCAGTGTGTGGCCTGGAGCACTACAGGAACCCAGAAGAGCCAAAAGGCATATGTGCGCATCGCCTATCTGAGGAAGAACTTTGAGGAGGAACCGCTGGGTAAGGAAGTGGCACTTGATCAGGAAATCCTTCTTCGCTGTCATCCTCCTGAAGGTGTGCCTCCTGCAGAGGTGGAGTGGCAGAGAAACGAGGAGCTGATCGACCCCAAGACTGACCCCAATTTCTTCATCACCGTGGACCATAATCTCATCATCAAACAAGCCCGCCTGGCCGACACAGGGAACTACACCTGCGTGGCCAAGAACATTGTGGCTCGACGCAAGAGCTCCTCGGCTACTGTGATTGTCTATGCACAGAGCTATGTTTGTGGCTGTTTATCATCCTCGTGCTTGTCGGGTAATCCTGACTCGCTGTGTTCGTTTCCCCCTCTCCTTTGCACTGGGCGCACGAGCAGTGAACGGTGGCTGGTCCACGTGGGCCACATGGTCGGCCTGCAGTGCTGTCTGTGGTCGGGGGTGGCAGAAGAGGAGCCGGAGTTGCACCAACCCCACTCCCCTGAACGGCGGGACGTCCTGCGAGGGCCAGAGCGTCCAGAAAAGTGCCTGCACTGCCACCTGTCCAGATATTTTCATGCTCTGTGCTGCTTTCGCTTTTGCTGCATGAGGTTATTTTTTGTTCAGGTGTAAGCAGGGTCCAAAATTAACTTGCCTGCCAGTGGTCAAAATATATTTTTGTCCCTAGCTGTTTTTTCCCCTTGTGTTTGCATTGTGGTGTATATTTGGTAGCTCAATGTAAGGATTAATCAAGAATTCCTTTTAAATTCCAATTCAATTCCTAAATTTGAATTAAGGCAGAAAACAGGATGCAGAATTGCAATTTGAATTTAAATGTGCACTGCTGTTTAAAAGATTGTTTAATGTTTTAGAAAGAAGCTTCTGCTCATTTATTTGATCTAAAATACAGTAAAAACTTTAATATTATGAAATATTATTACAATTTAAAATAATATATATTTGAAAATATATTTTATTCCAAGCTGACTTTTCCACAGCCATTACTCTAGTCCTTCTGAAATCATTCTCTGTTGATTGAAATTCTTTGAATAGAGAGTTCAAAATCATTTTTTTGAGGTTTGAGATTTTTTGTAACAATGTAAATGTATTTACTGCCACTTTTGATCAATTTATTGCACCCTTGCTAAATAAAAGTATTAATTGCTTAAAAAAAAAAAATCATACTGACCCTAAACTTTTGGACAGTAGTACTTTAATTAGTAAAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000000_03044838_03057977.mRNA True 1777 mRNA 0.41 6 3044512 3058570

Neighbor

gene id symbol gene type direction distance location
CI01000000_03011002_03017021 NA coding upstream 27481 3010654 ~ 3017031 (+)
CI01000000_02660983_02661759 NA coding upstream 382641 2660983 ~ 2661871 (+)
CI01000000_02652927_02658258 NA coding upstream 386218 2652927 ~ 2658294 (+)
CI01000000_02639274_02651177 DDX41 coding upstream 392950 2639274 ~ 2651578 (+)
CI01000000_02622249_02636433 FAM193B coding upstream 408030 2621937 ~ 2636482 (+)
CI01000000_03073311_03109669 UNC5A coding downstream 13720 3072290 ~ 3109818 (+)
CI01000000_03163645_03170599 CLTB coding downstream 104587 3163157 ~ 3171011 (+)
CI01000000_03178021_03180730 NA coding downstream 119451 3178021 ~ 3180812 (+)
CI01000000_03184726_03189468 FAF2 coding downstream 126110 3184680 ~ 3189468 (+)
CI01000000_03220166_03232503 NA coding downstream 161596 3220166 ~ 3232503 (+)
G1523 NA non-coding upstream 105484 2923688 ~ 2939028 (+)
G1661 NA non-coding upstream 165642 2878591 ~ 2878870 (+)
G1645 NA non-coding upstream 215899 2828371 ~ 2828613 (+)
G1617 NA non-coding upstream 281954 2762341 ~ 2762558 (+)
G1604 NA non-coding upstream 344616 2699674 ~ 2699896 (+)
G1515 NA non-coding downstream 65928 3124498 ~ 3149400 (+)
G1682 NA non-coding downstream 152260 3210830 ~ 3211436 (+)
G1683 NA non-coding downstream 153253 3211823 ~ 3212955 (+)
G1689 NA non-coding downstream 183068 3241638 ~ 3241848 (+)
G1690 NA non-coding downstream 184033 3242603 ~ 3242897 (+)
G579 NA other upstream 1135704 1767917 ~ 1908808 (+)
G435 NA other upstream 1611658 1425121 ~ 1432854 (+)
G350 NA other upstream 2367575 671842 ~ 676937 (+)
G252 NA other upstream 2537440 503209 ~ 507072 (+)
G2774 NA other downstream 1395208 4453778 ~ 4454232 (+)
G2850 NA other downstream 1667416 4725986 ~ 4726482 (+)
G6811 NA other downstream 7146261 10204831 ~ 10321679 (+)
G6820 NA other downstream 7368653 10427223 ~ 10433018 (+)
G7018 NA other downstream 7919919 10978489 ~ 10980872 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00011455 unc5a,LOC107677380,LOC107653334 misc CM030133.1 CM030133.1 25607986 ~ 25662179 (+)